Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0008561

Physical Location & Seq

Genomic Coordinates Reverse (-)

3568046 .. 3572014

Gene Structure 3969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00220960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2085 bp

ATGGCAAAGATGGCCAATTATAAGGTGGAGAATAATGACTTGGGTTGTGGTTTTCTATCTGGGATTTTCCAGTGCTCAAGAAAATCTCTGGTTCATTCATTACCCACCAATATTAGCCAAAATCATTTGAAGGCACCAGACAATGATGATTCCAAGAAGCCTAAGGAGTCCAAAGAAGTTTCTTTCGCCATCCCCACCAATTCGGCTAAGCCTTCTCCGGATCAAGAAGTGAAGCACACCAGAAAGCCGAGCTTGGATCGTCCAAGGCCTTCTTCCACAGGTACTCACCAGAAGGTACTTCAAGCAAGAAGAAGCTCAGATGCTGGAAGAAGCTCAACATCTTCCAACGGTTCCAGGCAAATCAAGGTGTTTGTGGCGCCGGAGGAGAAAAAGATTCAGAGGGCATCTACTACTAGCTCGGCTGAGCTAAGTAGGAAGATCAATGATCACCATCAAGCCAATGAAGGCAAAGCTTTAGTCCGAGCCAGTTCAGGTAGTGTCATTCATTCAGGACAGTTGGGAAACTTGAGGCTGCAGCCTGGAATTTCGAGTCTGCTAACAAGTAATAGTACTCCTAATTCCACACCAAAAAGTAAAGCTGCTGTGATGGGAAACATTGTGAAGAAGAGAAGTGATGATCTTGGAGCTCTTAGTTCTGCGAATAAATTAGACCCTGAGGCTTTGAAGTCGATGGGAAATGAAGCATACAAGGAGAACAGATTCGGAGAGGCCTTGGCTTTATATGATCGAGCAATTGCTATGGATTCAAATAAGGCAGCTTATCACAGCAACAAAAGTGCTGCTTTGATTGGTTTAGGCCGCCTCATCGAGGCAGTTTTTGAATGCAAAGAAGCCATCCAGATTGAGCCTTCATATCACAAAGCTCATTATCGGCTAGCGACGGCATTTCTCAGACTAGGAGAAACAGAGAAAGCATTGGATCATTACAAACTTTCGGGTCCATATGCATATTCAAAAGACATAGATCAATGCCAGGCTCTTCAGAAATGCCTCAGCAGATGCATCGAAGCTCAGAAATTACAGGAGTGGAATGTTTTGTTAAATGAGACCCAGTTGGCAATGTCTTCAGGTGCCAATTCAGCTCCACAGGTCTTTGCTCTACAAGCTGAGGCCTTGTTGAAACTTCACAGACATGAAGAGGCATATTCTACCTACCAGAACAGACCAAATTTCAGCATTATTTTGTGCACTAAATTCTTTGGCATGGCAATCAGTGCTTATCTGTTAATGATTGGTGCACAAGTTTACTTGGCTGCTGGCAGATTTGAAGATGCAATGGCAGTCGCTCAACAGGCAGCACGACTCAATCCGGGTCACAAGGAAATTGGAACGGTGGTGAAGAGGGCTAGAACTGTTGCATCAGCTCGATCGAGTGGTAACCTTCTCTTCAAGGCATCAAAATTCACAGAAGCTAGTGTAGTGTATAGCCAAGGATTAGAGCAGGATCCATACAACTCGGTTTTGCTATGCAATCGAGCAGCTTGTCGTTCTAAGCTAGGCCAATATGAAAAGGCTGTTGAAGATTGCACTGCAGCTCTTAATCTGCAGCCTTGTTATAGCAAGGCTAGGCTGCGACGGGCTGATTGCAATGCCAAGTTAGAGAGGTGGGGAGCTTCAATTAAAGATTATGAGGTGCTGATAAGAGAAACTCCAGGAGATGAAGAAGTTGGGAAGGCTTTGTTTGAAGCCCAAATCCAGCTAAAAAGACAACATGGTGAAGATATTGGGGACATGAAATTTGGATCAAATTTTATTTCCATTGCCAACAATGAGCGTTTCAGACACTACGTGACGTCTCCAGGGATGTCAGTGGTGCTCTTCTGTAGCAAAACTAGACAGAAGCAAGTGTCGCAATCCCTGGAACAAGTCTGCAAAAGATTCCCTTCTGTTAACTTCCTCAAGGTGGAGGTAGAAGACCACCCTTACTTGGCAAAACTGGAGGACGTGAGCACCATCCCAGCCTTCAAGATATACAAAAATGGATCAAGGGTCAAAGAAATTCCAGGCAACCACCATGAATTATTAGAAAGCTCAGTCAAATTATACAGCGGTTCAGGATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010305 GO:0014070 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043401 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_11 TPR_16 TPR_2 TPR_7 TPR_8 Thioredoxin

Protein Analysis

694

Amino Acids

76.49

Weight (kDa)

9.32

Isoelectric Point (pI)

44.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_17	PF13431	482 - 513	9.5e-06	Tetratricopeptide repeat
TPR_1	PF00515	495 - 524	2.9e-06	Tetratricopeptide repeat
Thioredoxin	PF00085	596 - 683	1.1e-06	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008561)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78120 AT1G78120
fragaria_vesca	FvH4_5g37700 FvH4_5g37700 FvH4_5g37700 FvH4_5g37700 FvH4_5g37700
malus_domestica	MD08G1181000.v1.1 MD15G1366600.v1.1
prunus_persica	Prupe.1G514500_v2.0.a1 Prupe.1G514500_v2.0.a1 Prupe.1G514500_v2.0.a1
pyrus_communis	pycom08g15470 pycom15g32870
rosa_chinensis	RchiOBHm_Chr7g0239431
rosa_laevigata	RLG00000000758
rosa_roxburghii	Rroxscaffold_3G00220960
rosa_rugosa	Rorug07G0327800
rosa_samantha	Rh7AG481300 Rh7BG453800 Rh7CG499200 Rh7DG467300
rosa_wichuraiana	Rw7G040320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	21
AatII	GACGTC	1 cut(s)	1817
AccB1I	GGYRCC	3 cut(s)	133, 376, 1091
AccIII	TCCGGA	1 cut(s)	217
AciI	CCGC	2 cut(s)	820, 2070
AclWI	GGATC	7 cut(s)	228, 264, 948, 1460, 1473, 1771, 2011
AcoI	YGGCCR	1 cut(s)	12
AcsI	RAATTY	7 cut(s)	543, 1189, 1214, 1421, 1757, 1768, 2019
AcuI	CTGAAG	2 cut(s)	986, 1071
AcyI	GRCGYC	2 cut(s)	377, 1814
AdeI	CACNNNGTG	1 cut(s)	1810
AfaI	GTAC	3 cut(s)	283, 297, 571
AfiI	CCNNNNNNNGG	3 cut(s)	829, 1924, 1948
AjiI	CACGTC	1 cut(s)	1966
AjnI	CCWGG	7 cut(s)	353, 538, 993, 1672, 1819, 1878, 2023
AjuI	GAANNNNNNNTTGG	4 cut(s)	23, 55, 256, 288
Alw21I	GWGCWC	6 cut(s)	77, 649, 1211, 1261, 1839, 1973
Alw26I	GTCTC	2 cut(s)	1061, 1821
Alw44I	GTGCAC	2 cut(s)	1207, 1257
AlwI	GGATC	7 cut(s)	228, 264, 948, 1460, 1473, 1771, 2011
AlwNI	CAGNNNCTG	1 cut(s)	323
Aor13HI	TCCGGA	1 cut(s)	217
AoxI	GGCC	6 cut(s)	12, 266, 729, 817, 1131, 1519
ApaLI	GTGCAC	2 cut(s)	1207, 1257
ApoI	RAATTY	7 cut(s)	543, 1189, 1214, 1421, 1757, 1768, 2019
ArsI	GACNNNNNNTTYG	4 cut(s)	462, 494, 1742, 1774
Asp700I	GAANNNNTTC	1 cut(s)	719
AspLEI	GCGC	1 cut(s)	379
AspS9I	GGNCC	1 cut(s)	959
AsuC2I	CCSGG	1 cut(s)	1332
AsuHPI	GGTGA	4 cut(s)	278, 440, 1369, 1748
AsuNHI	GCTAGC	1 cut(s)	895
AvaII	GGWCC	1 cut(s)	959
AxyI	CCTNAGG	2 cut(s)	162, 675
BaeGI	GKGCMC	2 cut(s)	1211, 1261
BalI	TGGCCA	1 cut(s)	14
BamHI	GGATCC	1 cut(s)	1465
BanI	GGYRCC	3 cut(s)	133, 376, 1091
BanII	GRGCYC	1 cut(s)	649
BbsI	GAAGAC	2 cut(s)	1077, 1941
Bbv12I	GWGCWC	6 cut(s)	77, 649, 1211, 1261, 1839, 1973
BbvCI	CCTCAGC	2 cut(s)	1013, 1128
BccI	CCATC	7 cut(s)	4, 197, 459, 601, 685, 863, 1982
BceAI	ACGGC	1 cut(s)	918
BcgI	CGANNNNNNTGC	2 cut(s)	1006, 1040
BciT130I	CCWGG	7 cut(s)	355, 540, 995, 1674, 1821, 1880, 2025
BclI	TGATCA	1 cut(s)	445
BcnI	CCSGG	1 cut(s)	1332
BcoDI	GTCTC	2 cut(s)	1061, 1821
BfaI	CTAG	8 cut(s)	414, 896, 917, 1368, 1434, 1517, 1587, 1854
BfmI	CTRYAG	4 cut(s)	533, 1551, 1565, 1843
BfoI	RGCGCY	1 cut(s)	380
BlpI	GCTNAGC	2 cut(s)	207, 423
BmcAI	AGTACT	1 cut(s)	571
Bme1390I	CCNGG	8 cut(s)	355, 540, 995, 1332, 1674, 1821, 1880, 2025
Bme18I	GGWCC	1 cut(s)	959
BmgBI	CACGTC	1 cut(s)	1966
BmgT120I	GGNCC	1 cut(s)	959
BmiI	GGNNCC	6 cut(s)	135, 352, 378, 960, 1093, 1467
BmrFI	CCNGG	8 cut(s)	355, 540, 995, 1332, 1674, 1821, 1880, 2025
BmrI	ACTGGG	1 cut(s)	1066
BmsI	GCATC	7 cut(s)	310, 413, 1010, 1032, 1282, 1388, 1424
BmtI	GCTAGC	1 cut(s)	899
BmuI	ACTGGG	1 cut(s)	1066
BpiI	GAAGAC	2 cut(s)	1077, 1941
BpmI	CTGGAG	3 cut(s)	1656, 1803, 1979
Bpu10I	CCTNAGC	2 cut(s)	1013, 1128
Bpu1102I	GCTNAGC	2 cut(s)	207, 423
BpuEI	CTTGAG	3 cut(s)	61, 547, 1904
BpuMI	CCSGG	1 cut(s)	1332
BsaAI	YACGTR	1 cut(s)	1810
BsaBI	GATNNNNATC	1 cut(s)	450
BsaHI	GRCGYC	2 cut(s)	377, 1814
BsaI	GGTCTC	1 cut(s)	1061
BsaJI	CCNNGG	5 cut(s)	263, 732, 1450, 1820, 1878
BsaWI	WCCGGW	1 cut(s)	217
Bsc4I	CCNNNNNNNGG	3 cut(s)	829, 1924, 1948
Bse1I	ACTGG	4 cut(s)	70, 486, 1072, 1962
Bse21I	CCTNAGG	2 cut(s)	162, 675
Bse3DI	GCAATG	4 cut(s)	1086, 1302, 1615, 1779
Bse8I	GATNNNNATC	1 cut(s)	450
BseAI	TCCGGA	1 cut(s)	217
BseBI	CCWGG	7 cut(s)	355, 540, 995, 1674, 1821, 1880, 2025
BseDI	CCNNGG	5 cut(s)	263, 732, 1450, 1820, 1878
BseGI	GGATG	4 cut(s)	189, 855, 1830, 1974
BseJI	GATNNNNATC	1 cut(s)	450
BseLI	CCNNNNNNNGG	3 cut(s)	829, 1924, 1948
BseMI	GCAATG	4 cut(s)	1086, 1302, 1615, 1779
BseMII	CTCAG	8 cut(s)	330, 414, 666, 925, 1027, 1046, 1119, 2067
BseNI	ACTGG	4 cut(s)	70, 486, 1072, 1962
BseRI	GAGGAG	1 cut(s)	398
BseSI	GKGCMC	2 cut(s)	1211, 1261
BseYI	CCCAGC	1 cut(s)	1978
Bsh1285I	CGRYCG	1 cut(s)	1391
BshFI	GGCC	6 cut(s)	14, 268, 731, 819, 1133, 1521
BshNI	GGYRCC	3 cut(s)	133, 376, 1091
BsiEI	CGRYCG	1 cut(s)	1391
BsiHKAI	GWGCWC	6 cut(s)	77, 649, 1211, 1261, 1839, 1973
BsiSI	CCGG	3 cut(s)	218, 380, 1331
BslFI	GGGAC	1 cut(s)	1763
BslI	CCNNNNNNNGG	3 cut(s)	829, 1924, 1948
BsmAI	GTCTC	2 cut(s)	1061, 1821
BsmBI	CGTCTC	1 cut(s)	1821
BsmFI	GGGAC	1 cut(s)	1763
BsmI	GAATGC	1 cut(s)	848
BsnI	GGCC	6 cut(s)	14, 268, 731, 819, 1133, 1521
Bso31I	GGTCTC	1 cut(s)	1061
Bsp1286I	GDGCHC	6 cut(s)	77, 649, 1211, 1261, 1839, 1973
Bsp13I	TCCGGA	1 cut(s)	217
Bsp1720I	GCTNAGC	2 cut(s)	207, 423
BspACI	CCGC	2 cut(s)	820, 2070
BspANI	GGCC	6 cut(s)	14, 268, 731, 819, 1133, 1521
BspCNI	CTCAG	8 cut(s)	329, 415, 667, 924, 1026, 1045, 1120, 2066
BspEI	TCCGGA	1 cut(s)	217
BspLI	GGNNCC	6 cut(s)	135, 352, 378, 960, 1093, 1467
BspMAI	CTGCAG	3 cut(s)	537, 1555, 1569
BspOI	GCTAGC	1 cut(s)	899
BspPI	GGATC	7 cut(s)	228, 264, 948, 1460, 1473, 1771, 2011
BspQI	GCTCTTC	2 cut(s)	1005, 1844
BspT107I	GGYRCC	3 cut(s)	133, 376, 1091
BspTNI	GGTCTC	1 cut(s)	1061
BsrDI	GCAATG	4 cut(s)	1086, 1302, 1615, 1779
BsrI	ACTGG	4 cut(s)	70, 486, 1072, 1962
BssECI	CCNNGG	5 cut(s)	263, 732, 1450, 1820, 1878
BssNI	GRCGYC	2 cut(s)	377, 1814
BssT1I	CCWWGG	3 cut(s)	263, 732, 1450
Bst2UI	CCWGG	7 cut(s)	355, 540, 995, 1674, 1821, 1880, 2025
Bst4CI	ACNGT	4 cut(s)	350, 516, 1354, 1375
Bst6I	CTCTTC	6 cut(s)	620, 1005, 1152, 1355, 1412, 1844
BstACI	GRCGYC	2 cut(s)	377, 1814
BstAPI	GCANNNNNTGC	1 cut(s)	1235
BstBAI	YACGTR	1 cut(s)	1810
BstC8I	GCNNGC	2 cut(s)	897, 1279
BstEII	GGTNACC	1 cut(s)	1397
BstENI	CCTNNNNNAGG	1 cut(s)	827
BstF5I	GGATG	4 cut(s)	189, 855, 1830, 1974
BstH2I	RGCGCY	1 cut(s)	380
BstHHI	GCGC	1 cut(s)	379
BstMAI	GTCTC	2 cut(s)	1061, 1821
BstMCI	CGRYCG	1 cut(s)	1391
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 1100, 1124, 1235, 1313, 1870
BstNI	CCWGG	7 cut(s)	355, 540, 995, 1674, 1821, 1880, 2025
BstPI	GGTNACC	1 cut(s)	1397
BstSCI	CCNGG	8 cut(s)	353, 538, 993, 1330, 1672, 1819, 1878, 2023
BstSFI	CTRYAG	4 cut(s)	533, 1551, 1565, 1843
BstSLI	GKGCMC	2 cut(s)	1211, 1261
BstV2I	GAAGAC	2 cut(s)	1077, 1941
BstX2I	RGATCY	1 cut(s)	1465
BstYI	RGATCY	1 cut(s)	1465
Bsu36I	CCTNAGG	2 cut(s)	162, 675
BsuRI	GGCC	6 cut(s)	14, 268, 731, 819, 1133, 1521
BtrI	CACGTC	1 cut(s)	1966
BtsCI	GGATG	4 cut(s)	189, 855, 1830, 1974
BtsI	GCAGTG	1 cut(s)	1548
BtsIMutI	CAGTG	4 cut(s)	77, 1240, 1548, 1836
Cac8I	GCNNGC	2 cut(s)	897, 1279
CaiI	CAGNNNCTG	1 cut(s)	323
CfoI	GCGC	1 cut(s)	379
Cfr13I	GGNCC	1 cut(s)	959
Csp6I	GTAC	3 cut(s)	282, 296, 570
CviAII	CATG	5 cut(s)	1154, 1225, 1733, 1753, 2036
CviQI	GTAC	3 cut(s)	282, 296, 570
DinI	GGCGCC	1 cut(s)	378
DraIII	CACNNNGTG	1 cut(s)	1810
EaeI	YGGCCR	1 cut(s)	12
Eam1104I	CTCTTC	6 cut(s)	620, 1005, 1152, 1355, 1412, 1844
EarI	CTCTTC	6 cut(s)	620, 1005, 1152, 1355, 1412, 1844
Ecl136II	GAGCTC	1 cut(s)	647
Eco130I	CCWWGG	3 cut(s)	263, 732, 1450
Eco147I	AGGCCT	3 cut(s)	268, 731, 1133
Eco24I	GRGCYC	1 cut(s)	649
Eco31I	GGTCTC	1 cut(s)	1061
Eco47I	GGWCC	1 cut(s)	959
Eco53kI	GAGCTC	1 cut(s)	647
Eco57I	CTGAAG	2 cut(s)	986, 1071
Eco81I	CCTNAGG	2 cut(s)	162, 675
Eco91I	GGTNACC	1 cut(s)	1397
EcoICRI	GAGCTC	1 cut(s)	647
EcoNI	CCTNNNNNAGG	1 cut(s)	827
EcoO65I	GGTNACC	1 cut(s)	1397
EcoRII	CCWGG	7 cut(s)	353, 538, 993, 1672, 1819, 1878, 2023
EcoT14I	CCWWGG	3 cut(s)	263, 732, 1450
EcoT22I	ATGCAT	2 cut(s)	970, 1025
EcoT38I	GRGCYC	1 cut(s)	649
EgeI	GGCGCC	1 cut(s)	378
EheI	GGCGCC	1 cut(s)	378
ErhI	CCWWGG	3 cut(s)	263, 732, 1450
Esp3I	CGTCTC	1 cut(s)	1821
FaeI	CATG	5 cut(s)	1157, 1228, 1736, 1756, 2039
FalI	AAGNNNNNCTT	8 cut(s)	236, 268, 256, 288, 787, 819, 1888, 1920
FaqI	GGGAC	1 cut(s)	1763
FatI	CATG	5 cut(s)	1153, 1224, 1732, 1752, 2035
FauNDI	CATATG	1 cut(s)	964
FbaI	TGATCA	1 cut(s)	445
FokI	GGATG	4 cut(s)	176, 842, 1837, 1961
FriOI	GRGCYC	1 cut(s)	649
FspBI	CTAG	8 cut(s)	414, 896, 917, 1368, 1434, 1517, 1587, 1854
GlaI	GCGC	1 cut(s)	378
GsaI	CCCAGC	1 cut(s)	1982
GsuI	CTGGAG	3 cut(s)	1656, 1803, 1979
HaeII	RGCGCY	1 cut(s)	380
HaeIII	GGCC	6 cut(s)	14, 268, 731, 819, 1133, 1521
HapII	CCGG	3 cut(s)	218, 380, 1331
HhaI	GCGC	1 cut(s)	379
Hin1I	GRCGYC	2 cut(s)	377, 1814
Hin1II	CATG	5 cut(s)	1157, 1228, 1736, 1756, 2039
Hin6I	GCGC	1 cut(s)	377
HinP1I	GCGC	1 cut(s)	377
HincII	GTYRAC	1 cut(s)	1912
HindII	GTYRAC	1 cut(s)	1912
HindIII	AAGCTT	1 cut(s)	471
HinfI	GANTC	8 cut(s)	149, 167, 394, 550, 720, 764, 1323, 1899
HpaI	GTTAAC	1 cut(s)	1912
HpaII	CCGG	3 cut(s)	218, 380, 1331
HphI	GGTGA	4 cut(s)	278, 440, 1369, 1748
Hpy166II	GTNNAC	4 cut(s)	1209, 1259, 1267, 1912
Hpy188I	TCNGA	8 cut(s)	319, 399, 482, 725, 914, 1005, 1035, 1802
Hpy188III	TCNNGA	7 cut(s)	78, 218, 224, 510, 859, 1987, 2076
Hpy8I	GTNNAC	4 cut(s)	1209, 1259, 1267, 1912
Hpy99I	CGWCG	2 cut(s)	904, 1599
HpyCH4III	ACNGT	4 cut(s)	350, 516, 1354, 1375
HpyCH4IV	ACGT	3 cut(s)	1809, 1814, 1965
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 1100, 1124, 1235, 1313, 1870
HpySE526I	ACGT	3 cut(s)	1809, 1814, 1965
Hsp92I	GRCGYC	2 cut(s)	377, 1814
Hsp92II	CATG	5 cut(s)	1157, 1228, 1736, 1756, 2039
HspAI	GCGC	1 cut(s)	377
KasI	GGCGCC	1 cut(s)	376
Kpn2I	TCCGGA	1 cut(s)	217
Ksp22I	TGATCA	1 cut(s)	445
KspAI	GTTAAC	1 cut(s)	1912
LguI	GCTCTTC	2 cut(s)	1005, 1844
LmnI	GCTCC	3 cut(s)	644, 1108, 1631
LweI	GCATC	7 cut(s)	310, 413, 1010, 1032, 1282, 1388, 1424
MaeI	CTAG	8 cut(s)	414, 896, 917, 1368, 1434, 1517, 1587, 1854
MaeII	ACGT	3 cut(s)	1809, 1814, 1965
MaeIII	GTNAC	3 cut(s)	1334, 1397, 1810
MfeI	CAATTG	1 cut(s)	753
MflI	RGATCY	1 cut(s)	1465
MhlI	GDGCHC	6 cut(s)	77, 649, 1211, 1261, 1839, 1973
MlsI	TGGCCA	1 cut(s)	14
MluNI	TGGCCA	1 cut(s)	14
Mly113I	GGCGCC	1 cut(s)	377
MlyI	GAGTC	3 cut(s)	176, 559, 1317
MmeI	TCCRAC	1 cut(s)	369
Mox20I	TGGCCA	1 cut(s)	14
Mph1103I	ATGCAT	2 cut(s)	970, 1025
MroI	TCCGGA	1 cut(s)	217
MroXI	GAANNNNTTC	1 cut(s)	719
MscI	TGGCCA	1 cut(s)	14
MseI	TTAA	5 cut(s)	1061, 1247, 1560, 1641, 1911
MslI	CAYNNNNRTG	1 cut(s)	1152
Msp20I	TGGCCA	1 cut(s)	14
MspA1I	CMGCKG	1 cut(s)	2070
MspI	CCGG	3 cut(s)	218, 380, 1331
MspR9I	CCNGG	8 cut(s)	355, 540, 995, 1332, 1674, 1821, 1880, 2025
MunI	CAATTG	1 cut(s)	753
Mva1269I	GAATGC	1 cut(s)	848
MvaI	CCWGG	7 cut(s)	355, 540, 995, 1674, 1821, 1880, 2025
MwoI	GCNNNNNNNGC	6 cut(s)	11, 1100, 1124, 1235, 1313, 1870
NarI	GGCGCC	1 cut(s)	377
NciI	CCSGG	1 cut(s)	1332
NdeI	CATATG	1 cut(s)	964
NheI	GCTAGC	1 cut(s)	895
NlaIII	CATG	5 cut(s)	1157, 1228, 1736, 1756, 2039
NlaIV	GGNNCC	6 cut(s)	135, 352, 378, 960, 1093, 1467
NmeAIII	GCCGAG	2 cut(s)	273, 398
NmuCI	GTSAC	2 cut(s)	1334, 1810
NsiI	ATGCAT	2 cut(s)	970, 1025
PceI	AGGCCT	3 cut(s)	268, 731, 1133
PciSI	GCTCTTC	2 cut(s)	1005, 1844
PctI	GAATGC	1 cut(s)	848
PdmI	GAANNNNTTC	1 cut(s)	719
PfeI	GAWTC	5 cut(s)	149, 394, 720, 764, 1899
PfoI	TCCNGGA	1 cut(s)	1672
Ple19I	CGATCG	1 cut(s)	1391
PleI	GAGTC	3 cut(s)	175, 558, 1317
PluTI	GGCGCC	1 cut(s)	380
PpsI	GAGTC	3 cut(s)	175, 558, 1317
Ppu21I	YACGTR	1 cut(s)	1810
PsiI	TTATAA	1 cut(s)	21
Psp124BI	GAGCTC	1 cut(s)	649
Psp6I	CCWGG	7 cut(s)	353, 538, 993, 1672, 1819, 1878, 2023
PspEI	GGTNACC	1 cut(s)	1397
PspFI	CCCAGC	1 cut(s)	1978
PspGI	CCWGG	7 cut(s)	353, 538, 993, 1672, 1819, 1878, 2023
PspN4I	GGNNCC	6 cut(s)	135, 352, 378, 960, 1093, 1467
PspPI	GGNCC	1 cut(s)	959
PstI	CTGCAG	3 cut(s)	537, 1555, 1569
PstNI	CAGNNNCTG	1 cut(s)	323
PsuI	RGATCY	1 cut(s)	1465
PvuI	CGATCG	1 cut(s)	1391
RsaI	GTAC	3 cut(s)	283, 297, 571
RsaNI	GTAC	3 cut(s)	282, 296, 570
RseI	CAYNNNNRTG	1 cut(s)	1152
SacI	GAGCTC	1 cut(s)	649
SapI	GCTCTTC	2 cut(s)	1005, 1844
SaqAI	TTAA	5 cut(s)	1061, 1247, 1560, 1641, 1911
Sau96I	GGNCC	1 cut(s)	959
ScaI	AGTACT	1 cut(s)	571
SchI	GAGTC	3 cut(s)	176, 559, 1317
ScrFI	CCNGG	8 cut(s)	355, 540, 995, 1332, 1674, 1821, 1880, 2025
SduI	GDGCHC	6 cut(s)	77, 649, 1211, 1261, 1839, 1973
SfaNI	GCATC	7 cut(s)	310, 413, 1010, 1032, 1282, 1388, 1424
SfcI	CTRYAG	4 cut(s)	533, 1551, 1565, 1843
SfoI	GGCGCC	1 cut(s)	378
SinI	GGWCC	1 cut(s)	959
SmiMI	CAYNNNNRTG	1 cut(s)	1152
SmlI	CTYRAG	3 cut(s)	76, 526, 1919
SmoI	CTYRAG	3 cut(s)	76, 526, 1919
SseBI	AGGCCT	3 cut(s)	268, 731, 1133
SsiI	CCGC	2 cut(s)	820, 2070
SspDI	GGCGCC	1 cut(s)	376
SspI	AATATT	1 cut(s)	112
SspMI	CTAG	8 cut(s)	414, 896, 917, 1368, 1434, 1517, 1587, 1854
SstI	GAGCTC	1 cut(s)	649
StuI	AGGCCT	3 cut(s)	268, 731, 1133
StyD4I	CCNGG	8 cut(s)	353, 538, 993, 1330, 1672, 1819, 1878, 2023
StyI	CCWWGG	3 cut(s)	263, 732, 1450
TaaI	ACNGT	4 cut(s)	350, 516, 1354, 1375
TaiI	ACGT	3 cut(s)	1812, 1817, 1968
TaqI	TCGA	8 cut(s)	548, 689, 748, 828, 1026, 1387, 1391, 1495
TatI	WGTACW	1 cut(s)	569
TauI	GCSGC	1 cut(s)	822
TfiI	GAWTC	5 cut(s)	149, 394, 720, 764, 1899
Tru1I	TTAA	5 cut(s)	1061, 1247, 1560, 1641, 1911
Tru9I	TTAA	5 cut(s)	1061, 1247, 1560, 1641, 1911
TscAI	CASTG	4 cut(s)	77, 1240, 1555, 1836
TseFI	GTSAC	2 cut(s)	1334, 1810
Tsp45I	GTSAC	2 cut(s)	1334, 1810
TspRI	CASTG	4 cut(s)	77, 1240, 1555, 1836
VneI	GTGCAC	2 cut(s)	1207, 1257
VpaK11BI	GGWCC	1 cut(s)	959
XagI	CCTNNNNNAGG	1 cut(s)	827
XapI	RAATTY	7 cut(s)	543, 1189, 1214, 1421, 1757, 1768, 2019
XcmI	CCANNNNNNNNNTGG	1 cut(s)	22
XmnI	GAANNNNTTC	1 cut(s)	719
XspI	CTAG	8 cut(s)	414, 896, 917, 1368, 1434, 1517, 1587, 1854
ZraI	GACGTC	1 cut(s)	1815
ZrmI	AGTACT	1 cut(s)	571
Zsp2I	ATGCAT	2 cut(s)	970, 1025

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.