Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0025125

Physical Location & Seq

Genomic Coordinates Forward (+)

59523259 .. 59523647

Gene Structure 389 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21043

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGTTTGAAATGTACGCGTACACTATGGGTGATCGAGCTTATGCATTGGAAATGGCCAAGTTGCTTGATCCCAAAAAAGAGTACTTTGGTGATAGGGTGATATCACGTGATGATGGTACCCAAAAACATCAAAAGGGTCTAGATATTGTGGTTGGGCAAGAAAGTGCTGTTCTGATACTGGATGATACAGAAAATGTAAATTTTTACTTGTTAGTACTGGAAATTTTAAAGTGCATTCATATCCATTTTAATATTGTCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

87

Amino Acids

10.07

Weight (kDa)

4.97

Isoelectric Point (pI)

36.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	1 - 65	5.7e-09	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025125)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0234731 RchiOBHm_Chr7g0234811
rosa_samantha	Rh7CG461600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	116
AccB1I	GGYRCC	1 cut(s)	116
AccII	CGCG	1 cut(s)	17
AclWI	GGATC	1 cut(s)	62
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	2 cut(s)	199, 222
AcvI	CACGTG	1 cut(s)	107
AfaI	GTAC	5 cut(s)	14, 20, 83, 118, 216
AflIII	ACRYGT	1 cut(s)	15
AgsI	TTSAA	1 cut(s)	8
AluBI	AGCT	1 cut(s)	38
AluI	AGCT	1 cut(s)	38
AlwI	GGATC	1 cut(s)	62
AoxI	GGCC	1 cut(s)	54
ApoI	RAATTY	2 cut(s)	199, 222
Asp718I	GGTACC	1 cut(s)	116
AsuHPI	GGTGA	3 cut(s)	41, 101, 109
BalI	TGGCCA	1 cut(s)	56
BanI	GGYRCC	1 cut(s)	116
BbrPI	CACGTG	1 cut(s)	107
BccI	CCATC	1 cut(s)	107
BfaI	CTAG	1 cut(s)	140
BmcAI	AGTACT	2 cut(s)	83, 216
BmiI	GGNNCC	1 cut(s)	118
BsaAI	YACGTR	1 cut(s)	107
Bse1I	ACTGG	2 cut(s)	183, 222
BseGI	GGATG	1 cut(s)	187
BseNI	ACTGG	2 cut(s)	183, 222
Bsh1236I	CGCG	1 cut(s)	17
BshFI	GGCC	1 cut(s)	56
BshNI	GGYRCC	1 cut(s)	116
BsmI	GAATGC	1 cut(s)	234
BsnI	GGCC	1 cut(s)	56
Bsp143I	GATC	2 cut(s)	31, 67
BspANI	GGCC	1 cut(s)	56
BspFNI	CGCG	1 cut(s)	17
BspLI	GGNNCC	1 cut(s)	118
BspPI	GGATC	1 cut(s)	62
BspT107I	GGYRCC	1 cut(s)	116
BsrI	ACTGG	2 cut(s)	183, 222
BssMI	GATC	2 cut(s)	31, 67
BstBAI	YACGTR	1 cut(s)	107
BstF5I	GGATG	1 cut(s)	187
BstFNI	CGCG	1 cut(s)	17
BstKTI	GATC	2 cut(s)	34, 70
BstMBI	GATC	2 cut(s)	31, 67
BstUI	CGCG	1 cut(s)	17
BsuRI	GGCC	1 cut(s)	56
BtsCI	GGATG	1 cut(s)	187
Csp6I	GTAC	5 cut(s)	13, 19, 82, 117, 215
CviJI	RGCY	2 cut(s)	38, 56
CviKI_1	RGCY	2 cut(s)	38, 56
CviQI	GTAC	5 cut(s)	13, 19, 82, 117, 215
DpnI	GATC	2 cut(s)	33, 69
DpnII	GATC	2 cut(s)	31, 67
DraI	TTTAAA	1 cut(s)	228
EaeI	YGGCCR	1 cut(s)	54
Eco32I	GATATC	1 cut(s)	102
Eco72I	CACGTG	1 cut(s)	107
EcoRV	GATATC	1 cut(s)	102
EcoT22I	ATGCAT	1 cut(s)	46
FaiI	YATR	5 cut(s)	26, 42, 240, 260, 262
FauNDI	CATATG	1 cut(s)	260
FokI	GGATG	1 cut(s)	194
FspBI	CTAG	1 cut(s)	140
HaeIII	GGCC	1 cut(s)	56
HphI	GGTGA	3 cut(s)	41, 101, 109
Hpy166II	GTNNAC	1 cut(s)	21
Hpy188I	TCNGA	1 cut(s)	174
Hpy188III	TCNNGA	1 cut(s)	140
Hpy8I	GTNNAC	1 cut(s)	21
HpyCH4IV	ACGT	1 cut(s)	106
HpyCH4V	TGCA	2 cut(s)	44, 234
HpySE526I	ACGT	1 cut(s)	106
KpnI	GGTACC	1 cut(s)	120
Kzo9I	GATC	2 cut(s)	31, 67
LpnPI	CCDG	2 cut(s)	164, 203
MaeI	CTAG	1 cut(s)	140
MaeII	ACGT	1 cut(s)	106
MalI	GATC	2 cut(s)	33, 69
MboI	GATC	2 cut(s)	31, 67
MlsI	TGGCCA	1 cut(s)	56
MluCI	AATT	2 cut(s)	199, 222
MluI	ACGCGT	1 cut(s)	15
MluNI	TGGCCA	1 cut(s)	56
Mox20I	TGGCCA	1 cut(s)	56
Mph1103I	ATGCAT	1 cut(s)	46
MscI	TGGCCA	1 cut(s)	56
MseI	TTAA	2 cut(s)	227, 249
Msp20I	TGGCCA	1 cut(s)	56
Mva1269I	GAATGC	1 cut(s)	234
MvnI	CGCG	1 cut(s)	17
NdeI	CATATG	1 cut(s)	260
NdeII	GATC	2 cut(s)	31, 67
NlaIV	GGNNCC	1 cut(s)	118
NsiI	ATGCAT	1 cut(s)	46
PctI	GAATGC	1 cut(s)	234
PmaCI	CACGTG	1 cut(s)	107
PmlI	CACGTG	1 cut(s)	107
Ppu21I	YACGTR	1 cut(s)	107
PspCI	CACGTG	1 cut(s)	107
PspN4I	GGNNCC	1 cut(s)	118
RsaI	GTAC	5 cut(s)	14, 20, 83, 118, 216
RsaNI	GTAC	5 cut(s)	13, 19, 82, 117, 215
SaqAI	TTAA	2 cut(s)	227, 249
Sau3AI	GATC	2 cut(s)	31, 67
ScaI	AGTACT	2 cut(s)	83, 216
SetI	ASST	2 cut(s)	40, 109
Sse9I	AATT	2 cut(s)	199, 222
SspI	AATATT	1 cut(s)	253
SspMI	CTAG	1 cut(s)	140
TaiI	ACGT	1 cut(s)	109
TaqI	TCGA	1 cut(s)	34
TasI	AATT	2 cut(s)	199, 222
TatI	WGTACW	2 cut(s)	81, 214
Tru1I	TTAA	2 cut(s)	227, 249
Tru9I	TTAA	2 cut(s)	227, 249
TspDTI	ATGAA	1 cut(s)	227
XapI	RAATTY	2 cut(s)	199, 222
XbaI	TCTAGA	1 cut(s)	139
XspI	CTAG	1 cut(s)	140
ZrmI	AGTACT	2 cut(s)	83, 216
Zsp2I	ATGCAT	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.