AT1G78120

Tetratricopeptide repeat

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
29393813 .. 29396105
2293 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G78120.1

Sequence Viewer

Length: 1593 bp
ATGGCAAAATCGAAGAAAATTTCTACAGGTCAAATATTTGGTTGTGAGAGTCTCCTTGGGTGCATTTTCCAGAGCTGGAGCCCTCGCCGTCGAAAACCCTCTTTACCGGAAAAGGATCATCGGGCAAAAGATAACTTGTCTTCCAAGTCATCAACAACCGTTACAAACCCTAAAATCCTCCCAAGAAAATCCACCGATACTTCTTCTCAACCAAAGAAATCTGACTCCCAGAAACCCCAACAAAAGCCAAAACCAGATGAGAATCACCCGCGAAAATCATCGGAATCCGCCAGAAAATCATCTGATTCCGCAAGAAAATCGATTTCGTCAGGCTCATCAAGAACAGAGAGCAAGAGATTCTCACTTAACGGCGTTATGGGAAACATCATCGTGAAACCACAGCCAGCCGTTAAAACTGACGTGACACAGACGAAAAGTCGGTGGGAGGGTAAACCGGTAAATCACAGACTCGATCCAGAGACTCTGAAGAAAATGGGAAACGAAGAGTATTGTCGTGGGAGGTTTGGACAAGCTCTCGTGTTTTACGAGAGAGCCATTTCAGCTGACCCCAAAACGCCGACGTATTGGTCTAACAAATCCGCCGCTTTGATCAGTCTCGGTCGTCTTCTTGAAGCTTCTGATGCTTGTGAAGAAGCTTTAAGACTAAACCCAACTTACGAGAGAGCTCATCAGAGACTAGCTTCCCTCCAACTCAGATTGGGTGAGGTTGAGAAAGCTTTGTGTCACTATAATGAAGCTGGAAAATATACAGAGACAAAACATATTGAACAAGTTGAAGATGTTGTTAAATGCTTAAGGAGGTGTGACGAAGCTCGAAGATCAAAGGAATGGAATGTTGCATTGAAAGAGACTCTTTTTGCGATATCATATGGAGCAGATTCTTCTCCTCGGGTCTATGCACTCCAAACCGAGGCTTTATTGCATCTTCAGCGACACGAGGAAGCATACAGCGTGTATCAGAAAGGAACAAAACGCTTCGACATCGATAGTTTCATAAAGATTTTTGGTCTTTCCCTCACTTCTTACCTCTTGATGGTCGGAGCTCAGGTCTACATAGCAGTAGGAAGGTTTGAAGATGCAGTAACGGCGTCAAGGCAAGCGGCTCGACTTGATCCAAGCAGCGAAGAAGTAAACGCGGTGGCTAGAAAAGCGAGAGCGGTTGCTTCTGCAAGACTGAGTGGAAATTTGCTTTTCAACGCATCAAAATTTGAAGGGGCTAGCGTGGTTTACACGGAAGGACTTGAGAACGATCCATATAATGCTCTCTTGCTCTGTAACAGAGCTGCTTCAAGATTCAAGCTTGATCTGTTCGAGAAAGCTATTGAAGATTGCACATTGGCTCTCAGTCTCCAGCCATCGTACCGGAAGGCGAGGCGGCGCAGGGCAGATTCTTATGCCAAGTTGGAGAAATGGCAACACGCGATTCAAGATTATGAGTTGTTGATGATGGAGACACCTGAAGACGAAGAGACTAGAAGAGCCTTAACTGAGGTGAATGTCCGGTTTAAGAAACAGACCGGTGGAGATGTCCGGTTTAAAGGAGTCGGCTCGGAATTGGTTGTGGCTAATTGA

Protein Analysis

530

Amino Acids

59.62

Weight (kDa)

9.5

Isoelectric Point (pI)

50.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 586
AccBSI CCGCTC 1 cut(s) 1178
AccI GTMKAC 1 cut(s) 1071
AccII CGCG 3 cut(s) 271, 1157, 1442
AciI CCGC 9 cut(s) 269, 288, 309, 600, 603, 1121, 1157, 1178, 1396
AclWI GGATC 4 cut(s) 123, 467, 1127, 1265
AcsI RAATTY 3 cut(s) 18, 1204, 1226
AcuI CTGAAG 3 cut(s) 506, 932, 1500
AcyI GRCGYC 1 cut(s) 1109
AfaI GTAC 1 cut(s) 1382
AfiI CCNNNNNNNGG 2 cut(s) 931, 1054
AflII CTTAAG 1 cut(s) 814
AgeI ACCGGT 2 cut(s) 454, 1538
AhdI GACNNNNNGTC 1 cut(s) 435
AjiI CACGTC 1 cut(s) 421
Alw21I GWGCWC 2 cut(s) 688, 1066
Alw26I GTCTC 9 cut(s) 56, 473, 620, 688, 767, 863, 1373, 1466, 1484
AlwI GGATC 4 cut(s) 123, 467, 1127, 1265
Ama87I CYCGRG 1 cut(s) 909
ApeKI GCWGC 2 cut(s) 1140, 1304
ApoI RAATTY 3 cut(s) 18, 1204, 1226
AsiGI ACCGGT 2 cut(s) 454, 1538
AspLEI GCGC 1 cut(s) 1401
AsuHPI GGTGA 3 cut(s) 257, 734, 1525
AsuNHI GCTAGC 1 cut(s) 1238
AvaI CYCGRG 1 cut(s) 909
BanII GRGCYC 3 cut(s) 83, 688, 1066
BauI CACGAG 2 cut(s) 536, 956
BbsI GAAGAC 3 cut(s) 132, 617, 1488
Bbv12I GWGCWC 2 cut(s) 688, 1066
BbvI GCAGC 2 cut(s) 1152, 1291
BccI CCATC 3 cut(s) 1048, 1384, 1462
BceAI ACGGC 4 cut(s) 72, 385, 392, 1122
BcgI CGANNNNNNTGC 4 cut(s) 300, 334, 1106, 1140
BclI TGATCA 1 cut(s) 609
BcoDI GTCTC 9 cut(s) 56, 473, 620, 688, 767, 863, 1373, 1466, 1484
BfaI CTAG 4 cut(s) 698, 1164, 1239, 1494
BfmI CTRYAG 1 cut(s) 24
BfrI CTTAAG 1 cut(s) 814
BisI GCNGC 5 cut(s) 603, 1122, 1141, 1305, 1397
BlsI GCNGC 5 cut(s) 604, 1123, 1142, 1306, 1398
BmeRI GACNNNNNGTC 1 cut(s) 435
BmeT110I CYCGRG 1 cut(s) 909
BmgBI CACGTC 1 cut(s) 421
BmiI GGNNCC 1 cut(s) 80
BmsI GCATC 4 cut(s) 631, 952, 1087, 1229
BmtI GCTAGC 1 cut(s) 1242
BpiI GAAGAC 3 cut(s) 132, 617, 1488
BpmI CTGGAG 2 cut(s) 97, 1355
Bpu10I CCTNAGC 1 cut(s) 1065
BpuEI CTTGAG 1 cut(s) 1283
Bsa29I ATCGAT 2 cut(s) 320, 1005
BsaBI GATNNNNATC 1 cut(s) 261
BsaHI GRCGYC 1 cut(s) 1109
BsaJI CCNNGG 3 cut(s) 55, 908, 930
BsaWI WCCGGW 6 cut(s) 106, 454, 1383, 1521, 1538, 1551
BsaXI ACNNNNNCTCC 2 cut(s) 1053, 1083
Bsc4I CCNNNNNNNGG 2 cut(s) 931, 1054
Bse118I RCCGGY 2 cut(s) 454, 1538
Bse8I GATNNNNATC 1 cut(s) 261
BseCI ATCGAT 2 cut(s) 320, 1005
BseDI CCNNGG 3 cut(s) 55, 908, 930
BseJI GATNNNNATC 1 cut(s) 261
BseLI CCNNNNNNNGG 2 cut(s) 931, 1054
BseMII CTCAG 5 cut(s) 727, 1079, 1187, 1378, 1500
BseRI GAGGAG 1 cut(s) 897
BseXI GCAGC 2 cut(s) 1152, 1291
Bsh1236I CGCG 3 cut(s) 271, 1157, 1442
Bsh1285I CGRYCG 1 cut(s) 622
BshTI ACCGGT 2 cut(s) 454, 1538
BshVI ATCGAT 2 cut(s) 320, 1005
BsiEI CGRYCG 1 cut(s) 622
BsiHKAI GWGCWC 2 cut(s) 688, 1066
BsiHKCI CYCGRG 1 cut(s) 909
BsiSI CCGG 6 cut(s) 107, 455, 1384, 1522, 1539, 1552
BslI CCNNNNNNNGG 2 cut(s) 931, 1054
BsmAI GTCTC 9 cut(s) 56, 473, 620, 688, 767, 863, 1373, 1466, 1484
BsoBI CYCGRG 1 cut(s) 909
Bsp1286I GDGCHC 3 cut(s) 83, 688, 1066
Bsp143I GATC 7 cut(s) 115, 472, 609, 839, 1132, 1270, 1324
BspACI CCGC 9 cut(s) 269, 288, 309, 600, 603, 1121, 1157, 1178, 1396
BspCNI CTCAG 5 cut(s) 726, 1078, 1188, 1377, 1501
BspDI ATCGAT 2 cut(s) 320, 1005
BspFNI CGCG 3 cut(s) 271, 1157, 1442
BspLI GGNNCC 1 cut(s) 80
BspOI GCTAGC 1 cut(s) 1242
BspPI GGATC 4 cut(s) 123, 467, 1127, 1265
BspQI GCTCTTC 1 cut(s) 1492
BspTI CTTAAG 1 cut(s) 814
BsrBI CCGCTC 1 cut(s) 1178
BsrFI RCCGGY 2 cut(s) 454, 1538
BssAI RCCGGY 2 cut(s) 454, 1538
BssECI CCNNGG 3 cut(s) 55, 908, 930
BssMI GATC 7 cut(s) 115, 472, 609, 839, 1132, 1270, 1324
BssNI GRCGYC 1 cut(s) 1109
BssSI CACGAG 2 cut(s) 536, 956
BssT1I CCWWGG 1 cut(s) 55
Bst2BI CACGAG 2 cut(s) 536, 956
Bst4CI ACNGT 1 cut(s) 160
Bst6I CTCTTC 3 cut(s) 498, 1482, 1492
BstACI GRCGYC 1 cut(s) 1109
BstAFI CTTAAG 1 cut(s) 814
BstC8I GCNNGC 3 cut(s) 405, 1119, 1240
BstDEI CTNAG 5 cut(s) 713, 1065, 1196, 1364, 1509
BstFNI CGCG 3 cut(s) 271, 1157, 1442
BstHHI GCGC 1 cut(s) 1401
BstKTI GATC 7 cut(s) 118, 475, 612, 842, 1135, 1273, 1327
BstMAI GTCTC 9 cut(s) 56, 473, 620, 688, 767, 863, 1373, 1466, 1484
BstMBI GATC 7 cut(s) 115, 472, 609, 839, 1132, 1270, 1324
BstMCI CGRYCG 1 cut(s) 622
BstMWI GCNNNNNNNGC 5 cut(s) 560, 641, 949, 1106, 1169
BstSFI CTRYAG 1 cut(s) 24
BstUI CGCG 3 cut(s) 271, 1157, 1442
BstV1I GCAGC 2 cut(s) 1152, 1291
BstV2I GAAGAC 3 cut(s) 132, 617, 1488
Bsu15I ATCGAT 2 cut(s) 320, 1005
BsuTUI ATCGAT 2 cut(s) 320, 1005
BtrI CACGTC 1 cut(s) 421
Cac8I GCNNGC 3 cut(s) 405, 1119, 1240
CfoI GCGC 1 cut(s) 1401
Cfr10I RCCGGY 2 cut(s) 454, 1538
ClaI ATCGAT 2 cut(s) 320, 1005
CseI GACGC 1 cut(s) 1098
Csp6I GTAC 1 cut(s) 1381
CspAI ACCGGT 2 cut(s) 454, 1538
CviQI GTAC 1 cut(s) 1381
DdeI CTNAG 5 cut(s) 713, 1065, 1196, 1364, 1509
DpnI GATC 7 cut(s) 117, 474, 611, 841, 1134, 1272, 1326
DpnII GATC 7 cut(s) 115, 472, 609, 839, 1132, 1270, 1324
DraI TTTAAA 1 cut(s) 1558
DrdI GACNNNNNNGTC 1 cut(s) 586
DriI GACNNNNNGTC 1 cut(s) 435
DseDI GACNNNNNNGTC 1 cut(s) 586
Eam1104I CTCTTC 3 cut(s) 498, 1482, 1492
Eam1105I GACNNNNNGTC 1 cut(s) 435
EarI CTCTTC 3 cut(s) 498, 1482, 1492
EciI GGCGGA 2 cut(s) 277, 589
Ecl136II GAGCTC 2 cut(s) 686, 1064
Eco130I CCWWGG 1 cut(s) 55
Eco24I GRGCYC 3 cut(s) 83, 688, 1066
Eco32I GATATC 1 cut(s) 885
Eco53kI GAGCTC 2 cut(s) 686, 1064
Eco57I CTGAAG 3 cut(s) 506, 932, 1500
Eco88I CYCGRG 1 cut(s) 909
EcoICRI GAGCTC 2 cut(s) 686, 1064
EcoRV GATATC 1 cut(s) 885
EcoT14I CCWWGG 1 cut(s) 55
EcoT38I GRGCYC 3 cut(s) 83, 688, 1066
ErhI CCWWGG 1 cut(s) 55
FalI AAGNNNNNCTT 2 cut(s) 858, 890
FauI CCCGC 1 cut(s) 276
FauNDI CATATG 1 cut(s) 889
FbaI TGATCA 1 cut(s) 609
FblI GTMKAC 1 cut(s) 1071
Fnu4HI GCNGC 5 cut(s) 603, 1122, 1141, 1305, 1397
FriOI GRGCYC 3 cut(s) 83, 688, 1066
Fsp4HI GCNGC 5 cut(s) 603, 1122, 1141, 1305, 1397
FspBI CTAG 4 cut(s) 698, 1164, 1239, 1494
GlaI GCGC 1 cut(s) 1400
GluI GCNGC 5 cut(s) 603, 1122, 1141, 1305, 1397
GsuI CTGGAG 2 cut(s) 97, 1355
HapII CCGG 6 cut(s) 107, 455, 1384, 1522, 1539, 1552
HgaI GACGC 1 cut(s) 1098
HhaI GCGC 1 cut(s) 1401
Hin1I GRCGYC 1 cut(s) 1109
Hin6I GCGC 1 cut(s) 1399
HinP1I GCGC 1 cut(s) 1399
HindIII AAGCTT 4 cut(s) 633, 654, 735, 1319
HpaII CCGG 6 cut(s) 107, 455, 1384, 1522, 1539, 1552
HphI GGTGA 3 cut(s) 257, 734, 1525
Hpy166II GTNNAC 4 cut(s) 452, 1072, 1153, 1249
Hpy188III TCNNGA 9 cut(s) 70, 339, 391, 476, 629, 1051, 1311, 1333, 1448
Hpy8I GTNNAC 4 cut(s) 452, 1072, 1153, 1249
Hpy99I CGWCG 2 cut(s) 93, 583
HpyAV CCTTC 4 cut(s) 1080, 1226, 1250, 1381
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4IV ACGT 2 cut(s) 420, 581
HpyCH4V TGCA 7 cut(s) 63, 860, 920, 943, 1100, 1190, 1353
HpyF10VI GCNNNNNNNGC 5 cut(s) 560, 641, 949, 1106, 1169
HpyF3I CTNAG 5 cut(s) 713, 1065, 1196, 1364, 1509
HpySE526I ACGT 2 cut(s) 420, 581
Hsp92I GRCGYC 1 cut(s) 1109
HspAI GCGC 1 cut(s) 1399
Ksp22I TGATCA 1 cut(s) 609
Kzo9I GATC 7 cut(s) 115, 472, 609, 839, 1132, 1270, 1324
LguI GCTCTTC 1 cut(s) 1492
LmnI GCTCC 3 cut(s) 78, 893, 1061
Lsp1109I GCAGC 2 cut(s) 1152, 1291
LweI GCATC 4 cut(s) 631, 952, 1087, 1229
MaeI CTAG 4 cut(s) 698, 1164, 1239, 1494
MaeII ACGT 2 cut(s) 420, 581
MaeIII GTNAC 6 cut(s) 160, 421, 743, 824, 1102, 1295
MalI GATC 7 cut(s) 117, 474, 611, 841, 1134, 1272, 1326
MbiI CCGCTC 1 cut(s) 1178
MboI GATC 7 cut(s) 115, 472, 609, 839, 1132, 1270, 1324
MhlI GDGCHC 3 cut(s) 83, 688, 1066
MluCI AATT 5 cut(s) 18, 1204, 1226, 1574, 1588
MlyI GAGTC 6 cut(s) 58, 218, 462, 475, 865, 1572
MmeI TCCRAC 3 cut(s) 733, 1039, 1404
MseI TTAA 8 cut(s) 366, 411, 659, 807, 815, 1505, 1527, 1557
MslI CAYNNNNRTG 2 cut(s) 389, 750
MspA1I CMGCKG 1 cut(s) 563
MspCI CTTAAG 1 cut(s) 814
MspI CCGG 6 cut(s) 107, 455, 1384, 1522, 1539, 1552
MvnI CGCG 3 cut(s) 271, 1157, 1442
MwoI GCNNNNNNNGC 5 cut(s) 560, 641, 949, 1106, 1169
NdeI CATATG 1 cut(s) 889
NdeII GATC 7 cut(s) 115, 472, 609, 839, 1132, 1270, 1324
NheI GCTAGC 1 cut(s) 1238
NlaIV GGNNCC 1 cut(s) 80
NmuCI GTSAC 3 cut(s) 421, 743, 824
PciSI GCTCTTC 1 cut(s) 1492
PcsI WCGNNNNNNNCGW 1 cut(s) 543
PfeI GAWTC 8 cut(s) 262, 284, 305, 357, 899, 1314, 1409, 1444
PinAI ACCGGT 2 cut(s) 454, 1538
PkrI GCNGC 5 cut(s) 604, 1123, 1142, 1306, 1398
PleI GAGTC 6 cut(s) 57, 218, 462, 475, 865, 1571
PpsI GAGTC 6 cut(s) 57, 218, 462, 475, 865, 1571
Psp124BI GAGCTC 2 cut(s) 688, 1066
PspN4I GGNNCC 1 cut(s) 80
PvuII CAGCTG 1 cut(s) 563
RsaI GTAC 1 cut(s) 1382
RsaNI GTAC 1 cut(s) 1381
RseI CAYNNNNRTG 2 cut(s) 389, 750
SacI GAGCTC 2 cut(s) 688, 1066
SapI GCTCTTC 1 cut(s) 1492
SaqAI TTAA 8 cut(s) 366, 411, 659, 807, 815, 1505, 1527, 1557
SatI GCNGC 5 cut(s) 603, 1122, 1141, 1305, 1397
Sau3AI GATC 7 cut(s) 115, 472, 609, 839, 1132, 1270, 1324
SchI GAGTC 6 cut(s) 58, 218, 462, 475, 865, 1572
SduI GDGCHC 3 cut(s) 83, 688, 1066
SfaNI GCATC 4 cut(s) 631, 952, 1087, 1229
SfcI CTRYAG 1 cut(s) 24
SmiMI CAYNNNNRTG 2 cut(s) 389, 750
SmlI CTYRAG 2 cut(s) 814, 1262
SmoI CTYRAG 2 cut(s) 814, 1262
Sse9I AATT 5 cut(s) 18, 1204, 1226, 1574, 1588
SsiI CCGC 9 cut(s) 269, 288, 309, 600, 603, 1121, 1157, 1178, 1396
SspI AATATT 1 cut(s) 36
SspMI CTAG 4 cut(s) 698, 1164, 1239, 1494
SstI GAGCTC 2 cut(s) 688, 1066
StyI CCWWGG 1 cut(s) 55
TaaI ACNGT 1 cut(s) 160
TaiI ACGT 2 cut(s) 423, 584
TaqI TCGA 9 cut(s) 11, 91, 320, 471, 835, 999, 1005, 1126, 1332
TaqII GACCGA 1 cut(s) 608
TasI AATT 5 cut(s) 18, 1204, 1226, 1574, 1588
TauI GCSGC 3 cut(s) 605, 1124, 1399
TfiI GAWTC 8 cut(s) 262, 284, 305, 357, 899, 1314, 1409, 1444
Tru1I TTAA 8 cut(s) 366, 411, 659, 807, 815, 1505, 1527, 1557
Tru9I TTAA 8 cut(s) 366, 411, 659, 807, 815, 1505, 1527, 1557
TseFI GTSAC 3 cut(s) 421, 743, 824
TseI GCWGC 2 cut(s) 1140, 1304
Tsp45I GTSAC 3 cut(s) 421, 743, 824
TspDTI ATGAA 2 cut(s) 768, 1003
TspGWI ACGGA 1 cut(s) 1268
Vha464I CTTAAG 1 cut(s) 814
XapI RAATTY 3 cut(s) 18, 1204, 1226
XmiI GTMKAC 1 cut(s) 1071
XspI CTAG 4 cut(s) 698, 1164, 1239, 1494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.