Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0021481

Physical Location & Seq

Genomic Coordinates Reverse (-)

66258263 .. 66262481

Gene Structure 4219 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21539

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGTCATATGATTCAATTGCACATCTATTACTGTCTGCTGAAGTGAAACAGGCTATTGAGTGGATTATGTGCAACCTTGGTGGTCCCTATGCAGCTGATTCAGTTGCTGCTGCACTTGCGGTTGGTGCTGACTCTGATGTGTTACGAGAAAACACAGAAGCTGTTGTTGCAGCCTGTGATGCTGCCCAGGAAAGATGGGCAAAACTACTTGGGATGACAAATATTAAGGCAGTTCTTGACCAAGAAGCATGGGTGGATGTAGATGTTCCTGATGGATTTCTGGTTATTGTCACTTCATTATTTTGTTCTGAAGCATTGGGAACCGAGAACCTGGATACTGTTCATGGTAGTACCGAAACAAGCTACACTGAGGTGGCCACAAGCAACAATAGTTCACATGTGGTGGATACAGGGCCATCATTTACAGAACAGCATATTAACCGAACTGATTCTACTGAATTATCTACGGATATGACCGGAAAGGATAAGTCTACATATGCTCCTGGAGCTGAAAAGAATAAGGCTGATGTTACAAATTCTGTGGCTCAGAACAGCCACAGCAATATGAAGGAGAGAGGAAAGTCAACTTCCAAAACCATTTTGTGCAAAGGTGTTGGTTTTCACATGGTAAACTGGTTAGTTTCTTTGTTTCACTCTTCTTTTTTTTTTCCTTTCTTATATCTACTTGTCTCATTTTCCTGCTATATGTCTGCCAATACTCTATTTTTCGTAATGCTAATGCTGTATTTGGAGTTTTGTTCTGTTGTTGGCCTGATATTGATGAAGATGTTGTCAGAGTACATTGATATGTCCAACTTTGTTTCCTCAGAAGTTATTCTCAGAGGTTGTTCATTGTTGTTGTTCATTGATATGTCAGCTTGTTCCTGGTTGCAGGTATCTGGCCTGAAGTTGATAACTTCTAAACACTTGGCCTTGGCAAGTCAAGTCATCAGTTTCGCATATGCTATTATTCGTGGCAAATTCATTTTTCTGAAAGTACCTGAGACAAGAAAGGCAATGTTGCTATCTGAAATTGATCAACTAGCTCAGGATTATAAGGTTCATAGAGATGAAATTTATACAAAGCTGGTTCAGATCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0000938 GO:0001894 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005794 GO:0005802 GO:0006810 GO:0006892 GO:0006896 GO:0006996 GO:0007010 GO:0007034 GO:0007041 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016482 GO:0019905 GO:0031090 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0031984 GO:0032501 GO:0032588 GO:0032991 GO:0040008 GO:0042147 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045103 GO:0045104 GO:0046907 GO:0048193 GO:0048471 GO:0048871 GO:0048872 GO:0048873 GO:0050789 GO:0050879 GO:0050881 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060052 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071840 GO:0097708 GO:0098588 GO:0098791 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps54

Protein Analysis

367

Amino Acids

40.47

Weight (kDa)

5.12

Isoelectric Point (pI)

36.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Vps54	PF07928	257 - 367	1.1e-15	Vps54-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0021481)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0240301
rosa_multiflora	Rmu_sc0007766.1_g000001
rosa_roxburghii	Rroxscaffold_3G00220230 Rroxscaffold_6G00426720
rosa_samantha	Rh1DG116500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1056
Acc36I	ACCTGC	1 cut(s)	883
AccI	GTMKAC	1 cut(s)	491
AciI	CCGC	1 cut(s)	119
AcoI	YGGCCR	1 cut(s)	375
AcsI	RAATTY	3 cut(s)	535, 980, 1074
AcuI	CTGAAG	3 cut(s)	60, 330, 926
AfaI	GTAC	3 cut(s)	352, 800, 999
AflIII	ACRYGT	1 cut(s)	397
AgsI	TTSAA	1 cut(s)	15
AjnI	CCWGG	4 cut(s)	186, 330, 502, 884
AleI	CACNNNNGTG	1 cut(s)	371
AluBI	AGCT	7 cut(s)	95, 161, 363, 509, 878, 1046, 1087
AluI	AGCT	7 cut(s)	95, 161, 363, 509, 878, 1046, 1087
Alw26I	GTCTC	2 cut(s)	694, 998
AlwNI	CAGNNNCTG	2 cut(s)	107, 161
AoxI	GGCC	5 cut(s)	375, 413, 769, 901, 930
ApeKI	GCWGC	5 cut(s)	92, 107, 110, 170, 182
ApoI	RAATTY	3 cut(s)	535, 980, 1074
Asp700I	GAANNNNTTC	2 cut(s)	448, 834
AspS9I	GGNCC	2 cut(s)	83, 413
AvaII	GGWCC	1 cut(s)	83
BalI	TGGCCA	1 cut(s)	377
BbvI	GCAGC	5 cut(s)	94, 97, 104, 169, 182
BccI	CCATC	3 cut(s)	189, 266, 424
BciT130I	CCWGG	4 cut(s)	188, 332, 504, 886
BciVI	GTATCC	2 cut(s)	328, 400
BclI	TGATCA	1 cut(s)	1036
BcoDI	GTCTC	2 cut(s)	694, 998
BfaI	CTAG	1 cut(s)	1043
BfuAI	ACCTGC	1 cut(s)	883
BfuI	GTATCC	2 cut(s)	328, 400
BisI	GCNGC	5 cut(s)	93, 108, 111, 171, 183
BlsI	GCNGC	5 cut(s)	94, 109, 112, 172, 184
Bme1390I	CCNGG	4 cut(s)	188, 332, 504, 886
Bme18I	GGWCC	1 cut(s)	83
BmgT120I	GGNCC	2 cut(s)	83, 413
BmiI	GGNNCC	2 cut(s)	85, 322
BmrFI	CCNGG	4 cut(s)	188, 332, 504, 886
BmsI	GCATC	1 cut(s)	169
BpmI	CTGGAG	1 cut(s)	525
Bpu10I	CCTNAGC	1 cut(s)	1047
BsaJI	CCNNGG	3 cut(s)	76, 186, 933
BsaWI	WCCGGW	1 cut(s)	476
BsaXI	ACNNNNNCTCC	2 cut(s)	484, 514
Bse1I	ACTGG	1 cut(s)	638
Bse3DI	GCAATG	1 cut(s)	1023
BseBI	CCWGG	4 cut(s)	188, 332, 504, 886
BseDI	CCNNGG	3 cut(s)	76, 186, 933
BseGI	GGATG	2 cut(s)	219, 262
BseMI	GCAATG	1 cut(s)	1023
BseMII	CTCAG	6 cut(s)	360, 560, 840, 853, 993, 1061
BseNI	ACTGG	1 cut(s)	638
BseXI	GCAGC	5 cut(s)	94, 97, 104, 169, 182
BsgI	GTGCAG	1 cut(s)	96
BshFI	GGCC	5 cut(s)	377, 415, 771, 903, 932
BsiSI	CCGG	1 cut(s)	477
BslFI	GGGAC	1 cut(s)	69
BsmAI	GTCTC	2 cut(s)	694, 998
BsmFI	GGGAC	1 cut(s)	69
BsnI	GGCC	5 cut(s)	377, 415, 771, 903, 932
Bsp143I	GATC	2 cut(s)	1036, 1095
BspACI	CCGC	1 cut(s)	119
BspANI	GGCC	5 cut(s)	377, 415, 771, 903, 932
BspCNI	CTCAG	6 cut(s)	361, 559, 839, 852, 994, 1060
BspLI	GGNNCC	2 cut(s)	85, 322
BspMI	ACCTGC	1 cut(s)	883
BsrDI	GCAATG	1 cut(s)	1023
BsrI	ACTGG	1 cut(s)	638
BssECI	CCNNGG	3 cut(s)	76, 186, 933
BssMI	GATC	2 cut(s)	1036, 1095
BssT1I	CCWWGG	2 cut(s)	76, 933
Bst2UI	CCWGG	4 cut(s)	188, 332, 504, 886
Bst4CI	ACNGT	2 cut(s)	33, 340
Bst6I	CTCTTC	1 cut(s)	661
BstDEI	CTNAG	6 cut(s)	369, 546, 826, 839, 1002, 1047
BstF5I	GGATG	2 cut(s)	219, 262
BstKTI	GATC	2 cut(s)	1039, 1098
BstMAI	GTCTC	2 cut(s)	694, 998
BstMBI	GATC	2 cut(s)	1036, 1095
BstMWI	GCNNNNNNNGC	5 cut(s)	116, 125, 167, 179, 506
BstNI	CCWGG	4 cut(s)	188, 332, 504, 886
BstNSI	RCATGY	1 cut(s)	401
BstSCI	CCNGG	4 cut(s)	186, 330, 502, 884
BstV1I	GCAGC	5 cut(s)	94, 97, 104, 169, 182
BsuI	GTATCC	2 cut(s)	328, 400
BsuRI	GGCC	5 cut(s)	377, 415, 771, 903, 932
BtsCI	GGATG	2 cut(s)	219, 262
BtsIMutI	CAGTG	1 cut(s)	366
BveI	ACCTGC	1 cut(s)	883
CaiI	CAGNNNCTG	2 cut(s)	107, 161
Cfr13I	GGNCC	2 cut(s)	83, 413
Csp6I	GTAC	3 cut(s)	351, 799, 998
CspCI	CAANNNNNGTGG	4 cut(s)	61, 96, 522, 557
CviAII	CATG	5 cut(s)	249, 344, 398, 625, 1099
CviQI	GTAC	3 cut(s)	351, 799, 998
DdeI	CTNAG	6 cut(s)	369, 546, 826, 839, 1002, 1047
DpnI	GATC	2 cut(s)	1038, 1097
DpnII	GATC	2 cut(s)	1036, 1095
EaeI	YGGCCR	1 cut(s)	375
Eam1104I	CTCTTC	1 cut(s)	661
EarI	CTCTTC	1 cut(s)	661
Eco130I	CCWWGG	2 cut(s)	76, 933
Eco47I	GGWCC	1 cut(s)	83
Eco57I	CTGAAG	3 cut(s)	60, 330, 926
EcoRII	CCWGG	4 cut(s)	186, 330, 502, 884
EcoT14I	CCWWGG	2 cut(s)	76, 933
ErhI	CCWWGG	2 cut(s)	76, 933
FaeI	CATG	5 cut(s)	252, 347, 401, 628, 1102
FaqI	GGGAC	1 cut(s)	69
FatI	CATG	5 cut(s)	248, 343, 397, 624, 1098
FauNDI	CATATG	3 cut(s)	7, 496, 961
FbaI	TGATCA	1 cut(s)	1036
FblI	GTMKAC	1 cut(s)	491
Fnu4HI	GCNGC	5 cut(s)	93, 108, 111, 171, 183
FokI	GGATG	2 cut(s)	226, 269
Fsp4HI	GCNGC	5 cut(s)	93, 108, 111, 171, 183
FspBI	CTAG	1 cut(s)	1043
GluI	GCNGC	5 cut(s)	93, 108, 111, 171, 183
GsuI	CTGGAG	1 cut(s)	525
HaeIII	GGCC	5 cut(s)	377, 415, 771, 903, 932
HapII	CCGG	1 cut(s)	477
Hin1II	CATG	5 cut(s)	252, 347, 401, 628, 1102
HincII	GTYRAC	1 cut(s)	585
HindII	GTYRAC	1 cut(s)	585
HinfI	GANTC	4 cut(s)	11, 98, 131, 449
HpaII	CCGG	1 cut(s)	477
Hpy166II	GTNNAC	4 cut(s)	395, 492, 585, 631
Hpy188I	TCNGA	9 cut(s)	136, 310, 549, 796, 829, 842, 993, 1030, 1095
Hpy188III	TCNNGA	3 cut(s)	236, 269, 1049
Hpy8I	GTNNAC	4 cut(s)	395, 492, 585, 631
HpyAV	CCTTC	1 cut(s)	562
HpyCH4III	ACNGT	2 cut(s)	33, 340
HpyCH4V	TGCA	7 cut(s)	20, 72, 92, 113, 170, 606, 892
HpyF10VI	GCNNNNNNNGC	5 cut(s)	116, 125, 167, 179, 506
HpyF3I	CTNAG	6 cut(s)	369, 546, 826, 839, 1002, 1047
Hsp92II	CATG	5 cut(s)	252, 347, 401, 628, 1102
Ksp22I	TGATCA	1 cut(s)	1036
Kzo9I	GATC	2 cut(s)	1036, 1095
LmnI	GCTCC	2 cut(s)	505, 506
Lsp1109I	GCAGC	5 cut(s)	94, 97, 104, 169, 182
LweI	GCATC	1 cut(s)	169
MaeI	CTAG	1 cut(s)	1043
MaeIII	GTNAC	3 cut(s)	141, 289, 529
MalI	GATC	2 cut(s)	1038, 1097
MboI	GATC	2 cut(s)	1036, 1095
MboII	GAAGA	2 cut(s)	648, 796
MfeI	CAATTG	1 cut(s)	15
MlsI	TGGCCA	1 cut(s)	377
MluCI	AATT	6 cut(s)	15, 458, 535, 980, 1032, 1074
MluNI	TGGCCA	1 cut(s)	377
MlyI	GAGTC	1 cut(s)	125
MmeI	TCCRAC	1 cut(s)	837
MnlI	CCTC	4 cut(s)	364, 569, 835, 836
Mox20I	TGGCCA	1 cut(s)	377
MroXI	GAANNNNTTC	2 cut(s)	448, 834
MscI	TGGCCA	1 cut(s)	377
MseI	TTAA	2 cut(s)	225, 438
MslI	CAYNNNNRTG	4 cut(s)	371, 806, 869, 1068
Msp20I	TGGCCA	1 cut(s)	377
MspA1I	CMGCKG	1 cut(s)	95
MspI	CCGG	1 cut(s)	477
MspR9I	CCNGG	4 cut(s)	188, 332, 504, 886
MunI	CAATTG	1 cut(s)	15
MvaI	CCWGG	4 cut(s)	188, 332, 504, 886
MwoI	GCNNNNNNNGC	5 cut(s)	116, 125, 167, 179, 506
NdeI	CATATG	3 cut(s)	7, 496, 961
NdeII	GATC	2 cut(s)	1036, 1095
NlaIII	CATG	5 cut(s)	252, 347, 401, 628, 1102
NlaIV	GGNNCC	2 cut(s)	85, 322
NmuCI	GTSAC	1 cut(s)	289
NspI	RCATGY	1 cut(s)	401
OliI	CACNNNNGTG	1 cut(s)	371
PciI	ACATGT	1 cut(s)	397
PdmI	GAANNNNTTC	2 cut(s)	448, 834
PfeI	GAWTC	3 cut(s)	11, 98, 449
PfoI	TCCNGGA	1 cut(s)	502
PkrI	GCNGC	5 cut(s)	94, 109, 112, 172, 184
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
PscI	ACATGT	1 cut(s)	397
PsiI	TTATAA	1 cut(s)	1056
Psp6I	CCWGG	4 cut(s)	186, 330, 502, 884
PspGI	CCWGG	4 cut(s)	186, 330, 502, 884
PspN4I	GGNNCC	2 cut(s)	85, 322
PspPI	GGNCC	2 cut(s)	83, 413
PsrI	GAACNNNNNNTAC	2 cut(s)	436, 468
PstNI	CAGNNNCTG	2 cut(s)	107, 161
PvuII	CAGCTG	1 cut(s)	95
RsaI	GTAC	3 cut(s)	352, 800, 999
RsaNI	GTAC	3 cut(s)	351, 799, 998
RseI	CAYNNNNRTG	4 cut(s)	371, 806, 869, 1068
SaqAI	TTAA	2 cut(s)	225, 438
SatI	GCNGC	5 cut(s)	93, 108, 111, 171, 183
Sau3AI	GATC	2 cut(s)	1036, 1095
Sau96I	GGNCC	2 cut(s)	83, 413
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	4 cut(s)	188, 332, 504, 886
SfaNI	GCATC	1 cut(s)	169
SinI	GGWCC	1 cut(s)	83
SmiMI	CAYNNNNRTG	4 cut(s)	371, 806, 869, 1068
Sse9I	AATT	6 cut(s)	15, 458, 535, 980, 1032, 1074
SsiI	CCGC	1 cut(s)	119
SspI	AATATT	1 cut(s)	223
SspMI	CTAG	1 cut(s)	1043
StyD4I	CCNGG	4 cut(s)	186, 330, 502, 884
StyI	CCWWGG	2 cut(s)	76, 933
TaaI	ACNGT	2 cut(s)	33, 340
TasI	AATT	6 cut(s)	15, 458, 535, 980, 1032, 1074
TatI	WGTACW	1 cut(s)	798
TfiI	GAWTC	3 cut(s)	11, 98, 449
Tru1I	TTAA	2 cut(s)	225, 438
Tru9I	TTAA	2 cut(s)	225, 438
TscAI	CASTG	1 cut(s)	373
TseFI	GTSAC	1 cut(s)	289
TseI	GCWGC	5 cut(s)	92, 107, 110, 170, 182
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	9 cut(s)	285, 332, 581, 797, 840, 853, 973, 1052, 1086
TspGWI	ACGGA	1 cut(s)	482
TspRI	CASTG	1 cut(s)	373
VpaK11BI	GGWCC	1 cut(s)	83
XapI	RAATTY	3 cut(s)	535, 980, 1074
XceI	RCATGY	1 cut(s)	401
XmiI	GTMKAC	1 cut(s)	491
XmnI	GAANNNNTTC	2 cut(s)	448, 834
XspI	CTAG	1 cut(s)	1043

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.