Tetratricopeptide repeat
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G78120 AT1G78120 |
| fragaria_vesca | FvH4_5g37700 FvH4_5g37700 FvH4_5g37700 FvH4_5g37700 FvH4_5g37700 |
| malus_domestica | MD08G1181000.v1.1 MD15G1366600.v1.1 |
| prunus_persica | Prupe.1G514500_v2.0.a1 Prupe.1G514500_v2.0.a1 Prupe.1G514500_v2.0.a1 |
| pyrus_communis | pycom08g15470 pycom15g32870 |
| rosa_chinensis | RchiOBHm_Chr7g0239431 |
| rosa_laevigata | RLG00000000758 |
| rosa_roxburghii | Rroxscaffold_3G00220960 |
| rosa_rugosa | Rorug07G0327800 |
| rosa_samantha | Rh7AG481300 Rh7BG453800 Rh7CG499200 Rh7DG467300 |
| rosa_wichuraiana | Rw7G040320 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 586 |
| AccBSI | CCGCTC | 1 cut(s) | 1178 |
| AccI | GTMKAC | 1 cut(s) | 1071 |
| AccII | CGCG | 3 cut(s) | 271, 1157, 1442 |
| AciI | CCGC | 9 cut(s) | 269, 288, 309, 600, 603, 1121, 1157, 1178, 1396 |
| AclWI | GGATC | 4 cut(s) | 123, 467, 1127, 1265 |
| AcsI | RAATTY | 3 cut(s) | 18, 1204, 1226 |
| AcuI | CTGAAG | 3 cut(s) | 506, 932, 1500 |
| AcyI | GRCGYC | 1 cut(s) | 1109 |
| AfaI | GTAC | 1 cut(s) | 1382 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 931, 1054 |
| AflII | CTTAAG | 1 cut(s) | 814 |
| AgeI | ACCGGT | 2 cut(s) | 454, 1538 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 435 |
| AjiI | CACGTC | 1 cut(s) | 421 |
| Alw21I | GWGCWC | 2 cut(s) | 688, 1066 |
| Alw26I | GTCTC | 9 cut(s) | 56, 473, 620, 688, 767, 863, 1373, 1466, 1484 |
| AlwI | GGATC | 4 cut(s) | 123, 467, 1127, 1265 |
| Ama87I | CYCGRG | 1 cut(s) | 909 |
| ApeKI | GCWGC | 2 cut(s) | 1140, 1304 |
| ApoI | RAATTY | 3 cut(s) | 18, 1204, 1226 |
| AsiGI | ACCGGT | 2 cut(s) | 454, 1538 |
| AspLEI | GCGC | 1 cut(s) | 1401 |
| AsuHPI | GGTGA | 3 cut(s) | 257, 734, 1525 |
| AsuNHI | GCTAGC | 1 cut(s) | 1238 |
| AvaI | CYCGRG | 1 cut(s) | 909 |
| BanII | GRGCYC | 3 cut(s) | 83, 688, 1066 |
| BauI | CACGAG | 2 cut(s) | 536, 956 |
| BbsI | GAAGAC | 3 cut(s) | 132, 617, 1488 |
| Bbv12I | GWGCWC | 2 cut(s) | 688, 1066 |
| BbvI | GCAGC | 2 cut(s) | 1152, 1291 |
| BccI | CCATC | 3 cut(s) | 1048, 1384, 1462 |
| BceAI | ACGGC | 4 cut(s) | 72, 385, 392, 1122 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 300, 334, 1106, 1140 |
| BclI | TGATCA | 1 cut(s) | 609 |
| BcoDI | GTCTC | 9 cut(s) | 56, 473, 620, 688, 767, 863, 1373, 1466, 1484 |
| BfaI | CTAG | 4 cut(s) | 698, 1164, 1239, 1494 |
| BfmI | CTRYAG | 1 cut(s) | 24 |
| BfrI | CTTAAG | 1 cut(s) | 814 |
| BisI | GCNGC | 5 cut(s) | 603, 1122, 1141, 1305, 1397 |
| BlsI | GCNGC | 5 cut(s) | 604, 1123, 1142, 1306, 1398 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 435 |
| BmeT110I | CYCGRG | 1 cut(s) | 909 |
| BmgBI | CACGTC | 1 cut(s) | 421 |
| BmiI | GGNNCC | 1 cut(s) | 80 |
| BmsI | GCATC | 4 cut(s) | 631, 952, 1087, 1229 |
| BmtI | GCTAGC | 1 cut(s) | 1242 |
| BpiI | GAAGAC | 3 cut(s) | 132, 617, 1488 |
| BpmI | CTGGAG | 2 cut(s) | 97, 1355 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1065 |
| BpuEI | CTTGAG | 1 cut(s) | 1283 |
| Bsa29I | ATCGAT | 2 cut(s) | 320, 1005 |
| BsaBI | GATNNNNATC | 1 cut(s) | 261 |
| BsaHI | GRCGYC | 1 cut(s) | 1109 |
| BsaJI | CCNNGG | 3 cut(s) | 55, 908, 930 |
| BsaWI | WCCGGW | 6 cut(s) | 106, 454, 1383, 1521, 1538, 1551 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1053, 1083 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 931, 1054 |
| Bse118I | RCCGGY | 2 cut(s) | 454, 1538 |
| Bse8I | GATNNNNATC | 1 cut(s) | 261 |
| BseCI | ATCGAT | 2 cut(s) | 320, 1005 |
| BseDI | CCNNGG | 3 cut(s) | 55, 908, 930 |
| BseJI | GATNNNNATC | 1 cut(s) | 261 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 931, 1054 |
| BseMII | CTCAG | 5 cut(s) | 727, 1079, 1187, 1378, 1500 |
| BseRI | GAGGAG | 1 cut(s) | 897 |
| BseXI | GCAGC | 2 cut(s) | 1152, 1291 |
| Bsh1236I | CGCG | 3 cut(s) | 271, 1157, 1442 |
| Bsh1285I | CGRYCG | 1 cut(s) | 622 |
| BshTI | ACCGGT | 2 cut(s) | 454, 1538 |
| BshVI | ATCGAT | 2 cut(s) | 320, 1005 |
| BsiEI | CGRYCG | 1 cut(s) | 622 |
| BsiHKAI | GWGCWC | 2 cut(s) | 688, 1066 |
| BsiHKCI | CYCGRG | 1 cut(s) | 909 |
| BsiSI | CCGG | 6 cut(s) | 107, 455, 1384, 1522, 1539, 1552 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 931, 1054 |
| BsmAI | GTCTC | 9 cut(s) | 56, 473, 620, 688, 767, 863, 1373, 1466, 1484 |
| BsoBI | CYCGRG | 1 cut(s) | 909 |
| Bsp1286I | GDGCHC | 3 cut(s) | 83, 688, 1066 |
| Bsp143I | GATC | 7 cut(s) | 115, 472, 609, 839, 1132, 1270, 1324 |
| BspACI | CCGC | 9 cut(s) | 269, 288, 309, 600, 603, 1121, 1157, 1178, 1396 |
| BspCNI | CTCAG | 5 cut(s) | 726, 1078, 1188, 1377, 1501 |
| BspDI | ATCGAT | 2 cut(s) | 320, 1005 |
| BspFNI | CGCG | 3 cut(s) | 271, 1157, 1442 |
| BspLI | GGNNCC | 1 cut(s) | 80 |
| BspOI | GCTAGC | 1 cut(s) | 1242 |
| BspPI | GGATC | 4 cut(s) | 123, 467, 1127, 1265 |
| BspQI | GCTCTTC | 1 cut(s) | 1492 |
| BspTI | CTTAAG | 1 cut(s) | 814 |
| BsrBI | CCGCTC | 1 cut(s) | 1178 |
| BsrFI | RCCGGY | 2 cut(s) | 454, 1538 |
| BssAI | RCCGGY | 2 cut(s) | 454, 1538 |
| BssECI | CCNNGG | 3 cut(s) | 55, 908, 930 |
| BssMI | GATC | 7 cut(s) | 115, 472, 609, 839, 1132, 1270, 1324 |
| BssNI | GRCGYC | 1 cut(s) | 1109 |
| BssSI | CACGAG | 2 cut(s) | 536, 956 |
| BssT1I | CCWWGG | 1 cut(s) | 55 |
| Bst2BI | CACGAG | 2 cut(s) | 536, 956 |
| Bst4CI | ACNGT | 1 cut(s) | 160 |
| Bst6I | CTCTTC | 3 cut(s) | 498, 1482, 1492 |
| BstACI | GRCGYC | 1 cut(s) | 1109 |
| BstAFI | CTTAAG | 1 cut(s) | 814 |
| BstC8I | GCNNGC | 3 cut(s) | 405, 1119, 1240 |
| BstDEI | CTNAG | 5 cut(s) | 713, 1065, 1196, 1364, 1509 |
| BstFNI | CGCG | 3 cut(s) | 271, 1157, 1442 |
| BstHHI | GCGC | 1 cut(s) | 1401 |
| BstKTI | GATC | 7 cut(s) | 118, 475, 612, 842, 1135, 1273, 1327 |
| BstMAI | GTCTC | 9 cut(s) | 56, 473, 620, 688, 767, 863, 1373, 1466, 1484 |
| BstMBI | GATC | 7 cut(s) | 115, 472, 609, 839, 1132, 1270, 1324 |
| BstMCI | CGRYCG | 1 cut(s) | 622 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 560, 641, 949, 1106, 1169 |
| BstSFI | CTRYAG | 1 cut(s) | 24 |
| BstUI | CGCG | 3 cut(s) | 271, 1157, 1442 |
| BstV1I | GCAGC | 2 cut(s) | 1152, 1291 |
| BstV2I | GAAGAC | 3 cut(s) | 132, 617, 1488 |
| Bsu15I | ATCGAT | 2 cut(s) | 320, 1005 |
| BsuTUI | ATCGAT | 2 cut(s) | 320, 1005 |
| BtrI | CACGTC | 1 cut(s) | 421 |
| Cac8I | GCNNGC | 3 cut(s) | 405, 1119, 1240 |
| CfoI | GCGC | 1 cut(s) | 1401 |
| Cfr10I | RCCGGY | 2 cut(s) | 454, 1538 |
| ClaI | ATCGAT | 2 cut(s) | 320, 1005 |
| CseI | GACGC | 1 cut(s) | 1098 |
| Csp6I | GTAC | 1 cut(s) | 1381 |
| CspAI | ACCGGT | 2 cut(s) | 454, 1538 |
| CviQI | GTAC | 1 cut(s) | 1381 |
| DdeI | CTNAG | 5 cut(s) | 713, 1065, 1196, 1364, 1509 |
| DpnI | GATC | 7 cut(s) | 117, 474, 611, 841, 1134, 1272, 1326 |
| DpnII | GATC | 7 cut(s) | 115, 472, 609, 839, 1132, 1270, 1324 |
| DraI | TTTAAA | 1 cut(s) | 1558 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 586 |
| DriI | GACNNNNNGTC | 1 cut(s) | 435 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 586 |
| Eam1104I | CTCTTC | 3 cut(s) | 498, 1482, 1492 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 435 |
| EarI | CTCTTC | 3 cut(s) | 498, 1482, 1492 |
| EciI | GGCGGA | 2 cut(s) | 277, 589 |
| Ecl136II | GAGCTC | 2 cut(s) | 686, 1064 |
| Eco130I | CCWWGG | 1 cut(s) | 55 |
| Eco24I | GRGCYC | 3 cut(s) | 83, 688, 1066 |
| Eco32I | GATATC | 1 cut(s) | 885 |
| Eco53kI | GAGCTC | 2 cut(s) | 686, 1064 |
| Eco57I | CTGAAG | 3 cut(s) | 506, 932, 1500 |
| Eco88I | CYCGRG | 1 cut(s) | 909 |
| EcoICRI | GAGCTC | 2 cut(s) | 686, 1064 |
| EcoRV | GATATC | 1 cut(s) | 885 |
| EcoT14I | CCWWGG | 1 cut(s) | 55 |
| EcoT38I | GRGCYC | 3 cut(s) | 83, 688, 1066 |
| ErhI | CCWWGG | 1 cut(s) | 55 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 858, 890 |
| FauI | CCCGC | 1 cut(s) | 276 |
| FauNDI | CATATG | 1 cut(s) | 889 |
| FbaI | TGATCA | 1 cut(s) | 609 |
| FblI | GTMKAC | 1 cut(s) | 1071 |
| Fnu4HI | GCNGC | 5 cut(s) | 603, 1122, 1141, 1305, 1397 |
| FriOI | GRGCYC | 3 cut(s) | 83, 688, 1066 |
| Fsp4HI | GCNGC | 5 cut(s) | 603, 1122, 1141, 1305, 1397 |
| FspBI | CTAG | 4 cut(s) | 698, 1164, 1239, 1494 |
| GlaI | GCGC | 1 cut(s) | 1400 |
| GluI | GCNGC | 5 cut(s) | 603, 1122, 1141, 1305, 1397 |
| GsuI | CTGGAG | 2 cut(s) | 97, 1355 |
| HapII | CCGG | 6 cut(s) | 107, 455, 1384, 1522, 1539, 1552 |
| HgaI | GACGC | 1 cut(s) | 1098 |
| HhaI | GCGC | 1 cut(s) | 1401 |
| Hin1I | GRCGYC | 1 cut(s) | 1109 |
| Hin6I | GCGC | 1 cut(s) | 1399 |
| HinP1I | GCGC | 1 cut(s) | 1399 |
| HindIII | AAGCTT | 4 cut(s) | 633, 654, 735, 1319 |
| HpaII | CCGG | 6 cut(s) | 107, 455, 1384, 1522, 1539, 1552 |
| HphI | GGTGA | 3 cut(s) | 257, 734, 1525 |
| Hpy166II | GTNNAC | 4 cut(s) | 452, 1072, 1153, 1249 |
| Hpy188III | TCNNGA | 9 cut(s) | 70, 339, 391, 476, 629, 1051, 1311, 1333, 1448 |
| Hpy8I | GTNNAC | 4 cut(s) | 452, 1072, 1153, 1249 |
| Hpy99I | CGWCG | 2 cut(s) | 93, 583 |
| HpyAV | CCTTC | 4 cut(s) | 1080, 1226, 1250, 1381 |
| HpyCH4III | ACNGT | 1 cut(s) | 160 |
| HpyCH4IV | ACGT | 2 cut(s) | 420, 581 |
| HpyCH4V | TGCA | 7 cut(s) | 63, 860, 920, 943, 1100, 1190, 1353 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 560, 641, 949, 1106, 1169 |
| HpyF3I | CTNAG | 5 cut(s) | 713, 1065, 1196, 1364, 1509 |
| HpySE526I | ACGT | 2 cut(s) | 420, 581 |
| Hsp92I | GRCGYC | 1 cut(s) | 1109 |
| HspAI | GCGC | 1 cut(s) | 1399 |
| Ksp22I | TGATCA | 1 cut(s) | 609 |
| Kzo9I | GATC | 7 cut(s) | 115, 472, 609, 839, 1132, 1270, 1324 |
| LguI | GCTCTTC | 1 cut(s) | 1492 |
| LmnI | GCTCC | 3 cut(s) | 78, 893, 1061 |
| Lsp1109I | GCAGC | 2 cut(s) | 1152, 1291 |
| LweI | GCATC | 4 cut(s) | 631, 952, 1087, 1229 |
| MaeI | CTAG | 4 cut(s) | 698, 1164, 1239, 1494 |
| MaeII | ACGT | 2 cut(s) | 420, 581 |
| MaeIII | GTNAC | 6 cut(s) | 160, 421, 743, 824, 1102, 1295 |
| MalI | GATC | 7 cut(s) | 117, 474, 611, 841, 1134, 1272, 1326 |
| MbiI | CCGCTC | 1 cut(s) | 1178 |
| MboI | GATC | 7 cut(s) | 115, 472, 609, 839, 1132, 1270, 1324 |
| MhlI | GDGCHC | 3 cut(s) | 83, 688, 1066 |
| MluCI | AATT | 5 cut(s) | 18, 1204, 1226, 1574, 1588 |
| MlyI | GAGTC | 6 cut(s) | 58, 218, 462, 475, 865, 1572 |
| MmeI | TCCRAC | 3 cut(s) | 733, 1039, 1404 |
| MseI | TTAA | 8 cut(s) | 366, 411, 659, 807, 815, 1505, 1527, 1557 |
| MslI | CAYNNNNRTG | 2 cut(s) | 389, 750 |
| MspA1I | CMGCKG | 1 cut(s) | 563 |
| MspCI | CTTAAG | 1 cut(s) | 814 |
| MspI | CCGG | 6 cut(s) | 107, 455, 1384, 1522, 1539, 1552 |
| MvnI | CGCG | 3 cut(s) | 271, 1157, 1442 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 560, 641, 949, 1106, 1169 |
| NdeI | CATATG | 1 cut(s) | 889 |
| NdeII | GATC | 7 cut(s) | 115, 472, 609, 839, 1132, 1270, 1324 |
| NheI | GCTAGC | 1 cut(s) | 1238 |
| NlaIV | GGNNCC | 1 cut(s) | 80 |
| NmuCI | GTSAC | 3 cut(s) | 421, 743, 824 |
| PciSI | GCTCTTC | 1 cut(s) | 1492 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 543 |
| PfeI | GAWTC | 8 cut(s) | 262, 284, 305, 357, 899, 1314, 1409, 1444 |
| PinAI | ACCGGT | 2 cut(s) | 454, 1538 |
| PkrI | GCNGC | 5 cut(s) | 604, 1123, 1142, 1306, 1398 |
| PleI | GAGTC | 6 cut(s) | 57, 218, 462, 475, 865, 1571 |
| PpsI | GAGTC | 6 cut(s) | 57, 218, 462, 475, 865, 1571 |
| Psp124BI | GAGCTC | 2 cut(s) | 688, 1066 |
| PspN4I | GGNNCC | 1 cut(s) | 80 |
| PvuII | CAGCTG | 1 cut(s) | 563 |
| RsaI | GTAC | 1 cut(s) | 1382 |
| RsaNI | GTAC | 1 cut(s) | 1381 |
| RseI | CAYNNNNRTG | 2 cut(s) | 389, 750 |
| SacI | GAGCTC | 2 cut(s) | 688, 1066 |
| SapI | GCTCTTC | 1 cut(s) | 1492 |
| SaqAI | TTAA | 8 cut(s) | 366, 411, 659, 807, 815, 1505, 1527, 1557 |
| SatI | GCNGC | 5 cut(s) | 603, 1122, 1141, 1305, 1397 |
| Sau3AI | GATC | 7 cut(s) | 115, 472, 609, 839, 1132, 1270, 1324 |
| SchI | GAGTC | 6 cut(s) | 58, 218, 462, 475, 865, 1572 |
| SduI | GDGCHC | 3 cut(s) | 83, 688, 1066 |
| SfaNI | GCATC | 4 cut(s) | 631, 952, 1087, 1229 |
| SfcI | CTRYAG | 1 cut(s) | 24 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 389, 750 |
| SmlI | CTYRAG | 2 cut(s) | 814, 1262 |
| SmoI | CTYRAG | 2 cut(s) | 814, 1262 |
| Sse9I | AATT | 5 cut(s) | 18, 1204, 1226, 1574, 1588 |
| SsiI | CCGC | 9 cut(s) | 269, 288, 309, 600, 603, 1121, 1157, 1178, 1396 |
| SspI | AATATT | 1 cut(s) | 36 |
| SspMI | CTAG | 4 cut(s) | 698, 1164, 1239, 1494 |
| SstI | GAGCTC | 2 cut(s) | 688, 1066 |
| StyI | CCWWGG | 1 cut(s) | 55 |
| TaaI | ACNGT | 1 cut(s) | 160 |
| TaiI | ACGT | 2 cut(s) | 423, 584 |
| TaqI | TCGA | 9 cut(s) | 11, 91, 320, 471, 835, 999, 1005, 1126, 1332 |
| TaqII | GACCGA | 1 cut(s) | 608 |
| TasI | AATT | 5 cut(s) | 18, 1204, 1226, 1574, 1588 |
| TauI | GCSGC | 3 cut(s) | 605, 1124, 1399 |
| TfiI | GAWTC | 8 cut(s) | 262, 284, 305, 357, 899, 1314, 1409, 1444 |
| Tru1I | TTAA | 8 cut(s) | 366, 411, 659, 807, 815, 1505, 1527, 1557 |
| Tru9I | TTAA | 8 cut(s) | 366, 411, 659, 807, 815, 1505, 1527, 1557 |
| TseFI | GTSAC | 3 cut(s) | 421, 743, 824 |
| TseI | GCWGC | 2 cut(s) | 1140, 1304 |
| Tsp45I | GTSAC | 3 cut(s) | 421, 743, 824 |
| TspDTI | ATGAA | 2 cut(s) | 768, 1003 |
| TspGWI | ACGGA | 1 cut(s) | 1268 |
| Vha464I | CTTAAG | 1 cut(s) | 814 |
| XapI | RAATTY | 3 cut(s) | 18, 1204, 1226 |
| XmiI | GTMKAC | 1 cut(s) | 1071 |
| XspI | CTAG | 4 cut(s) | 698, 1164, 1239, 1494 |