Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0021880

Physical Location & Seq

Genomic Coordinates Forward (+)

68552805 .. 68556554

Gene Structure 3750 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21733

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGAAAGTCCAGATGTTATCCCATCCTTGCTCACTTTGGCATTGAATGATATTATGACTTATGATAAGGCTTCGAAATCTGGGGGCCCAAATGGATCTATCCGATTCAGAGTCCAAGATAGTGAAGCTCCGTGGGGCTTATTTGAGAGGAATTTTGGAAGGACAGATACCCAAGAGCCAGATCCAGAGGGAAGGGTTCCCCAGTGGGACAAAGCAAGTGTTCAAGAAATGAAAGACAAGTTTTCTGCCGTTGGCTTTGGCCCCTGCCAGCTAGCTGTTATGTCTGGTTTTTTGGGTCCTGATCTGATAGCCACAGAAACTTTATTAGCCACTGATCCAGAAGTTTTGCCGTGGGTTCAGAAGTATCAGCGCAGCAGAGAAACAGTGTCAGAAACAGATTATGAGGTTGATCTGATAACTACTCTCACAAAGTTGAGTGGTTTGGGCCAACAAATCAATTACGAGGCGTATACCTATCCAGTAAAAAAAGTTGATTTCAGCAAACTCAAATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009579 GO:0009636 GO:0009987 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016999 GO:0017001 GO:0017144 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0033554 GO:0034357 GO:0034599 GO:0042221 GO:0042651 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055035 GO:0055114 GO:0070887 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

171

Amino Acids

19.1

Weight (kDa)

4.68

Isoelectric Point (pI)

27.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0021880)

Species	Orthologous Gene IDs
malus_domestica	MD08G1188000.v1.1 MD15G1374000.v1.1
pyrus_communis	pycom08g16140
rosa_chinensis	RchiOBHm_Chr7g0242491

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	470
AclWI	GGATC	3 cut(s)	103, 176, 329
AcsI	RAATTY	1 cut(s)	151
AgsI	TTSAA	2 cut(s)	46, 224
AluBI	AGCT	3 cut(s)	128, 271, 275
AluI	AGCT	3 cut(s)	128, 271, 275
AlwI	GGATC	3 cut(s)	103, 176, 329
AoxI	GGCC	3 cut(s)	85, 259, 445
ApaI	GGGCCC	1 cut(s)	89
ApeKI	GCWGC	1 cut(s)	372
ApoI	RAATTY	1 cut(s)	151
AspLEI	GCGC	1 cut(s)	372
AspS9I	GGNCC	5 cut(s)	85, 86, 260, 296, 445
AsuII	TTCGAA	1 cut(s)	74
AsuNHI	GCTAGC	1 cut(s)	271
AvaII	GGWCC	1 cut(s)	296
BaeGI	GKGCMC	1 cut(s)	89
BanII	GRGCYC	1 cut(s)	89
BarI	GAAGNNNNNNTAC	2 cut(s)	151, 183
BbvI	GCAGC	1 cut(s)	384
BccI	CCATC	1 cut(s)	31
BceAI	ACGGC	2 cut(s)	233, 334
BfaI	CTAG	1 cut(s)	272
BisI	GCNGC	1 cut(s)	373
BlsI	GCNGC	1 cut(s)	374
Bme18I	GGWCC	1 cut(s)	296
BmgT120I	GGNCC	5 cut(s)	85, 86, 260, 296, 445
BmiI	GGNNCC	5 cut(s)	86, 87, 198, 262, 297
BmrI	ACTGGG	1 cut(s)	196
BmtI	GCTAGC	1 cut(s)	275
BmuI	ACTGGG	1 cut(s)	196
Bpu14I	TTCGAA	1 cut(s)	74
BsaJI	CCNNGG	2 cut(s)	131, 350
Bse1I	ACTGG	2 cut(s)	202, 479
BseDI	CCNNGG	2 cut(s)	131, 350
BseGI	GGATG	1 cut(s)	23
BseNI	ACTGG	2 cut(s)	202, 479
BseSI	GKGCMC	1 cut(s)	89
BseXI	GCAGC	1 cut(s)	384
BshFI	GGCC	3 cut(s)	87, 261, 447
BslFI	GGGAC	1 cut(s)	221
BsmFI	GGGAC	1 cut(s)	221
BsnI	GGCC	3 cut(s)	87, 261, 447
Bsp119I	TTCGAA	1 cut(s)	74
Bsp120I	GGGCCC	1 cut(s)	85
Bsp1286I	GDGCHC	1 cut(s)	89
Bsp143I	GATC	5 cut(s)	95, 181, 301, 334, 409
BspANI	GGCC	3 cut(s)	87, 261, 447
BspLI	GGNNCC	5 cut(s)	86, 87, 198, 262, 297
BspOI	GCTAGC	1 cut(s)	275
BspPI	GGATC	3 cut(s)	103, 176, 329
BspT104I	TTCGAA	1 cut(s)	74
BsrI	ACTGG	2 cut(s)	202, 479
BssECI	CCNNGG	2 cut(s)	131, 350
BssMI	GATC	5 cut(s)	95, 181, 301, 334, 409
BssNAI	GTATAC	1 cut(s)	471
Bst1107I	GTATAC	1 cut(s)	471
Bst4CI	ACNGT	1 cut(s)	385
BstBI	TTCGAA	1 cut(s)	74
BstC8I	GCNNGC	2 cut(s)	269, 273
BstDSI	CCRYGG	2 cut(s)	131, 350
BstF5I	GGATG	1 cut(s)	23
BstHHI	GCGC	1 cut(s)	372
BstKTI	GATC	5 cut(s)	98, 184, 304, 337, 412
BstMBI	GATC	5 cut(s)	95, 181, 301, 334, 409
BstSLI	GKGCMC	1 cut(s)	89
BstV1I	GCAGC	1 cut(s)	384
BstX2I	RGATCY	2 cut(s)	95, 181
BstYI	RGATCY	2 cut(s)	95, 181
BstZ17I	GTATAC	1 cut(s)	471
BsuRI	GGCC	3 cut(s)	87, 261, 447
BtgI	CCRYGG	2 cut(s)	131, 350
BtsCI	GGATG	1 cut(s)	23
BtsIMutI	CAGTG	3 cut(s)	209, 330, 390
Cac8I	GCNNGC	2 cut(s)	269, 273
CfoI	GCGC	1 cut(s)	372
Cfr13I	GGNCC	5 cut(s)	85, 86, 260, 296, 445
DpnI	GATC	5 cut(s)	97, 183, 303, 336, 411
DpnII	GATC	5 cut(s)	95, 181, 301, 334, 409
Eco24I	GRGCYC	1 cut(s)	89
Eco47I	GGWCC	1 cut(s)	296
EcoO109I	RGGNCCY	2 cut(s)	85, 296
EcoT38I	GRGCYC	1 cut(s)	89
FaiI	YATR	5 cut(s)	56, 63, 281, 402, 471
FaqI	GGGAC	1 cut(s)	221
FblI	GTMKAC	1 cut(s)	470
Fnu4HI	GCNGC	1 cut(s)	373
FokI	GGATG	1 cut(s)	10
FriOI	GRGCYC	1 cut(s)	89
Fsp4HI	GCNGC	1 cut(s)	373
FspBI	CTAG	1 cut(s)	272
GlaI	GCGC	1 cut(s)	371
GluI	GCNGC	1 cut(s)	373
HaeIII	GGCC	3 cut(s)	87, 261, 447
HhaI	GCGC	1 cut(s)	372
Hin6I	GCGC	1 cut(s)	370
HinP1I	GCGC	1 cut(s)	370
HinfI	GANTC	2 cut(s)	105, 111
Hpy166II	GTNNAC	1 cut(s)	471
Hpy188I	TCNGA	6 cut(s)	104, 110, 306, 360, 391, 414
Hpy188III	TCNNGA	5 cut(s)	11, 185, 224, 299, 338
Hpy8I	GTNNAC	1 cut(s)	471
HpyAV	CCTTC	2 cut(s)	153, 186
HpyCH4III	ACNGT	1 cut(s)	385
HspAI	GCGC	1 cut(s)	370
Kzo9I	GATC	5 cut(s)	95, 181, 301, 334, 409
LmnI	GCTCC	1 cut(s)	133
Lsp1109I	GCAGC	1 cut(s)	384
MaeI	CTAG	1 cut(s)	272
MalI	GATC	5 cut(s)	97, 183, 303, 336, 411
MboI	GATC	5 cut(s)	95, 181, 301, 334, 409
MflI	RGATCY	2 cut(s)	95, 181
MhlI	GDGCHC	1 cut(s)	89
MluCI	AATT	3 cut(s)	151, 457, 509
MlyI	GAGTC	1 cut(s)	120
MnlI	CCTC	4 cut(s)	141, 181, 397, 457
NdeII	GATC	5 cut(s)	95, 181, 301, 334, 409
NheI	GCTAGC	1 cut(s)	271
NlaIV	GGNNCC	5 cut(s)	86, 87, 198, 262, 297
NspV	TTCGAA	1 cut(s)	74
PfeI	GAWTC	1 cut(s)	105
PkrI	GCNGC	1 cut(s)	374
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
PpuMI	RGGWCCY	1 cut(s)	296
Psp5II	RGGWCCY	1 cut(s)	296
PspN4I	GGNNCC	5 cut(s)	86, 87, 198, 262, 297
PspOMI	GGGCCC	1 cut(s)	85
PspPI	GGNCC	5 cut(s)	85, 86, 260, 296, 445
PspPPI	RGGWCCY	1 cut(s)	296
PsuI	RGATCY	2 cut(s)	95, 181
SatI	GCNGC	1 cut(s)	373
Sau3AI	GATC	5 cut(s)	95, 181, 301, 334, 409
Sau96I	GGNCC	5 cut(s)	85, 86, 260, 296, 445
SchI	GAGTC	1 cut(s)	120
SduI	GDGCHC	1 cut(s)	89
SetI	ASST	5 cut(s)	130, 273, 277, 408, 476
SfuI	TTCGAA	1 cut(s)	74
SinI	GGWCC	1 cut(s)	296
Sse9I	AATT	3 cut(s)	151, 457, 509
SspMI	CTAG	1 cut(s)	272
TaaI	ACNGT	1 cut(s)	385
TaqI	TCGA	1 cut(s)	74
TasI	AATT	3 cut(s)	151, 457, 509
TfiI	GAWTC	1 cut(s)	105
TscAI	CASTG	3 cut(s)	209, 337, 390
TseI	GCWGC	1 cut(s)	372
TspDTI	ATGAA	1 cut(s)	245
TspGWI	ACGGA	1 cut(s)	120
TspRI	CASTG	3 cut(s)	209, 337, 390
VpaK11BI	GGWCC	1 cut(s)	296
XapI	RAATTY	1 cut(s)	151
XmiI	GTMKAC	1 cut(s)	470
XspI	CTAG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.