Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0025125

Physical Location & Seq

Genomic Coordinates Forward (+)

61570448 .. 61578572

Gene Structure 8125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG461600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGTTTGAAATGTACGCGTACACTATGGGTGATCGAGCTTATGCATTGGAAATGGCCAAGTTGCTTGATCCCAAAAAAGAGTACTTTGGTGATAGGGTGATATCACGTGATGATGGTACCCAAAAACATCAAAAGGGTCTAGATATTGTGGTTGGGCAAGAAAGTGCTGTTCTGATACTGGATGATACAGAAAATCCCTTCAATCACTCCAATGAAGCCATCGTCATCATCCTCATCGCCGCCTCCGCCGCCGCCACTGCCGCCACTGCCTCCGCTGCCGCCGCTGCCGCCGCTGCCTCCGCTGCCGCCACTGCCGCCACTGCCGCCGCCGCCGCCATCCCCATGGCTGTCCTACGATCTGTTCTTGAGCTTCAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

126

Amino Acids

13.11

Weight (kDa)

4.85

Isoelectric Point (pI)

27.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	1 - 76	1e-09	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0025125)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0234731 RchiOBHm_Chr7g0234811
rosa_samantha	Rh7CG461600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	116
AccB1I	GGYRCC	1 cut(s)	116
AccII	CGCG	1 cut(s)	17
AclWI	GGATC	1 cut(s)	62
AcoI	YGGCCR	1 cut(s)	54
AcuI	CTGAAG	1 cut(s)	356
AcvI	CACGTG	1 cut(s)	107
AfaI	GTAC	4 cut(s)	14, 20, 83, 118
AflIII	ACRYGT	1 cut(s)	15
AgsI	TTSAA	2 cut(s)	8, 202
AluBI	AGCT	2 cut(s)	38, 370
AluI	AGCT	2 cut(s)	38, 370
AlwI	GGATC	1 cut(s)	62
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	4 cut(s)	275, 284, 293, 302
Asp718I	GGTACC	1 cut(s)	116
AsuHPI	GGTGA	3 cut(s)	41, 101, 109
BalI	TGGCCA	1 cut(s)	56
BanI	GGYRCC	1 cut(s)	116
BbrPI	CACGTG	1 cut(s)	107
BbvI	GCAGC	4 cut(s)	262, 271, 280, 289
BccI	CCATC	3 cut(s)	107, 227, 344
BfaI	CTAG	1 cut(s)	140
BmcAI	AGTACT	1 cut(s)	83
BmiI	GGNNCC	1 cut(s)	118
BsaAI	YACGTR	1 cut(s)	107
BsaJI	CCNNGG	1 cut(s)	342
Bse1I	ACTGG	1 cut(s)	183
BseDI	CCNNGG	1 cut(s)	342
BseGI	GGATG	3 cut(s)	187, 228, 336
BseNI	ACTGG	1 cut(s)	183
BseXI	GCAGC	4 cut(s)	262, 271, 280, 289
Bsh1236I	CGCG	1 cut(s)	17
BshFI	GGCC	1 cut(s)	56
BshNI	GGYRCC	1 cut(s)	116
BsnI	GGCC	1 cut(s)	56
Bsp143I	GATC	3 cut(s)	31, 67, 356
Bsp19I	CCATGG	1 cut(s)	342
BspANI	GGCC	1 cut(s)	56
BspFNI	CGCG	1 cut(s)	17
BspLI	GGNNCC	1 cut(s)	118
BspPI	GGATC	1 cut(s)	62
BspT107I	GGYRCC	1 cut(s)	116
BsrI	ACTGG	1 cut(s)	183
BssECI	CCNNGG	1 cut(s)	342
BssMI	GATC	3 cut(s)	31, 67, 356
BssT1I	CCWWGG	1 cut(s)	342
BstBAI	YACGTR	1 cut(s)	107
BstDSI	CCRYGG	1 cut(s)	342
BstF5I	GGATG	3 cut(s)	187, 228, 336
BstFNI	CGCG	1 cut(s)	17
BstKTI	GATC	3 cut(s)	34, 70, 359
BstMBI	GATC	3 cut(s)	31, 67, 356
BstUI	CGCG	1 cut(s)	17
BstV1I	GCAGC	4 cut(s)	262, 271, 280, 289
BstXI	CCANNNNNNTGG	1 cut(s)	343
BsuRI	GGCC	1 cut(s)	56
BtgI	CCRYGG	1 cut(s)	342
BtgZI	GCGATG	1 cut(s)	220
BtsCI	GGATG	3 cut(s)	187, 228, 336
BtsI	GCAGTG	4 cut(s)	255, 264, 309, 318
BtsIMutI	CAGTG	4 cut(s)	255, 264, 309, 318
Csp6I	GTAC	4 cut(s)	13, 19, 82, 117
CviAII	CATG	1 cut(s)	343
CviJI	RGCY	5 cut(s)	38, 56, 218, 347, 370
CviKI_1	RGCY	5 cut(s)	38, 56, 218, 347, 370
CviQI	GTAC	4 cut(s)	13, 19, 82, 117
DpnI	GATC	3 cut(s)	33, 69, 358
DpnII	GATC	3 cut(s)	31, 67, 356
EaeI	YGGCCR	1 cut(s)	54
EciI	GGCGGA	1 cut(s)	235
Eco130I	CCWWGG	1 cut(s)	342
Eco32I	GATATC	1 cut(s)	102
Eco57I	CTGAAG	1 cut(s)	356
Eco72I	CACGTG	1 cut(s)	107
EcoRV	GATATC	1 cut(s)	102
EcoT14I	CCWWGG	1 cut(s)	342
EcoT22I	ATGCAT	1 cut(s)	46
ErhI	CCWWGG	1 cut(s)	342
FaeI	CATG	1 cut(s)	346
FaiI	YATR	3 cut(s)	26, 42, 344
FatI	CATG	1 cut(s)	342
FokI	GGATG	3 cut(s)	194, 215, 323
FspBI	CTAG	1 cut(s)	140
HaeIII	GGCC	1 cut(s)	56
Hin1II	CATG	1 cut(s)	346
HphI	GGTGA	3 cut(s)	41, 101, 109
Hpy166II	GTNNAC	1 cut(s)	21
Hpy188I	TCNGA	2 cut(s)	174, 375
Hpy188III	TCNNGA	2 cut(s)	140, 365
Hpy8I	GTNNAC	1 cut(s)	21
HpyAV	CCTTC	1 cut(s)	208
HpyCH4IV	ACGT	1 cut(s)	106
HpyCH4V	TGCA	1 cut(s)	44
HpySE526I	ACGT	1 cut(s)	106
Hsp92II	CATG	1 cut(s)	346
KpnI	GGTACC	1 cut(s)	120
Kzo9I	GATC	3 cut(s)	31, 67, 356
LpnPI	CCDG	1 cut(s)	164
Lsp1109I	GCAGC	4 cut(s)	262, 271, 280, 289
MaeI	CTAG	1 cut(s)	140
MaeII	ACGT	1 cut(s)	106
MalI	GATC	3 cut(s)	33, 69, 358
MboI	GATC	3 cut(s)	31, 67, 356
MlsI	TGGCCA	1 cut(s)	56
MluI	ACGCGT	1 cut(s)	15
MluNI	TGGCCA	1 cut(s)	56
MnlI	CCTC	5 cut(s)	242, 253, 280, 307, 369
Mox20I	TGGCCA	1 cut(s)	56
Mph1103I	ATGCAT	1 cut(s)	46
MscI	TGGCCA	1 cut(s)	56
MslI	CAYNNNNRTG	2 cut(s)	210, 341
Msp20I	TGGCCA	1 cut(s)	56
MspA1I	CMGCKG	4 cut(s)	275, 284, 293, 302
MvnI	CGCG	1 cut(s)	17
NcoI	CCATGG	1 cut(s)	342
NdeII	GATC	3 cut(s)	31, 67, 356
NlaIII	CATG	1 cut(s)	346
NlaIV	GGNNCC	1 cut(s)	118
NsiI	ATGCAT	1 cut(s)	46
PmaCI	CACGTG	1 cut(s)	107
PmlI	CACGTG	1 cut(s)	107
Ppu21I	YACGTR	1 cut(s)	107
PspCI	CACGTG	1 cut(s)	107
PspN4I	GGNNCC	1 cut(s)	118
RsaI	GTAC	4 cut(s)	14, 20, 83, 118
RsaNI	GTAC	4 cut(s)	13, 19, 82, 117
RseI	CAYNNNNRTG	2 cut(s)	210, 341
Sau3AI	GATC	3 cut(s)	31, 67, 356
ScaI	AGTACT	1 cut(s)	83
SetI	ASST	4 cut(s)	40, 109, 372, 380
SmiMI	CAYNNNNRTG	2 cut(s)	210, 341
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
SspMI	CTAG	1 cut(s)	140
StyI	CCWWGG	1 cut(s)	342
TaiI	ACGT	1 cut(s)	109
TaqI	TCGA	1 cut(s)	34
TatI	WGTACW	1 cut(s)	81
TscAI	CASTG	4 cut(s)	262, 271, 316, 325
TseI	GCWGC	4 cut(s)	275, 284, 293, 302
TspDTI	ATGAA	1 cut(s)	228
TspRI	CASTG	4 cut(s)	262, 271, 316, 325
XbaI	TCTAGA	1 cut(s)	139
XspI	CTAG	1 cut(s)	140
ZrmI	AGTACT	1 cut(s)	83
Zsp2I	ATGCAT	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.