Rorug07G0327800

Mediates both low-affinity uptake and efflux of sugar across the membrane

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0008561
Physical Location & Seq
Reverse (-)
35870924 .. 35876060
5137 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0327800.1

Sequence Viewer

Length: 816 bp
ATGTGGCAACTAGAATGCCATAAGATGATCTATCCATCAAAACTCATACATGCCTCAAAGCCTTTTGTCCCCCCTGTGCACTCTATTCCTCTCACCAGGACTAATGTTACAGAGGAAATTTCCATAGAAGGTTGCAACTTGAGCTTCTCAGTTGCAACAAAGCAAGGTAAAACCATACCCATTCTTAAAGATTGCTCGCTTCGCATTCCGTCAGGGCAGTTCTGGATGCTTCTTGGCCCCAATGGTTGTGGGAAATCTACCCTCCTAAAGATTTTGGCTGGTCTTTTGAATCCAACAAATGGAACTGTGTATGTGAAGAGGCCTAGGAGTTTTGTTTTTCAAAACCCAGACCATCAGGTAGTAATGCCTACAGTTGAAGCAGATGTGGCATTTGGTCTTGGTAAGTTCAACTTGACACGTGATGAAGTCAAATCTAGAGTGTCAAAAGCTGCAAATGCTGTTAGCATGTCGAAGTACCTGCAGAGGTCAGTTCAGACTCTTAGTGGTGGCCAGAAGCAAAGGGTTGCCATTGCCGGTGCTTTAGCTGAAGCATGCAAAGTTTTGTTATTGGATGAGCTGACAACATTTTTGGATGAAAGTGATCAGGTTGGGGTGATCAAAGCTGTGAGGAATTCCTTGGATAGTTCTGGGGAAGTTACCGCATTATGGGTCACTCATCGCCTGGAAGAACTTGAGTATGCAGATGGTGCTGTTTATATGGAAAATGGGAGAGTTGTGATGCATGGCGATCCAGCAAGCATTATGGATTTTATTAAAACCAGGCAATCAGCATATATCAAGGAAATCAATTCTTGA

Protein Analysis

271

Amino Acids

29.81

Weight (kDa)

8.74

Isoelectric Point (pI)

41.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 62 - 194 9.7e-29 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 486
AccB7I CCANNNNNTGG 1 cut(s) 299
AciI CCGC 1 cut(s) 660
AclWI GGATC 1 cut(s) 743
AcoI YGGCCR 1 cut(s) 508
AcsI RAATTY 2 cut(s) 117, 631
AcuI CTGAAG 1 cut(s) 567
AcvI CACGTG 1 cut(s) 419
AfaI GTAC 1 cut(s) 476
AfiI CCNNNNNNNGG 2 cut(s) 299, 666
AflIII ACRYGT 1 cut(s) 416
AgsI TTSAA 4 cut(s) 289, 341, 377, 409
AjnI CCWGG 3 cut(s) 95, 681, 779
AluBI AGCT 5 cut(s) 144, 449, 545, 577, 623
AluI AGCT 5 cut(s) 144, 449, 545, 577, 623
Alw21I GWGCWC 1 cut(s) 81
Alw44I GTGCAC 1 cut(s) 77
AlwI GGATC 1 cut(s) 743
AoxI GGCC 3 cut(s) 235, 320, 508
ApaLI GTGCAC 1 cut(s) 77
ApeKI GCWGC 1 cut(s) 449
ApoI RAATTY 2 cut(s) 117, 631
ArsI GACNNNNNNTTYG 2 cut(s) 571, 603
AspA2I CCTAGG 1 cut(s) 323
AspS9I GGNCC 1 cut(s) 236
AsuHPI GGTGA 2 cut(s) 85, 625
AvrII CCTAGG 1 cut(s) 323
BaeGI GKGCMC 1 cut(s) 81
BalI TGGCCA 1 cut(s) 510
BbrPI CACGTG 1 cut(s) 419
Bbv12I GWGCWC 1 cut(s) 81
BbvI GCAGC 1 cut(s) 436
BccI CCATC 3 cut(s) 43, 360, 698
BcgI CGANNNNNNTGC 2 cut(s) 460, 494
BciT130I CCWGG 3 cut(s) 97, 683, 781
BclI TGATCA 2 cut(s) 601, 615
BfaI CTAG 3 cut(s) 11, 324, 435
BfmI CTRYAG 2 cut(s) 369, 479
BfuAI ACCTGC 1 cut(s) 486
BisI GCNGC 1 cut(s) 450
BlnI CCTAGG 1 cut(s) 323
BlsI GCNGC 1 cut(s) 451
Bme1390I CCNGG 3 cut(s) 97, 683, 781
BmgT120I GGNCC 1 cut(s) 236
BmiI GGNNCC 1 cut(s) 238
BmrFI CCNGG 3 cut(s) 97, 683, 781
BmsI GCATC 2 cut(s) 216, 729
BpuEI CTTGAG 2 cut(s) 160, 713
BsaAI YACGTR 1 cut(s) 419
BsaJI CCNNGG 2 cut(s) 323, 636
Bsc4I CCNNNNNNNGG 2 cut(s) 299, 666
Bse118I RCCGGY 1 cut(s) 533
Bse3DI GCAATG 1 cut(s) 528
BseBI CCWGG 3 cut(s) 97, 683, 781
BseDI CCNNGG 2 cut(s) 323, 636
BseGI GGATG 3 cut(s) 231, 577, 598
BseLI CCNNNNNNNGG 2 cut(s) 299, 666
BseMI GCAATG 1 cut(s) 528
BseMII CTCAG 1 cut(s) 162
BseSI GKGCMC 1 cut(s) 81
BseXI GCAGC 1 cut(s) 436
BshFI GGCC 3 cut(s) 237, 322, 510
BsiHKAI GWGCWC 1 cut(s) 81
BsiSI CCGG 1 cut(s) 534
BslFI GGGAC 1 cut(s) 53
BslI CCNNNNNNNGG 2 cut(s) 299, 666
BsmFI GGGAC 1 cut(s) 53
BsmI GAATGC 2 cut(s) 20, 204
BsnI GGCC 3 cut(s) 237, 322, 510
Bsp1286I GDGCHC 1 cut(s) 81
Bsp143I GATC 4 cut(s) 27, 601, 615, 748
BspACI CCGC 1 cut(s) 660
BspANI GGCC 3 cut(s) 237, 322, 510
BspCNI CTCAG 1 cut(s) 161
BspLI GGNNCC 1 cut(s) 238
BspMAI CTGCAG 1 cut(s) 483
BspMI ACCTGC 1 cut(s) 486
BspPI GGATC 1 cut(s) 743
BsrDI GCAATG 1 cut(s) 528
BsrFI RCCGGY 1 cut(s) 533
BssAI RCCGGY 1 cut(s) 533
BssECI CCNNGG 2 cut(s) 323, 636
BssMI GATC 4 cut(s) 27, 601, 615, 748
BssT1I CCWWGG 2 cut(s) 323, 636
Bst2UI CCWGG 3 cut(s) 97, 683, 781
Bst4CI ACNGT 2 cut(s) 307, 373
Bst6I CTCTTC 1 cut(s) 311
BstAPI GCANNNNNTGC 1 cut(s) 707
BstBAI YACGTR 1 cut(s) 419
BstC8I GCNNGC 3 cut(s) 197, 553, 757
BstDEI CTNAG 2 cut(s) 148, 500
BstF5I GGATG 3 cut(s) 231, 577, 598
BstKTI GATC 4 cut(s) 30, 604, 618, 751
BstMBI GATC 4 cut(s) 27, 601, 615, 748
BstMWI GCNNNNNNNGC 5 cut(s) 141, 201, 386, 455, 707
BstNI CCWGG 3 cut(s) 97, 683, 781
BstNSI RCATGY 3 cut(s) 53, 469, 555
BstSCI CCNGG 3 cut(s) 95, 681, 779
BstSFI CTRYAG 2 cut(s) 369, 479
BstSLI GKGCMC 1 cut(s) 81
BstV1I GCAGC 1 cut(s) 436
BsuRI GGCC 3 cut(s) 237, 322, 510
BtgZI GCGATG 1 cut(s) 662
BtsCI GGATG 3 cut(s) 231, 577, 598
BveI ACCTGC 1 cut(s) 486
Cac8I GCNNGC 3 cut(s) 197, 553, 757
Cfr10I RCCGGY 1 cut(s) 533
Cfr13I GGNCC 1 cut(s) 236
Csp6I GTAC 1 cut(s) 475
CspCI CAANNNNNGTGG 2 cut(s) 229, 264
CviAII CATG 4 cut(s) 50, 466, 552, 743
CviQI GTAC 1 cut(s) 475
DdeI CTNAG 2 cut(s) 148, 500
DpnI GATC 4 cut(s) 29, 603, 617, 750
DpnII GATC 4 cut(s) 27, 601, 615, 748
EaeI YGGCCR 1 cut(s) 508
Eam1104I CTCTTC 1 cut(s) 311
EarI CTCTTC 1 cut(s) 311
Eco130I CCWWGG 2 cut(s) 323, 636
Eco147I AGGCCT 1 cut(s) 322
Eco57I CTGAAG 1 cut(s) 567
Eco72I CACGTG 1 cut(s) 419
EcoRI GAATTC 1 cut(s) 631
EcoRII CCWGG 3 cut(s) 95, 681, 779
EcoT14I CCWWGG 2 cut(s) 323, 636
EcoT22I ATGCAT 1 cut(s) 744
ErhI CCWWGG 2 cut(s) 323, 636
FaeI CATG 4 cut(s) 53, 469, 555, 746
FalI AAGNNNNNCTT 2 cut(s) 395, 427
FaqI GGGAC 1 cut(s) 53
FatI CATG 4 cut(s) 49, 465, 551, 742
FbaI TGATCA 2 cut(s) 601, 615
Fnu4HI GCNGC 1 cut(s) 450
FokI GGATG 3 cut(s) 238, 584, 605
Fsp4HI GCNGC 1 cut(s) 450
FspBI CTAG 3 cut(s) 11, 324, 435
GluI GCNGC 1 cut(s) 450
HaeIII GGCC 3 cut(s) 237, 322, 510
HapII CCGG 1 cut(s) 534
Hin1II CATG 4 cut(s) 53, 469, 555, 746
HinfI GANTC 2 cut(s) 289, 496
HpaII CCGG 1 cut(s) 534
HphI GGTGA 2 cut(s) 85, 625
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 1 cut(s) 495
Hpy188III TCNNGA 3 cut(s) 223, 435, 813
Hpy8I GTNNAC 1 cut(s) 79
HpyAV CCTTC 1 cut(s) 122
HpyCH4III ACNGT 2 cut(s) 307, 373
HpyCH4IV ACGT 1 cut(s) 418
HpyCH4V TGCA 8 cut(s) 79, 135, 155, 452, 481, 555, 701, 742
HpyF10VI GCNNNNNNNGC 5 cut(s) 141, 201, 386, 455, 707
HpyF3I CTNAG 2 cut(s) 148, 500
HpySE526I ACGT 1 cut(s) 418
Hsp92II CATG 4 cut(s) 53, 469, 555, 746
Ksp22I TGATCA 2 cut(s) 601, 615
Kzo9I GATC 4 cut(s) 27, 601, 615, 748
Lsp1109I GCAGC 1 cut(s) 436
LweI GCATC 2 cut(s) 216, 729
MaeI CTAG 3 cut(s) 11, 324, 435
MaeII ACGT 1 cut(s) 418
MaeIII GTNAC 3 cut(s) 106, 655, 670
MalI GATC 4 cut(s) 29, 603, 617, 750
MboI GATC 4 cut(s) 27, 601, 615, 748
MboII GAAGA 2 cut(s) 328, 698
MhlI GDGCHC 1 cut(s) 81
MlsI TGGCCA 1 cut(s) 510
MluCI AATT 3 cut(s) 117, 631, 808
MluNI TGGCCA 1 cut(s) 510
MlyI GAGTC 1 cut(s) 490
MmeI TCCRAC 1 cut(s) 317
MnlI CCTC 7 cut(s) 64, 99, 106, 272, 312, 477, 621
Mox20I TGGCCA 1 cut(s) 510
Mph1103I ATGCAT 1 cut(s) 744
MscI TGGCCA 1 cut(s) 510
MseI TTAA 2 cut(s) 186, 774
Msp20I TGGCCA 1 cut(s) 510
MspI CCGG 1 cut(s) 534
MspR9I CCNGG 3 cut(s) 97, 683, 781
Mva1269I GAATGC 2 cut(s) 20, 204
MvaI CCWGG 3 cut(s) 97, 683, 781
MwoI GCNNNNNNNGC 5 cut(s) 141, 201, 386, 455, 707
NdeII GATC 4 cut(s) 27, 601, 615, 748
NlaIII CATG 4 cut(s) 53, 469, 555, 746
NlaIV GGNNCC 1 cut(s) 238
NmuCI GTSAC 1 cut(s) 670
NsiI ATGCAT 1 cut(s) 744
NspI RCATGY 3 cut(s) 53, 469, 555
PaeI GCATGC 1 cut(s) 555
PceI AGGCCT 1 cut(s) 322
PctI GAATGC 2 cut(s) 20, 204
PfeI GAWTC 1 cut(s) 289
PflMI CCANNNNNTGG 1 cut(s) 299
PkrI GCNGC 1 cut(s) 451
PleI GAGTC 1 cut(s) 490
PmaCI CACGTG 1 cut(s) 419
PmlI CACGTG 1 cut(s) 419
PpsI GAGTC 1 cut(s) 490
Ppu21I YACGTR 1 cut(s) 419
Psp6I CCWGG 3 cut(s) 95, 681, 779
PspCI CACGTG 1 cut(s) 419
PspGI CCWGG 3 cut(s) 95, 681, 779
PspN4I GGNNCC 1 cut(s) 238
PspPI GGNCC 1 cut(s) 236
PstI CTGCAG 1 cut(s) 483
RsaI GTAC 1 cut(s) 476
RsaNI GTAC 1 cut(s) 475
SaqAI TTAA 2 cut(s) 186, 774
SatI GCNGC 1 cut(s) 450
Sau3AI GATC 4 cut(s) 27, 601, 615, 748
Sau96I GGNCC 1 cut(s) 236
SchI GAGTC 1 cut(s) 490
ScrFI CCNGG 3 cut(s) 97, 683, 781
SduI GDGCHC 1 cut(s) 81
SfaNI GCATC 2 cut(s) 216, 729
SfcI CTRYAG 2 cut(s) 369, 479
SmlI CTYRAG 2 cut(s) 139, 692
SmoI CTYRAG 2 cut(s) 139, 692
SphI GCATGC 1 cut(s) 555
Sse9I AATT 3 cut(s) 117, 631, 808
SseBI AGGCCT 1 cut(s) 322
SsiI CCGC 1 cut(s) 660
SspMI CTAG 3 cut(s) 11, 324, 435
StuI AGGCCT 1 cut(s) 322
StyD4I CCNGG 3 cut(s) 95, 681, 779
StyI CCWWGG 2 cut(s) 323, 636
TaaI ACNGT 2 cut(s) 307, 373
TaiI ACGT 1 cut(s) 421
TaqI TCGA 1 cut(s) 470
TasI AATT 3 cut(s) 117, 631, 808
TfiI GAWTC 1 cut(s) 289
Tru1I TTAA 2 cut(s) 186, 774
Tru9I TTAA 2 cut(s) 186, 774
TseFI GTSAC 1 cut(s) 670
TseI GCWGC 1 cut(s) 449
Tsp45I GTSAC 1 cut(s) 670
TspDTI ATGAA 2 cut(s) 438, 609
TspGWI ACGGA 1 cut(s) 198
Van91I CCANNNNNTGG 1 cut(s) 299
VneI GTGCAC 1 cut(s) 77
XapI RAATTY 2 cut(s) 117, 631
XbaI TCTAGA 1 cut(s) 434
XceI RCATGY 3 cut(s) 53, 469, 555
XmaJI CCTAGG 1 cut(s) 323
XspI CTAG 3 cut(s) 11, 324, 435
Zsp2I ATGCAT 1 cut(s) 744
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.