Rw6G008600

CTLH/CRA C-terminal to LisH motif domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0030420
Physical Location & Seq
Reverse (-)
14541975 .. 14544312
2338 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G008600.1

Sequence Viewer

Length: 684 bp
ATGATTGCAGTTGAAATGGGATTGAAGGAGCTTGCTTTCCTGAAGTGGTCCGAAAGGAGGAGGTTTGAAATTGCTGGATTGGTTGCCACTGTCTTAAGAGCCCATTTACATGCCTATGATCCAGTTTTCTCAATGACTTTGATATATTTAATAAGTGTCTTGTGCAGCATACACAAGGGCTTTTGTCTTCGTCAAGGAATTTCATCACCCATTTCAGACCTTAAGACGAGGTTGCTTCTAGAGGAGTGTGACCCCCCAGCAATTCCCCAAGAGAGCCTGTCTGAAGCACCTCCTTTTGATGAGATGAGACTTCTAAAACATGCACACTTGTCCCTAGATGTTACAGGAGGTAAAATAGTTCAACATTTGCGGGTGGACATACAAGCTCTAGCACACGCTGTAGAACTTACAAGGCAGGGAGCAGTAGATAGTTTGAGATTTGCTAAGGGTGATTTGTTTCAGGCTTTTCAGAACGAAATATGTAGAATGAGAGTTGATGTTACCCTGCTTGATGAGCTTGTTCGCGAGTACTGTGTTTATAGGGGCATTGTGGATGCTGGTCTTGCATCTTCTTCTGATAATGCAAATGTTACTTACTCGGCAAAAAACACCGCCTTTCATAGGTCCATTTTCCTGTGGGAATCTTTAAGTATGGAGATGTTACTACCCATGTACAGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLTH

Protein Analysis

227

Amino Acids

25.6

Weight (kDa)

6.06

Isoelectric Point (pI)

37.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030420)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0235891
rosa_wichuraiana Rw6G008600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 525
AciI CCGC 2 cut(s) 370, 612
AclWI GGATC 1 cut(s) 113
AcsI RAATTY 1 cut(s) 198
AcuI CTGAAG 2 cut(s) 62, 303
AfaI GTAC 2 cut(s) 530, 674
AfiI CCNNNNNNNGG 2 cut(s) 57, 621
AflII CTTAAG 2 cut(s) 94, 221
AgsI TTSAA 4 cut(s) 14, 25, 68, 362
AluBI AGCT 3 cut(s) 31, 386, 517
AluI AGCT 3 cut(s) 31, 386, 517
Alw26I GTCTC 1 cut(s) 301
AlwI GGATC 1 cut(s) 113
ApeKI GCWGC 1 cut(s) 165
ApoI RAATTY 1 cut(s) 198
AspS9I GGNCC 2 cut(s) 48, 624
AsuHPI GGTGA 2 cut(s) 198, 461
AvaII GGWCC 2 cut(s) 48, 624
BanII GRGCYC 1 cut(s) 103
BbsI GAAGAC 1 cut(s) 179
BbvI GCAGC 1 cut(s) 177
BcoDI GTCTC 1 cut(s) 301
BfaI CTAG 3 cut(s) 239, 335, 389
BfmI CTRYAG 1 cut(s) 399
BfrI CTTAAG 2 cut(s) 94, 221
BisI GCNGC 1 cut(s) 166
BlsI GCNGC 1 cut(s) 167
BmcAI AGTACT 1 cut(s) 530
Bme18I GGWCC 2 cut(s) 48, 624
BmgT120I GGNCC 2 cut(s) 48, 624
BmsI GCATC 2 cut(s) 544, 575
BpiI GAAGAC 1 cut(s) 179
Bpu10I CCTNAGC 1 cut(s) 444
Bsc4I CCNNNNNNNGG 2 cut(s) 57, 621
Bse1I ACTGG 1 cut(s) 122
BseGI GGATG 1 cut(s) 559
BseLI CCNNNNNNNGG 2 cut(s) 57, 621
BseNI ACTGG 1 cut(s) 122
BseRI GAGGAG 2 cut(s) 73, 257
BseXI GCAGC 1 cut(s) 177
BseYI CCCAGC 1 cut(s) 256
BsgI GTGCAG 1 cut(s) 184
Bsh1236I CGCG 1 cut(s) 525
BslFI GGGAC 1 cut(s) 316
BslI CCNNNNNNNGG 2 cut(s) 57, 621
BsmAI GTCTC 1 cut(s) 301
BsmFI GGGAC 1 cut(s) 316
Bsp1286I GDGCHC 1 cut(s) 103
Bsp1407I TGTACA 1 cut(s) 672
Bsp143I GATC 1 cut(s) 118
Bsp68I TCGCGA 1 cut(s) 525
BspACI CCGC 2 cut(s) 370, 612
BspFNI CGCG 1 cut(s) 525
BspPI GGATC 1 cut(s) 113
BspTI CTTAAG 2 cut(s) 94, 221
BsrGI TGTACA 1 cut(s) 672
BsrI ACTGG 1 cut(s) 122
BssMI GATC 1 cut(s) 118
Bst4CI ACNGT 3 cut(s) 91, 533, 677
BstAFI CTTAAG 2 cut(s) 94, 221
BstAUI TGTACA 1 cut(s) 672
BstC8I GCNNGC 1 cut(s) 33
BstDEI CTNAG 1 cut(s) 444
BstENI CCTNNNNNAGG 1 cut(s) 619
BstF5I GGATG 1 cut(s) 559
BstFNI CGCG 1 cut(s) 525
BstKTI GATC 1 cut(s) 121
BstMAI GTCTC 1 cut(s) 301
BstMBI GATC 1 cut(s) 118
BstMWI GCNNNNNNNGC 2 cut(s) 514, 563
BstNSI RCATGY 2 cut(s) 113, 323
BstSFI CTRYAG 1 cut(s) 399
BstUI CGCG 1 cut(s) 525
BstV1I GCAGC 1 cut(s) 177
BstV2I GAAGAC 1 cut(s) 179
BtsCI GGATG 1 cut(s) 559
BtsIMutI CAGTG 1 cut(s) 87
BtuMI TCGCGA 1 cut(s) 525
Cac8I GCNNGC 1 cut(s) 33
Cfr13I GGNCC 2 cut(s) 48, 624
Csp6I GTAC 2 cut(s) 529, 673
CviAII CATG 3 cut(s) 110, 320, 670
CviJI RGCY 7 cut(s) 31, 101, 180, 276, 386, 464, 517
CviKI_1 RGCY 7 cut(s) 31, 101, 180, 276, 386, 464, 517
CviQI GTAC 2 cut(s) 529, 673
DdeI CTNAG 1 cut(s) 444
DpnI GATC 1 cut(s) 120
DpnII GATC 1 cut(s) 118
Eco24I GRGCYC 1 cut(s) 103
Eco47I GGWCC 2 cut(s) 48, 624
Eco57I CTGAAG 2 cut(s) 62, 303
EcoNI CCTNNNNNAGG 1 cut(s) 619
EcoT38I GRGCYC 1 cut(s) 103
FaeI CATG 3 cut(s) 113, 323, 673
FaqI GGGAC 1 cut(s) 316
FatI CATG 3 cut(s) 109, 319, 669
FauI CCCGC 1 cut(s) 363
Fnu4HI GCNGC 1 cut(s) 166
FokI GGATG 1 cut(s) 566
FriOI GRGCYC 1 cut(s) 103
Fsp4HI GCNGC 1 cut(s) 166
FspBI CTAG 3 cut(s) 239, 335, 389
GluI GCNGC 1 cut(s) 166
GsaI CCCAGC 1 cut(s) 260
Hin1II CATG 3 cut(s) 113, 323, 673
HinfI GANTC 1 cut(s) 641
HphI GGTGA 2 cut(s) 198, 461
Hpy166II GTNNAC 1 cut(s) 376
Hpy188I TCNGA 5 cut(s) 52, 217, 283, 471, 577
Hpy188III TCNNGA 3 cut(s) 40, 239, 524
Hpy8I GTNNAC 1 cut(s) 376
HpyAV CCTTC 1 cut(s) 19
HpyCH4III ACNGT 3 cut(s) 91, 533, 677
HpyCH4V TGCA 5 cut(s) 8, 165, 323, 566, 584
HpyF10VI GCNNNNNNNGC 2 cut(s) 514, 563
HpyF3I CTNAG 1 cut(s) 444
Hsp92II CATG 3 cut(s) 113, 323, 673
Kzo9I GATC 1 cut(s) 118
LmnI GCTCC 2 cut(s) 28, 419
Lsp1109I GCAGC 1 cut(s) 177
LweI GCATC 2 cut(s) 544, 575
MaeI CTAG 3 cut(s) 239, 335, 389
MaeIII GTNAC 5 cut(s) 248, 340, 499, 589, 660
MalI GATC 1 cut(s) 120
MboI GATC 1 cut(s) 118
MboII GAAGA 3 cut(s) 179, 561, 564
MhlI GDGCHC 1 cut(s) 103
MluCI AATT 3 cut(s) 69, 198, 261
MnlI CCTC 6 cut(s) 51, 54, 222, 235, 300, 341
MseI TTAA 4 cut(s) 95, 149, 222, 647
MslI CAYNNNNRTG 2 cut(s) 108, 114
MspCI CTTAAG 2 cut(s) 94, 221
MvnI CGCG 1 cut(s) 525
MwoI GCNNNNNNNGC 2 cut(s) 514, 563
NdeII GATC 1 cut(s) 118
NlaIII CATG 3 cut(s) 113, 323, 673
NmeAIII GCCGAG 1 cut(s) 578
NmuCI GTSAC 1 cut(s) 248
NruI TCGCGA 1 cut(s) 525
NspI RCATGY 2 cut(s) 113, 323
PfeI GAWTC 1 cut(s) 641
PkrI GCNGC 1 cut(s) 167
PspFI CCCAGC 1 cut(s) 256
PspPI GGNCC 2 cut(s) 48, 624
RruI TCGCGA 1 cut(s) 525
RsaI GTAC 2 cut(s) 530, 674
RsaNI GTAC 2 cut(s) 529, 673
RseI CAYNNNNRTG 2 cut(s) 108, 114
SaqAI TTAA 4 cut(s) 95, 149, 222, 647
SatI GCNGC 1 cut(s) 166
Sau3AI GATC 1 cut(s) 118
Sau96I GGNCC 2 cut(s) 48, 624
ScaI AGTACT 1 cut(s) 530
SduI GDGCHC 1 cut(s) 103
SetI ASST 9 cut(s) 33, 65, 222, 233, 292, 352, 388, 519, 626
SfaNI GCATC 2 cut(s) 544, 575
SfcI CTRYAG 1 cut(s) 399
SinI GGWCC 2 cut(s) 48, 624
SmiMI CAYNNNNRTG 2 cut(s) 108, 114
SmlI CTYRAG 2 cut(s) 94, 221
SmoI CTYRAG 2 cut(s) 94, 221
Sse9I AATT 3 cut(s) 69, 198, 261
SsiI CCGC 2 cut(s) 370, 612
SspMI CTAG 3 cut(s) 239, 335, 389
TaaI ACNGT 3 cut(s) 91, 533, 677
TasI AATT 3 cut(s) 69, 198, 261
TatI WGTACW 2 cut(s) 528, 672
TfiI GAWTC 1 cut(s) 641
Tru1I TTAA 4 cut(s) 95, 149, 222, 647
Tru9I TTAA 4 cut(s) 95, 149, 222, 647
TscAI CASTG 1 cut(s) 94
TseFI GTSAC 1 cut(s) 248
TseI GCWGC 1 cut(s) 165
Tsp45I GTSAC 1 cut(s) 248
TspDTI ATGAA 2 cut(s) 192, 608
TspRI CASTG 1 cut(s) 94
Vha464I CTTAAG 2 cut(s) 94, 221
VpaK11BI GGWCC 2 cut(s) 48, 624
XagI CCTNNNNNAGG 1 cut(s) 619
XapI RAATTY 1 cut(s) 198
XbaI TCTAGA 1 cut(s) 238
XceI RCATGY 2 cut(s) 113, 323
XspI CTAG 3 cut(s) 239, 335, 389
ZrmI AGTACT 1 cut(s) 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.