Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0026708

Physical Location & Seq

Genomic Coordinates Reverse (-)

9383 .. 9748

Gene Structure 366 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ15596

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGCTCTTTATGATCTCGGCTCATGATTCAATTGCCATGTATTTAGCTATTGAACCTCAAAGTTTATGTTTTTATGTGATCGCAGCATCAAAAAGAAAGTCTGAATTTTCCACGGAAGCCGGCTCGAAATATTTGATCTTAGGTGCATTTCCCTCTGGAATATTACTGTTTGGGTACGACCGGACAACTACCGATATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko05012 map00190 map01100 map04714 map04723 map05012

Pfam Domains

Protein Families

Proton_antipo_M

Protein Analysis

66

Amino Acids

7.3

Weight (kDa)

5.56

Isoelectric Point (pI)

60.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proton_antipo_M	PF00361	7 - 58	3.3e-11	NADH:quinone oxidoreductase/Mrp antiporter, TM

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0026708)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_MTg0498181
rosa_roxburghii	Rroxscaffold_2G00119200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	104
AfaI	GTAC	1 cut(s)	176
AgsI	TTSAA	2 cut(s)	30, 53
AluBI	AGCT	1 cut(s)	47
AluI	AGCT	1 cut(s)	47
ApeKI	GCWGC	1 cut(s)	83
ApoI	RAATTY	1 cut(s)	104
ArsI	GACNNNNNNTTYG	2 cut(s)	83, 115
BbvI	GCAGC	1 cut(s)	95
BisI	GCNGC	1 cut(s)	84
BlsI	GCNGC	1 cut(s)	85
BmsI	GCATC	1 cut(s)	95
BsaJI	CCNNGG	1 cut(s)	111
BsaWI	WCCGGW	1 cut(s)	180
Bse118I	RCCGGY	1 cut(s)	119
BseDI	CCNNGG	1 cut(s)	111
BseXI	GCAGC	1 cut(s)	95
Bsh1285I	CGRYCG	1 cut(s)	181
BsiEI	CGRYCG	1 cut(s)	181
BsiSI	CCGG	2 cut(s)	120, 181
Bsp143I	GATC	3 cut(s)	12, 78, 135
BspHI	TCATGA	1 cut(s)	22
BsrFI	RCCGGY	1 cut(s)	119
BssAI	RCCGGY	1 cut(s)	119
BssECI	CCNNGG	1 cut(s)	111
BssMI	GATC	3 cut(s)	12, 78, 135
Bst4CI	ACNGT	1 cut(s)	168
BstC8I	GCNNGC	1 cut(s)	121
BstDEI	CTNAG	1 cut(s)	139
BstDSI	CCRYGG	1 cut(s)	111
BstKTI	GATC	3 cut(s)	15, 81, 138
BstMBI	GATC	3 cut(s)	12, 78, 135
BstMCI	CGRYCG	1 cut(s)	181
BstV1I	GCAGC	1 cut(s)	95
BtgI	CCRYGG	1 cut(s)	111
Cac8I	GCNNGC	1 cut(s)	121
CciI	TCATGA	1 cut(s)	22
Cfr10I	RCCGGY	1 cut(s)	119
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	2 cut(s)	23, 37
CviJI	RGCY	4 cut(s)	20, 47, 119, 123
CviKI_1	RGCY	4 cut(s)	20, 47, 119, 123
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	1 cut(s)	139
DpnI	GATC	3 cut(s)	14, 80, 137
DpnII	GATC	3 cut(s)	12, 78, 135
FaeI	CATG	2 cut(s)	26, 40
FaiI	YATR	7 cut(s)	11, 24, 38, 67, 75, 197, 199
FatI	CATG	2 cut(s)	22, 36
Fnu4HI	GCNGC	1 cut(s)	84
Fsp4HI	GCNGC	1 cut(s)	84
GluI	GCNGC	1 cut(s)	84
HapII	CCGG	2 cut(s)	120, 181
Hin1II	CATG	2 cut(s)	26, 40
HinfI	GANTC	1 cut(s)	26
HpaII	CCGG	2 cut(s)	120, 181
Hpy188I	TCNGA	1 cut(s)	103
Hpy188III	TCNNGA	2 cut(s)	23, 156
HpyCH4III	ACNGT	1 cut(s)	168
HpyCH4V	TGCA	1 cut(s)	146
HpyF3I	CTNAG	1 cut(s)	139
Hsp92II	CATG	2 cut(s)	26, 40
KroI	GCCGGC	1 cut(s)	119
KroNI	GCCGGC	1 cut(s)	121
Kzo9I	GATC	3 cut(s)	12, 78, 135
LpnPI	CCDG	3 cut(s)	133, 141, 194
Lsp1109I	GCAGC	1 cut(s)	95
LweI	GCATC	1 cut(s)	95
MalI	GATC	3 cut(s)	14, 80, 137
MboI	GATC	3 cut(s)	12, 78, 135
MfeI	CAATTG	1 cut(s)	30
MluCI	AATT	2 cut(s)	30, 104
MnlI	CCTC	2 cut(s)	66, 163
MroNI	GCCGGC	1 cut(s)	119
MspI	CCGG	2 cut(s)	120, 181
MunI	CAATTG	1 cut(s)	30
NaeI	GCCGGC	1 cut(s)	121
NdeII	GATC	3 cut(s)	12, 78, 135
NgoMIV	GCCGGC	1 cut(s)	119
NlaIII	CATG	2 cut(s)	26, 40
PagI	TCATGA	1 cut(s)	22
PdiI	GCCGGC	1 cut(s)	121
PfeI	GAWTC	1 cut(s)	26
PkrI	GCNGC	1 cut(s)	85
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
SatI	GCNGC	1 cut(s)	84
Sau3AI	GATC	3 cut(s)	12, 78, 135
SetI	ASST	3 cut(s)	49, 58, 145
SfaNI	GCATC	1 cut(s)	95
SgeI	CNNG	8 cut(s)	28, 35, 49, 124, 132, 136, 168, 193
Sse9I	AATT	2 cut(s)	30, 104
SspI	AATATT	2 cut(s)	131, 162
TaaI	ACNGT	1 cut(s)	168
TaqI	TCGA	1 cut(s)	125
TasI	AATT	2 cut(s)	30, 104
TfiI	GAWTC	1 cut(s)	26
TseI	GCWGC	1 cut(s)	83
TspGWI	ACGGA	1 cut(s)	128
XapI	RAATTY	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.