RchiOBHm_Chr7g0235891

CTLH/CRA C-terminal to LisH motif domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0030420
Physical Location & Seq
Reverse (-)
60811944 .. 60814020
2077 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21139

Sequence Viewer

Length: 690 bp
ATGATTGCAGTTGAAATGGGATTGAAGGAGCTTGCTTTCCTGAAGCCCTCTGCATCGAAGAAGTATGGTAAACCTATCACCACGTGTGTGAAGTGGTCCGAAAGGAGGAGGTTTGAAATTGCTGGATTGGTTGCCACTGTCTTAAGAGCCCATTTACATGCCTATGATCCAGTTTTCTCAATGACTTTGATATATTTAATAAGCATACACAAGGGCTTTTGTCTTCGTCAAGGAATTTCATCACCCATTTCAGACCTTAAGACGAGGTTGCTTCTAGAGGAGCGTGACCCCCCAGCAATTCCCCAAGAGAGCCTGTCTGAAGCACCTCCTTTTGATGAGATGAGACTTCTAAAACATGCACACTTGTCCCTAGATGTTACAGGAGGTAAAATAGTTCAACATTTGCGGGTGATGCATGGATCACAGAGATGTTCCTTATTTCATGTGTTAGACAATGAACAAGTGGACATACAAGCTCTAGCACACGCTGTAGAACTTACAAGGCAGGGAGCAGTAGATAGTTTGAGATTTGCTAAGGGTGATTTGTTTCAGGCTTTTCAGAACGAAATATGTAGAATGAGAGTTGATGTTACCCTGCTTGATGAGCTTGTTCGCGAGTACTGTGTTTATAGGGGCATTGTGGATGCTGGTCTTGCATCTTCTTCTGGTTTTGTGAGGGTTGGCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLTH

Protein Analysis

229

Amino Acids

25.65

Weight (kDa)

8.28

Isoelectric Point (pI)

31.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030420)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0235891
rosa_wichuraiana Rw6G008600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 615
AciI CCGC 1 cut(s) 406
AclWI GGATC 2 cut(s) 161, 427
AcsI RAATTY 1 cut(s) 234
AcuI CTGAAG 2 cut(s) 62, 339
AcvI CACGTG 1 cut(s) 84
AdeI CACNNNGTG 1 cut(s) 84
AfaI GTAC 1 cut(s) 620
AfiI CCNNNNNNNGG 1 cut(s) 105
AflII CTTAAG 2 cut(s) 142, 257
AflIII ACRYGT 1 cut(s) 83
AgsI TTSAA 4 cut(s) 14, 25, 116, 398
AleI CACNNNNGTG 1 cut(s) 86
AluBI AGCT 3 cut(s) 31, 476, 607
AluI AGCT 3 cut(s) 31, 476, 607
Alw26I GTCTC 1 cut(s) 337
AlwI GGATC 2 cut(s) 161, 427
ApoI RAATTY 1 cut(s) 234
AspS9I GGNCC 1 cut(s) 96
AsuHPI GGTGA 4 cut(s) 70, 234, 421, 551
AvaII GGWCC 1 cut(s) 96
BanII GRGCYC 1 cut(s) 151
BbrPI CACGTG 1 cut(s) 84
BbsI GAAGAC 1 cut(s) 215
BcoDI GTCTC 1 cut(s) 337
BfaI CTAG 3 cut(s) 275, 371, 479
BfmI CTRYAG 1 cut(s) 489
BfrI CTTAAG 2 cut(s) 142, 257
BmcAI AGTACT 1 cut(s) 620
Bme18I GGWCC 1 cut(s) 96
BmgT120I GGNCC 1 cut(s) 96
BmsI GCATC 4 cut(s) 62, 402, 634, 665
BpiI GAAGAC 1 cut(s) 215
Bpu10I CCTNAGC 1 cut(s) 534
BsaAI YACGTR 1 cut(s) 84
Bsc4I CCNNNNNNNGG 1 cut(s) 105
Bse1I ACTGG 1 cut(s) 170
BseGI GGATG 1 cut(s) 649
BseLI CCNNNNNNNGG 1 cut(s) 105
BseNI ACTGG 1 cut(s) 170
BseRI GAGGAG 2 cut(s) 121, 293
BseYI CCCAGC 1 cut(s) 292
Bsh1236I CGCG 1 cut(s) 615
BslFI GGGAC 1 cut(s) 352
BslI CCNNNNNNNGG 1 cut(s) 105
BsmAI GTCTC 1 cut(s) 337
BsmFI GGGAC 1 cut(s) 352
Bsp1286I GDGCHC 1 cut(s) 151
Bsp143I GATC 2 cut(s) 166, 419
Bsp68I TCGCGA 1 cut(s) 615
BspACI CCGC 1 cut(s) 406
BspFNI CGCG 1 cut(s) 615
BspPI GGATC 2 cut(s) 161, 427
BspTI CTTAAG 2 cut(s) 142, 257
BsrI ACTGG 1 cut(s) 170
BssMI GATC 2 cut(s) 166, 419
Bst4CI ACNGT 2 cut(s) 139, 623
BstAFI CTTAAG 2 cut(s) 142, 257
BstBAI YACGTR 1 cut(s) 84
BstC8I GCNNGC 1 cut(s) 33
BstDEI CTNAG 1 cut(s) 534
BstF5I GGATG 1 cut(s) 649
BstFNI CGCG 1 cut(s) 615
BstKTI GATC 2 cut(s) 169, 422
BstMAI GTCTC 1 cut(s) 337
BstMBI GATC 2 cut(s) 166, 419
BstMWI GCNNNNNNNGC 3 cut(s) 412, 604, 653
BstNSI RCATGY 2 cut(s) 161, 359
BstSFI CTRYAG 1 cut(s) 489
BstUI CGCG 1 cut(s) 615
BstV2I GAAGAC 1 cut(s) 215
BtsCI GGATG 1 cut(s) 649
BtsIMutI CAGTG 1 cut(s) 135
BtuMI TCGCGA 1 cut(s) 615
Cac8I GCNNGC 1 cut(s) 33
Cfr13I GGNCC 1 cut(s) 96
Csp6I GTAC 1 cut(s) 619
CviAII CATG 4 cut(s) 158, 356, 416, 443
CviJI RGCY 8 cut(s) 31, 46, 149, 216, 312, 476, 554, 607
CviKI_1 RGCY 8 cut(s) 31, 46, 149, 216, 312, 476, 554, 607
CviQI GTAC 1 cut(s) 619
DdeI CTNAG 1 cut(s) 534
DpnI GATC 2 cut(s) 168, 421
DpnII GATC 2 cut(s) 166, 419
DraIII CACNNNGTG 1 cut(s) 84
Eco24I GRGCYC 1 cut(s) 151
Eco47I GGWCC 1 cut(s) 96
Eco57I CTGAAG 2 cut(s) 62, 339
Eco72I CACGTG 1 cut(s) 84
EcoT22I ATGCAT 1 cut(s) 417
EcoT38I GRGCYC 1 cut(s) 151
FaeI CATG 4 cut(s) 161, 359, 419, 446
FaqI GGGAC 1 cut(s) 352
FatI CATG 4 cut(s) 157, 355, 415, 442
FauI CCCGC 1 cut(s) 399
FokI GGATG 1 cut(s) 656
FriOI GRGCYC 1 cut(s) 151
FspBI CTAG 3 cut(s) 275, 371, 479
GsaI CCCAGC 1 cut(s) 296
Hin1II CATG 4 cut(s) 161, 359, 419, 446
HphI GGTGA 4 cut(s) 70, 234, 421, 551
Hpy166II GTNNAC 2 cut(s) 71, 466
Hpy188I TCNGA 4 cut(s) 100, 253, 319, 561
Hpy188III TCNNGA 3 cut(s) 40, 275, 614
Hpy8I GTNNAC 2 cut(s) 71, 466
HpyAV CCTTC 1 cut(s) 19
HpyCH4III ACNGT 2 cut(s) 139, 623
HpyCH4IV ACGT 1 cut(s) 83
HpyCH4V TGCA 5 cut(s) 8, 53, 359, 415, 656
HpyF10VI GCNNNNNNNGC 3 cut(s) 412, 604, 653
HpyF3I CTNAG 1 cut(s) 534
HpySE526I ACGT 1 cut(s) 83
Hsp92II CATG 4 cut(s) 161, 359, 419, 446
Kzo9I GATC 2 cut(s) 166, 419
LmnI GCTCC 3 cut(s) 28, 280, 509
LweI GCATC 4 cut(s) 62, 402, 634, 665
MaeI CTAG 3 cut(s) 275, 371, 479
MaeII ACGT 1 cut(s) 83
MaeIII GTNAC 3 cut(s) 284, 376, 589
MalI GATC 2 cut(s) 168, 421
MboI GATC 2 cut(s) 166, 419
MboII GAAGA 4 cut(s) 70, 215, 651, 654
MhlI GDGCHC 1 cut(s) 151
MluCI AATT 3 cut(s) 117, 234, 297
MnlI CCTC 8 cut(s) 58, 99, 102, 258, 271, 336, 377, 669
Mph1103I ATGCAT 1 cut(s) 417
MseI TTAA 4 cut(s) 143, 197, 258, 688
MslI CAYNNNNRTG 4 cut(s) 86, 156, 162, 427
MspCI CTTAAG 2 cut(s) 142, 257
MvnI CGCG 1 cut(s) 615
MwoI GCNNNNNNNGC 3 cut(s) 412, 604, 653
NdeII GATC 2 cut(s) 166, 419
NlaIII CATG 4 cut(s) 161, 359, 419, 446
NmuCI GTSAC 1 cut(s) 284
NruI TCGCGA 1 cut(s) 615
NsiI ATGCAT 1 cut(s) 417
NspI RCATGY 2 cut(s) 161, 359
OliI CACNNNNGTG 1 cut(s) 86
PmaCI CACGTG 1 cut(s) 84
PmlI CACGTG 1 cut(s) 84
Ppu21I YACGTR 1 cut(s) 84
PspCI CACGTG 1 cut(s) 84
PspFI CCCAGC 1 cut(s) 292
PspPI GGNCC 1 cut(s) 96
RruI TCGCGA 1 cut(s) 615
RsaI GTAC 1 cut(s) 620
RsaNI GTAC 1 cut(s) 619
RseI CAYNNNNRTG 4 cut(s) 86, 156, 162, 427
SaqAI TTAA 4 cut(s) 143, 197, 258, 688
Sau3AI GATC 2 cut(s) 166, 419
Sau96I GGNCC 1 cut(s) 96
ScaI AGTACT 1 cut(s) 620
SduI GDGCHC 1 cut(s) 151
SfaNI GCATC 4 cut(s) 62, 402, 634, 665
SfcI CTRYAG 1 cut(s) 489
SinI GGWCC 1 cut(s) 96
SmiMI CAYNNNNRTG 4 cut(s) 86, 156, 162, 427
SmlI CTYRAG 2 cut(s) 142, 257
SmoI CTYRAG 2 cut(s) 142, 257
Sse9I AATT 3 cut(s) 117, 234, 297
SsiI CCGC 1 cut(s) 406
SspMI CTAG 3 cut(s) 275, 371, 479
TaaI ACNGT 2 cut(s) 139, 623
TaiI ACGT 1 cut(s) 86
TaqI TCGA 1 cut(s) 56
TasI AATT 3 cut(s) 117, 234, 297
TatI WGTACW 1 cut(s) 618
Tru1I TTAA 4 cut(s) 143, 197, 258, 688
Tru9I TTAA 4 cut(s) 143, 197, 258, 688
TscAI CASTG 1 cut(s) 142
TseFI GTSAC 1 cut(s) 284
Tsp45I GTSAC 1 cut(s) 284
TspDTI ATGAA 3 cut(s) 228, 431, 471
TspRI CASTG 1 cut(s) 142
Vha464I CTTAAG 2 cut(s) 142, 257
VpaK11BI GGWCC 1 cut(s) 96
XapI RAATTY 1 cut(s) 234
XbaI TCTAGA 1 cut(s) 274
XceI RCATGY 2 cut(s) 161, 359
XspI CTAG 3 cut(s) 275, 371, 479
ZrmI AGTACT 1 cut(s) 620
Zsp2I ATGCAT 1 cut(s) 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.