Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030437

Physical Location & Seq

Genomic Coordinates Reverse (-)

64812784 .. 64813107

Gene Structure 324 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21449

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGATTTTTTTCAATGTCCTCATGTATAGCTCTCCTCTGTTCATCATGAGTGAAGTCATCAAAACAAAAAGTGTGAAATATATGCCATTCACGCTCTCAATTGCCAACTTTCTGAATGGTTGTTGTCGTACTTCCTATGCTCTTGTTGGAAAAATGGATTACTTTATTTTGGTTAGCAACGGTCTTGGTGCAATTGCTGGAGCAGTTCAATCTATGCAATATACTACAAAACTACACCAAAAGATGAAGACCTTTATGACAAGCCTACTAATGAAGTGCAACTCTCAAGCATGGTCTAATTATCACATATCCATCTATTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

107

Amino Acids

12.14

Weight (kDa)

9.52

Isoelectric Point (pI)

44.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	2 - 75	3.6e-17	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0030437)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0239351
rosa_rugosa	Rorug07G0327800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	130
AgsI	TTSAA	2 cut(s)	13, 209
AluBI	AGCT	1 cut(s)	30
AluI	AGCT	1 cut(s)	30
BbsI	GAAGAC	1 cut(s)	254
BccI	CCATC	1 cut(s)	320
BpiI	GAAGAC	1 cut(s)	254
BpmI	CTGGAG	1 cut(s)	219
BpuEI	CTTGAG	1 cut(s)	270
BseRI	GAGGAG	1 cut(s)	24
BspHI	TCATGA	1 cut(s)	45
Bst4CI	ACNGT	1 cut(s)	182
BstMWI	GCNNNNNNNGC	1 cut(s)	91
BstV2I	GAAGAC	1 cut(s)	254
CciI	TCATGA	1 cut(s)	45
Csp6I	GTAC	1 cut(s)	129
CviAII	CATG	3 cut(s)	22, 46, 291
CviJI	RGCY	2 cut(s)	30, 264
CviKI_1	RGCY	2 cut(s)	30, 264
CviQI	GTAC	1 cut(s)	129
FaeI	CATG	3 cut(s)	25, 49, 294
FatI	CATG	3 cut(s)	21, 45, 290
GsuI	CTGGAG	1 cut(s)	219
Hin1II	CATG	3 cut(s)	25, 49, 294
Hpy188I	TCNGA	1 cut(s)	114
Hpy188III	TCNNGA	1 cut(s)	46
HpyCH4III	ACNGT	1 cut(s)	182
HpyCH4V	TGCA	3 cut(s)	191, 217, 279
HpyF10VI	GCNNNNNNNGC	1 cut(s)	91
Hsp92II	CATG	3 cut(s)	25, 49, 294
LmnI	GCTCC	1 cut(s)	200
LpnPI	CCDG	1 cut(s)	183
MboII	GAAGA	1 cut(s)	259
MfeI	CAATTG	2 cut(s)	99, 192
MluCI	AATT	3 cut(s)	99, 192, 298
MmeI	TCCRAC	1 cut(s)	127
MnlI	CCTC	2 cut(s)	29, 45
MunI	CAATTG	2 cut(s)	99, 192
MwoI	GCNNNNNNNGC	1 cut(s)	91
NlaIII	CATG	3 cut(s)	25, 49, 294
PagI	TCATGA	1 cut(s)	45
RsaI	GTAC	1 cut(s)	130
RsaNI	GTAC	1 cut(s)	129
SetI	ASST	2 cut(s)	32, 254
SgeI	CNNG	9 cut(s)	34, 58, 103, 155, 197, 210, 273, 299, 303
SmlI	CTYRAG	1 cut(s)	285
SmoI	CTYRAG	1 cut(s)	285
Sse9I	AATT	3 cut(s)	99, 192, 298
TaaI	ACNGT	1 cut(s)	182
TasI	AATT	3 cut(s)	99, 192, 298
TspDTI	ATGAA	4 cut(s)	31, 260, 287, 309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.