Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008561

Physical Location & Seq

Genomic Coordinates Forward (+)

64898688 .. 64902208

Gene Structure 3521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21457

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2079 bp

ATGGCAAAGATGGCCAATTATAAGGTGGAGAATAATGACTTGGGTTGTGGTTTTCTATCTGGGATTTTCCAGTGCTCAAGAAAATCTCTGGTCCATTCATTACCCACCAATATTAGCCAAAATCATTTGAAGGCACCAGACAATGATGATTCCAAGAAGCCTAAGGAGTCCAAAGAAGTTTCTTTCGCCATCCCCACCAATTGGGCTAAGCCTTCTCCGAATCAAGAAGTGAAGCACACCAGAAAGCCGAGCTTGGATAGGCCTTCTTCCACAGGTACTCACCAGAAGGTACTTCAAGCAAGAAGAAGCTCAGATGCTGGAAGAAGCTCAACATCTTCCAACGGTTCTAGACAAATCAAGGTGTTTGTGGCGCCGGAGGAGAAAAAGATTCAGAGGGCATCTACTACTAGCTCGGCTGAACTAAGTAGGAAGATCAATGATCACCATCAAGCCAATGATGGCAAAGCTTTAGTCCGAGCCAGTTCAGGTAGTGTCATTCATTCAGGACAGTTGGGGAACTTGAGGCTGCAGCCTGGAATTTCGAGTCTGCTAACAAGTAATAGTACTCCTAATTCCACACCAAAATGTAAAGCTGCTGTGATGGGAAACATTGTGAAGAAGAGTAGTGATAATCTTGGAGTTCTAAGTTCTGCGAATAAATTGGACCCTGAGGCTTTGAAGTCGATGGGAAATGAAGCATACAAGGAGAACAGATTCGAAGAGGCCTTGGCTTTATATGATCGAGCAATTGCTATGGATTCAAATAAGGCAGCTTATCACAGCAACAAAAGTGCTGCTTTGATTGGTTTAGGCTGCCTTATCGAGGCAGTTTTTGAATGCAAAGAAGCCATCCAGATTGAGCCTTCATATCACAAAGCTCATTATCGGCTGGCGACGGCATATCTCAGACTAGGAGAAACAGAGAAAGCATTGGATCATTACAAACTTTCGGGTCCATATGCGTATTCGAAAGACATAGATCAATGCCAGTCTCTTCAGAAATGCCTCAGCAGATGCATCGAAGCTCAGAAATTACAGGAGTGGAATGTTTTGTTAAATGAGACCCAATTGGCAATGTCTTCAGGTGCCAATTCAGCTCCACAGGTCTTTGCTCTACAAGCTGAGGCCTTGTTGAATCTTCACAGACATGAAGAGGCATATTCTACCTACCAGAACAGACCAAATTTCAGCATTATTTTGTGCACTAAATTCTTTGGCATGGCAATCAGTGCTTATCTGTTAATGATTGGTGCACAAGTTTACTTGGCTGCTGGCAGATTTGAAGATGCAATGGCAGCCGCTCAACAGGCAGCACGACTCAATCCGGGTCACAAGGAAATTGGCACGGTGGTGAAGAGGGCTAGAACTGTTGCATCAGCCCGATCGAGTGGTAACCTTCTCTTCAAGGCATCAAAATTCACAGAAGCTAGTGTAGTGTATAGCCAAGGATTAGAGCAGGATCCATACAACTCGGTTTTGCTATGCAATCGAGCAGCTTGTCGTTCTAAGCTAGGCCAATATGAAAAGGCTGTTGAAGATTGCACTGCAGCTCTTAATCTGCAGCCTTGTTATAGCAAGGCTAGGCTGCGACGGGCTGATTGCAATGCCAAGTTAGAGAGGTGGGGAGCTTCAATTAAAGATTATGAGGTGCTGATAAGAGAAACTCCAGGAGATGAAGAAGTTGGGAAGGCTTTGTTTGAAGCCCAAATCCAGCTAAAAAGACAACATGGTGAAGATATTGGGGACATGAAATTTGGATCAAATTTTATTTCCATTGCCAACAATGAGCGTTTCAGACACTATGTGACCTCTCCAGGGATGTCAGTGGTGCTCTTCTGTAGCAAAACTAGACAGAAGCAAGTGTCGCAATCCCTGGAACAAGTCTGCAAAAGATTCCCTTCTGTTAACTTCCTCAAGGTGGCGGTAGAAGACCACCCTTACTTGGCAAAACTGGAGGACGTGAGCACCATCCCAGCCTTCAAGATATACAAAAATGGATCAAGGGTCAAAGAAATTCCAGGCAACCACCATGAATTATTAGAAAGCTCAGTCAAATTATACAGCGGTTCAGGATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0010051 GO:0010305 GO:0014070 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043401 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_11 TPR_16 TPR_2 TPR_7 TPR_8 Thioredoxin

Protein Analysis

692

Amino Acids

76.24

Weight (kDa)

9.22

Isoelectric Point (pI)

45.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_17	PF13431	480 - 511	9.5e-06	Tetratricopeptide repeat
TPR_1	PF00515	493 - 522	2.9e-06	Tetratricopeptide repeat
Thioredoxin	PF00085	594 - 681	4.6e-06	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008561)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78120 AT1G78120
fragaria_vesca	FvH4_5g37700 FvH4_5g37700 FvH4_5g37700 FvH4_5g37700 FvH4_5g37700
malus_domestica	MD08G1181000.v1.1 MD15G1366600.v1.1
prunus_persica	Prupe.1G514500_v2.0.a1 Prupe.1G514500_v2.0.a1 Prupe.1G514500_v2.0.a1
pyrus_communis	pycom08g15470 pycom15g32870
rosa_chinensis	RchiOBHm_Chr7g0239431
rosa_laevigata	RLG00000000758
rosa_roxburghii	Rroxscaffold_3G00220960
rosa_rugosa	Rorug07G0327800
rosa_samantha	Rh7AG481300 Rh7BG453800 Rh7CG499200 Rh7DG467300
rosa_wichuraiana	Rw7G040320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	21
AccB1I	GGYRCC	3 cut(s)	133, 370, 1085
AccB7I	CCANNNNNTGG	1 cut(s)	201
AccBSI	CCGCTC	1 cut(s)	1301
AciI	CCGC	3 cut(s)	1299, 1922, 2064
AclWI	GGATC	5 cut(s)	942, 1454, 1467, 1765, 2005
AcoI	YGGCCR	1 cut(s)	12
AcsI	RAATTY	7 cut(s)	537, 1183, 1208, 1415, 1751, 1762, 2013
AcuI	CTGAAG	2 cut(s)	980, 1065
AcyI	GRCGYC	1 cut(s)	371
AdeI	CACNNNGTG	1 cut(s)	1804
AfaI	GTAC	3 cut(s)	277, 291, 565
AfiI	CCNNNNNNNGG	5 cut(s)	201, 823, 1815, 1918, 1942
AjiI	CACGTC	1 cut(s)	1960
AjnI	CCWGG	5 cut(s)	532, 1666, 1813, 1872, 2017
AjuI	GAANNNNNNNTTGG	2 cut(s)	23, 55
AleI	CACNNNNGTG	1 cut(s)	1349
Alw21I	GWGCWC	5 cut(s)	77, 1205, 1255, 1833, 1967
Alw26I	GTCTC	2 cut(s)	996, 1055
Alw44I	GTGCAC	2 cut(s)	1201, 1251
AlwI	GGATC	5 cut(s)	942, 1454, 1467, 1765, 2005
AlwNI	CAGNNNCTG	1 cut(s)	317
AoxI	GGCC	5 cut(s)	12, 260, 723, 1125, 1513
ApaLI	GTGCAC	2 cut(s)	1201, 1251
ApoI	RAATTY	7 cut(s)	537, 1183, 1208, 1415, 1751, 1762, 2013
ArsI	GACNNNNNNTTYG	4 cut(s)	456, 488, 1736, 1768
Asp700I	GAANNNNTTC	1 cut(s)	713
AspLEI	GCGC	1 cut(s)	373
AspS9I	GGNCC	3 cut(s)	91, 664, 953
AsuC2I	CCSGG	1 cut(s)	1326
AsuHPI	GGTGA	4 cut(s)	272, 434, 1363, 1742
AsuII	TTCGAA	2 cut(s)	717, 968
AvaII	GGWCC	3 cut(s)	91, 664, 953
AxyI	CCTNAGG	2 cut(s)	162, 669
BaeGI	GKGCMC	2 cut(s)	1205, 1255
BalI	TGGCCA	1 cut(s)	14
BamHI	GGATCC	1 cut(s)	1459
BanI	GGYRCC	3 cut(s)	133, 370, 1085
BbsI	GAAGAC	2 cut(s)	1071, 1935
Bbv12I	GWGCWC	5 cut(s)	77, 1205, 1255, 1833, 1967
BbvCI	CCTCAGC	2 cut(s)	1007, 1122
BccI	CCATC	8 cut(s)	4, 197, 452, 453, 595, 679, 857, 1976
BceAI	ACGGC	1 cut(s)	912
BcgI	CGANNNNNNTGC	2 cut(s)	1000, 1034
BciT130I	CCWGG	5 cut(s)	534, 1668, 1815, 1874, 2019
BclI	TGATCA	1 cut(s)	439
BcnI	CCSGG	1 cut(s)	1326
BcoDI	GTCTC	2 cut(s)	996, 1055
BfaI	CTAG	8 cut(s)	348, 408, 911, 1362, 1428, 1511, 1581, 1848
BfmI	CTRYAG	4 cut(s)	527, 1545, 1559, 1837
BfoI	RGCGCY	1 cut(s)	374
BlpI	GCTNAGC	1 cut(s)	207
BmcAI	AGTACT	1 cut(s)	565
Bme1390I	CCNGG	6 cut(s)	534, 1326, 1668, 1815, 1874, 2019
Bme18I	GGWCC	3 cut(s)	91, 664, 953
BmgBI	CACGTC	1 cut(s)	1960
BmgT120I	GGNCC	3 cut(s)	91, 664, 953
BmiI	GGNNCC	6 cut(s)	135, 372, 666, 954, 1087, 1461
BmrFI	CCNGG	6 cut(s)	534, 1326, 1668, 1815, 1874, 2019
BmsI	GCATC	7 cut(s)	304, 407, 1004, 1026, 1276, 1382, 1418
BpiI	GAAGAC	2 cut(s)	1071, 1935
BpmI	CTGGAG	3 cut(s)	1650, 1797, 1973
Bpu10I	CCTNAGC	2 cut(s)	1007, 1122
Bpu1102I	GCTNAGC	1 cut(s)	207
Bpu14I	TTCGAA	2 cut(s)	717, 968
BpuEI	CTTGAG	3 cut(s)	61, 541, 1898
BpuMI	CCSGG	1 cut(s)	1326
BsaBI	GATNNNNATC	1 cut(s)	444
BsaHI	GRCGYC	1 cut(s)	371
BsaI	GGTCTC	1 cut(s)	1055
BsaJI	CCNNGG	4 cut(s)	726, 1444, 1814, 1872
Bsc4I	CCNNNNNNNGG	5 cut(s)	201, 823, 1815, 1918, 1942
Bse1I	ACTGG	4 cut(s)	70, 480, 988, 1956
Bse21I	CCTNAGG	2 cut(s)	162, 669
Bse3DI	GCAATG	4 cut(s)	1080, 1296, 1609, 1773
Bse8I	GATNNNNATC	1 cut(s)	444
BseBI	CCWGG	5 cut(s)	534, 1668, 1815, 1874, 2019
BseDI	CCNNGG	4 cut(s)	726, 1444, 1814, 1872
BseGI	GGATG	4 cut(s)	189, 849, 1824, 1968
BseJI	GATNNNNATC	1 cut(s)	444
BseLI	CCNNNNNNNGG	5 cut(s)	201, 823, 1815, 1918, 1942
BseMI	GCAATG	4 cut(s)	1080, 1296, 1609, 1773
BseMII	CTCAG	7 cut(s)	324, 660, 919, 1021, 1040, 1113, 2061
BseNI	ACTGG	4 cut(s)	70, 480, 988, 1956
BseRI	GAGGAG	1 cut(s)	392
BseSI	GKGCMC	2 cut(s)	1205, 1255
BseYI	CCCAGC	1 cut(s)	1972
Bsh1285I	CGRYCG	1 cut(s)	1385
BshFI	GGCC	5 cut(s)	14, 262, 725, 1127, 1515
BshNI	GGYRCC	3 cut(s)	133, 370, 1085
BsiEI	CGRYCG	1 cut(s)	1385
BsiHKAI	GWGCWC	5 cut(s)	77, 1205, 1255, 1833, 1967
BsiSI	CCGG	2 cut(s)	374, 1325
BslFI	GGGAC	1 cut(s)	1757
BslI	CCNNNNNNNGG	5 cut(s)	201, 823, 1815, 1918, 1942
BsmAI	GTCTC	2 cut(s)	996, 1055
BsmFI	GGGAC	1 cut(s)	1757
BsmI	GAATGC	1 cut(s)	842
BsnI	GGCC	5 cut(s)	14, 262, 725, 1127, 1515
Bso31I	GGTCTC	1 cut(s)	1055
Bsp119I	TTCGAA	2 cut(s)	717, 968
Bsp1286I	GDGCHC	5 cut(s)	77, 1205, 1255, 1833, 1967
Bsp143I	GATC	9 cut(s)	432, 439, 739, 934, 979, 1382, 1459, 1757, 1997
Bsp1720I	GCTNAGC	1 cut(s)	207
BspACI	CCGC	3 cut(s)	1299, 1922, 2064
BspANI	GGCC	5 cut(s)	14, 262, 725, 1127, 1515
BspCNI	CTCAG	7 cut(s)	323, 661, 918, 1020, 1039, 1114, 2060
BspLI	GGNNCC	6 cut(s)	135, 372, 666, 954, 1087, 1461
BspMAI	CTGCAG	3 cut(s)	531, 1549, 1563
BspPI	GGATC	5 cut(s)	942, 1454, 1467, 1765, 2005
BspQI	GCTCTTC	1 cut(s)	1838
BspT104I	TTCGAA	2 cut(s)	717, 968
BspT107I	GGYRCC	3 cut(s)	133, 370, 1085
BspTNI	GGTCTC	1 cut(s)	1055
BsrBI	CCGCTC	1 cut(s)	1301
BsrDI	GCAATG	4 cut(s)	1080, 1296, 1609, 1773
BsrI	ACTGG	4 cut(s)	70, 480, 988, 1956
BssECI	CCNNGG	4 cut(s)	726, 1444, 1814, 1872
BssMI	GATC	9 cut(s)	432, 439, 739, 934, 979, 1382, 1459, 1757, 1997
BssNI	GRCGYC	1 cut(s)	371
BssT1I	CCWWGG	2 cut(s)	726, 1444
Bst2UI	CCWGG	5 cut(s)	534, 1668, 1815, 1874, 2019
Bst4CI	ACNGT	4 cut(s)	344, 510, 1348, 1369
Bst6I	CTCTTC	7 cut(s)	614, 714, 999, 1146, 1349, 1406, 1838
BstACI	GRCGYC	1 cut(s)	371
BstAPI	GCANNNNNTGC	1 cut(s)	1229
BstBI	TTCGAA	2 cut(s)	717, 968
BstC8I	GCNNGC	2 cut(s)	891, 1273
BstEII	GGTNACC	1 cut(s)	1391
BstENI	CCTNNNNNAGG	1 cut(s)	821
BstF5I	GGATG	4 cut(s)	189, 849, 1824, 1968
BstH2I	RGCGCY	1 cut(s)	374
BstHHI	GCGC	1 cut(s)	373
BstKTI	GATC	9 cut(s)	435, 442, 742, 937, 982, 1385, 1462, 1760, 2000
BstMAI	GTCTC	2 cut(s)	996, 1055
BstMBI	GATC	9 cut(s)	432, 439, 739, 934, 979, 1382, 1459, 1757, 1997
BstMCI	CGRYCG	1 cut(s)	1385
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 1094, 1118, 1229, 1295, 1307, 1864
BstNI	CCWGG	5 cut(s)	534, 1668, 1815, 1874, 2019
BstPI	GGTNACC	1 cut(s)	1391
BstSCI	CCNGG	6 cut(s)	532, 1324, 1666, 1813, 1872, 2017
BstSFI	CTRYAG	4 cut(s)	527, 1545, 1559, 1837
BstSLI	GKGCMC	2 cut(s)	1205, 1255
BstV2I	GAAGAC	2 cut(s)	1071, 1935
BstX2I	RGATCY	1 cut(s)	1459
BstYI	RGATCY	1 cut(s)	1459
Bsu36I	CCTNAGG	2 cut(s)	162, 669
BsuRI	GGCC	5 cut(s)	14, 262, 725, 1127, 1515
BtrI	CACGTC	1 cut(s)	1960
BtsCI	GGATG	4 cut(s)	189, 849, 1824, 1968
BtsI	GCAGTG	1 cut(s)	1542
BtsIMutI	CAGTG	4 cut(s)	77, 1234, 1542, 1830
Cac8I	GCNNGC	2 cut(s)	891, 1273
CaiI	CAGNNNCTG	1 cut(s)	317
CfoI	GCGC	1 cut(s)	373
Cfr13I	GGNCC	3 cut(s)	91, 664, 953
Csp6I	GTAC	3 cut(s)	276, 290, 564
CviAII	CATG	5 cut(s)	1148, 1219, 1727, 1747, 2030
CviQI	GTAC	3 cut(s)	276, 290, 564
DinI	GGCGCC	1 cut(s)	372
DpnI	GATC	9 cut(s)	434, 441, 741, 936, 981, 1384, 1461, 1759, 1999
DpnII	GATC	9 cut(s)	432, 439, 739, 934, 979, 1382, 1459, 1757, 1997
DraIII	CACNNNGTG	1 cut(s)	1804
EaeI	YGGCCR	1 cut(s)	12
Eam1104I	CTCTTC	7 cut(s)	614, 714, 999, 1146, 1349, 1406, 1838
EarI	CTCTTC	7 cut(s)	614, 714, 999, 1146, 1349, 1406, 1838
Eco130I	CCWWGG	2 cut(s)	726, 1444
Eco147I	AGGCCT	3 cut(s)	262, 725, 1127
Eco31I	GGTCTC	1 cut(s)	1055
Eco47I	GGWCC	3 cut(s)	91, 664, 953
Eco57I	CTGAAG	2 cut(s)	980, 1065
Eco81I	CCTNAGG	2 cut(s)	162, 669
Eco91I	GGTNACC	1 cut(s)	1391
EcoNI	CCTNNNNNAGG	1 cut(s)	821
EcoO65I	GGTNACC	1 cut(s)	1391
EcoRII	CCWGG	5 cut(s)	532, 1666, 1813, 1872, 2017
EcoT14I	CCWWGG	2 cut(s)	726, 1444
EcoT22I	ATGCAT	1 cut(s)	1019
EgeI	GGCGCC	1 cut(s)	372
EheI	GGCGCC	1 cut(s)	372
ErhI	CCWWGG	2 cut(s)	726, 1444
FaeI	CATG	5 cut(s)	1151, 1222, 1730, 1750, 2033
FalI	AAGNNNNNCTT	6 cut(s)	236, 268, 781, 813, 1882, 1914
FaqI	GGGAC	1 cut(s)	1757
FatI	CATG	5 cut(s)	1147, 1218, 1726, 1746, 2029
FauNDI	CATATG	1 cut(s)	958
FbaI	TGATCA	1 cut(s)	439
FokI	GGATG	4 cut(s)	176, 836, 1831, 1955
FspBI	CTAG	8 cut(s)	348, 408, 911, 1362, 1428, 1511, 1581, 1848
GlaI	GCGC	1 cut(s)	372
GsaI	CCCAGC	1 cut(s)	1976
GsuI	CTGGAG	3 cut(s)	1650, 1797, 1973
HaeII	RGCGCY	1 cut(s)	374
HaeIII	GGCC	5 cut(s)	14, 262, 725, 1127, 1515
HapII	CCGG	2 cut(s)	374, 1325
HhaI	GCGC	1 cut(s)	373
Hin1I	GRCGYC	1 cut(s)	371
Hin1II	CATG	5 cut(s)	1151, 1222, 1730, 1750, 2033
Hin6I	GCGC	1 cut(s)	371
HinP1I	GCGC	1 cut(s)	371
HincII	GTYRAC	1 cut(s)	1906
HindII	GTYRAC	1 cut(s)	1906
HindIII	AAGCTT	1 cut(s)	465
HpaI	GTTAAC	1 cut(s)	1906
HpaII	CCGG	2 cut(s)	374, 1325
HphI	GGTGA	4 cut(s)	272, 434, 1363, 1742
Hpy166II	GTNNAC	4 cut(s)	1203, 1253, 1261, 1906
Hpy188I	TCNGA	8 cut(s)	219, 313, 393, 476, 908, 999, 1029, 1796
Hpy188III	TCNNGA	7 cut(s)	78, 224, 348, 504, 853, 1981, 2070
Hpy8I	GTNNAC	4 cut(s)	1203, 1253, 1261, 1906
Hpy99I	CGWCG	2 cut(s)	898, 1593
HpyAV	CCTTC	9 cut(s)	124, 222, 273, 280, 873, 1406, 1681, 1908, 1987
HpyCH4III	ACNGT	4 cut(s)	344, 510, 1348, 1369
HpyCH4IV	ACGT	1 cut(s)	1959
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 1094, 1118, 1229, 1295, 1307, 1864
HpySE526I	ACGT	1 cut(s)	1959
Hsp92I	GRCGYC	1 cut(s)	371
Hsp92II	CATG	5 cut(s)	1151, 1222, 1730, 1750, 2033
HspAI	GCGC	1 cut(s)	371
KasI	GGCGCC	1 cut(s)	370
Ksp22I	TGATCA	1 cut(s)	439
KspAI	GTTAAC	1 cut(s)	1906
Kzo9I	GATC	9 cut(s)	432, 439, 739, 934, 979, 1382, 1459, 1757, 1997
LguI	GCTCTTC	1 cut(s)	1838
LmnI	GCTCC	2 cut(s)	1102, 1625
LweI	GCATC	7 cut(s)	304, 407, 1004, 1026, 1276, 1382, 1418
MaeI	CTAG	8 cut(s)	348, 408, 911, 1362, 1428, 1511, 1581, 1848
MaeII	ACGT	1 cut(s)	1959
MaeIII	GTNAC	3 cut(s)	1328, 1391, 1804
MalI	GATC	9 cut(s)	434, 441, 741, 936, 981, 1384, 1461, 1759, 1999
MbiI	CCGCTC	1 cut(s)	1301
MboI	GATC	9 cut(s)	432, 439, 739, 934, 979, 1382, 1459, 1757, 1997
MfeI	CAATTG	3 cut(s)	199, 747, 1067
MflI	RGATCY	1 cut(s)	1459
MhlI	GDGCHC	5 cut(s)	77, 1205, 1255, 1833, 1967
MlsI	TGGCCA	1 cut(s)	14
MluNI	TGGCCA	1 cut(s)	14
Mly113I	GGCGCC	1 cut(s)	371
MlyI	GAGTC	3 cut(s)	176, 553, 1311
MmeI	TCCRAC	1 cut(s)	363
Mox20I	TGGCCA	1 cut(s)	14
Mph1103I	ATGCAT	1 cut(s)	1019
MroXI	GAANNNNTTC	1 cut(s)	713
MscI	TGGCCA	1 cut(s)	14
MseI	TTAA	5 cut(s)	1055, 1241, 1554, 1635, 1905
MslI	CAYNNNNRTG	3 cut(s)	583, 1146, 1349
Msp20I	TGGCCA	1 cut(s)	14
MspA1I	CMGCKG	1 cut(s)	2064
MspI	CCGG	2 cut(s)	374, 1325
MspR9I	CCNGG	6 cut(s)	534, 1326, 1668, 1815, 1874, 2019
MunI	CAATTG	3 cut(s)	199, 747, 1067
Mva1269I	GAATGC	1 cut(s)	842
MvaI	CCWGG	5 cut(s)	534, 1668, 1815, 1874, 2019
MwoI	GCNNNNNNNGC	7 cut(s)	11, 1094, 1118, 1229, 1295, 1307, 1864
NarI	GGCGCC	1 cut(s)	371
NciI	CCSGG	1 cut(s)	1326
NdeI	CATATG	1 cut(s)	958
NdeII	GATC	9 cut(s)	432, 439, 739, 934, 979, 1382, 1459, 1757, 1997
NlaIII	CATG	5 cut(s)	1151, 1222, 1730, 1750, 2033
NlaIV	GGNNCC	6 cut(s)	135, 372, 666, 954, 1087, 1461
NmeAIII	GCCGAG	2 cut(s)	273, 392
NmuCI	GTSAC	2 cut(s)	1328, 1804
NsiI	ATGCAT	1 cut(s)	1019
NspV	TTCGAA	2 cut(s)	717, 968
OliI	CACNNNNGTG	1 cut(s)	1349
PceI	AGGCCT	3 cut(s)	262, 725, 1127
PciSI	GCTCTTC	1 cut(s)	1838
PctI	GAATGC	1 cut(s)	842
PdmI	GAANNNNTTC	1 cut(s)	713
PfeI	GAWTC	7 cut(s)	149, 220, 388, 714, 758, 1135, 1893
PflMI	CCANNNNNTGG	1 cut(s)	201
PfoI	TCCNGGA	1 cut(s)	1666
Ple19I	CGATCG	1 cut(s)	1385
PleI	GAGTC	3 cut(s)	175, 552, 1311
PluTI	GGCGCC	1 cut(s)	374
PpsI	GAGTC	3 cut(s)	175, 552, 1311
PsiI	TTATAA	1 cut(s)	21
Psp6I	CCWGG	5 cut(s)	532, 1666, 1813, 1872, 2017
PspEI	GGTNACC	1 cut(s)	1391
PspFI	CCCAGC	1 cut(s)	1972
PspGI	CCWGG	5 cut(s)	532, 1666, 1813, 1872, 2017
PspN4I	GGNNCC	6 cut(s)	135, 372, 666, 954, 1087, 1461
PspPI	GGNCC	3 cut(s)	91, 664, 953
PstI	CTGCAG	3 cut(s)	531, 1549, 1563
PstNI	CAGNNNCTG	1 cut(s)	317
PsuI	RGATCY	1 cut(s)	1459
PvuI	CGATCG	1 cut(s)	1385
RsaI	GTAC	3 cut(s)	277, 291, 565
RsaNI	GTAC	3 cut(s)	276, 290, 564
RseI	CAYNNNNRTG	3 cut(s)	583, 1146, 1349
SapI	GCTCTTC	1 cut(s)	1838
SaqAI	TTAA	5 cut(s)	1055, 1241, 1554, 1635, 1905
Sau3AI	GATC	9 cut(s)	432, 439, 739, 934, 979, 1382, 1459, 1757, 1997
Sau96I	GGNCC	3 cut(s)	91, 664, 953
ScaI	AGTACT	1 cut(s)	565
SchI	GAGTC	3 cut(s)	176, 553, 1311
ScrFI	CCNGG	6 cut(s)	534, 1326, 1668, 1815, 1874, 2019
SduI	GDGCHC	5 cut(s)	77, 1205, 1255, 1833, 1967
SfaNI	GCATC	7 cut(s)	304, 407, 1004, 1026, 1276, 1382, 1418
SfcI	CTRYAG	4 cut(s)	527, 1545, 1559, 1837
SfoI	GGCGCC	1 cut(s)	372
SfuI	TTCGAA	2 cut(s)	717, 968
SinI	GGWCC	3 cut(s)	91, 664, 953
SmiMI	CAYNNNNRTG	3 cut(s)	583, 1146, 1349
SmlI	CTYRAG	3 cut(s)	76, 520, 1913
SmoI	CTYRAG	3 cut(s)	76, 520, 1913
SseBI	AGGCCT	3 cut(s)	262, 725, 1127
SsiI	CCGC	3 cut(s)	1299, 1922, 2064
SspDI	GGCGCC	1 cut(s)	370
SspI	AATATT	1 cut(s)	112
SspMI	CTAG	8 cut(s)	348, 408, 911, 1362, 1428, 1511, 1581, 1848
StuI	AGGCCT	3 cut(s)	262, 725, 1127
StyD4I	CCNGG	6 cut(s)	532, 1324, 1666, 1813, 1872, 2017
StyI	CCWWGG	2 cut(s)	726, 1444
TaaI	ACNGT	4 cut(s)	344, 510, 1348, 1369
TaiI	ACGT	1 cut(s)	1962
TaqI	TCGA	9 cut(s)	542, 683, 717, 742, 822, 968, 1020, 1385, 1489
TatI	WGTACW	1 cut(s)	563
TauI	GCSGC	1 cut(s)	1301
TfiI	GAWTC	7 cut(s)	149, 220, 388, 714, 758, 1135, 1893
Tru1I	TTAA	5 cut(s)	1055, 1241, 1554, 1635, 1905
Tru9I	TTAA	5 cut(s)	1055, 1241, 1554, 1635, 1905
TscAI	CASTG	4 cut(s)	77, 1234, 1549, 1830
TseFI	GTSAC	2 cut(s)	1328, 1804
Tsp45I	GTSAC	2 cut(s)	1328, 1804
TspDTI	ATGAA	9 cut(s)	87, 488, 708, 855, 1164, 1536, 1689, 1763, 2046
TspRI	CASTG	4 cut(s)	77, 1234, 1549, 1830
Van91I	CCANNNNNTGG	1 cut(s)	201
VneI	GTGCAC	2 cut(s)	1201, 1251
VpaK11BI	GGWCC	3 cut(s)	91, 664, 953
XagI	CCTNNNNNAGG	1 cut(s)	821
XapI	RAATTY	7 cut(s)	537, 1183, 1208, 1415, 1751, 1762, 2013
XbaI	TCTAGA	1 cut(s)	347
XcmI	CCANNNNNNNNNTGG	1 cut(s)	22
XmnI	GAANNNNTTC	1 cut(s)	713
XspI	CTAG	8 cut(s)	348, 408, 911, 1362, 1428, 1511, 1581, 1848
ZrmI	AGTACT	1 cut(s)	565
Zsp2I	ATGCAT	1 cut(s)	1019

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.