Rroxscaffold_2G00119200

NAD(P)H-quinone oxidoreductase subunit 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0026708
Physical Location & Seq
Reverse (-)
51091649 .. 51094542
2894 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00119200.1

Sequence Viewer

Length: 522 bp
ATGGCTATAACAGAGTTTCTGTTATTCGTATTAACAGCTACTCTAGGAGGAATGTTTTTATGCGGTGCTAACGATTTAATAACTATCTTTGTAGCTCCAGAATGTTTCAGTTTATGCTCCTACCTATTATCTGGATATACCAAGAAAGATGTACGGTCTAATGAGGCTACTACGAAGTATTTACTCATGGGTGGGGCAAGCTCTTCTATTCTGATTGATACAATAGAAACCTCTGGTAAAATGCCCACCCGTAACCCAGCGGATAAAGTACATTACATAGTCCGTTTTAGGGATTGGGGACTTACCCACTCAGTGACTTTGGCACTGGACGTTCCCAAAATGGGTACTATCGGGTCGGGTGAATTCAATAATTCAATAATAGACGCCCGTTGGCATTCCAGCCTTCCTTCTCCTTTCAGGGCCTACCCGAAAGAGAATCCAGTACTTCTTGGTCGTGAATATCTGAATAGGACGAACCGCCCCGCGGATATCTTTGCTTCGGAACAAAACAATTTGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko03010 map00190 map01100 map03010
Pfam Domains
Protein Families
Proton_antipo_M

Protein Analysis

173

Amino Acids

19.14

Weight (kDa)

6.82

Isoelectric Point (pI)

47.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Proton_antipo_M PF00361 23 - 72 1.8e-10 NADH:quinone oxidoreductase/Mrp antiporter, TM
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0026708)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_MTg0498181
rosa_roxburghii Rroxscaffold_2G00119200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 485
AciI CCGC 5 cut(s) 63, 260, 478, 483, 485
AcsI RAATTY 1 cut(s) 362
AcyI GRCGYC 1 cut(s) 384
AdeI CACNNNGTG 1 cut(s) 313
AfaI GTAC 4 cut(s) 153, 270, 346, 444
AfiI CCNNNNNNNGG 3 cut(s) 289, 341, 484
AgsI TTSAA 3 cut(s) 367, 375, 517
AluBI AGCT 3 cut(s) 38, 95, 201
AluI AGCT 3 cut(s) 38, 95, 201
AoxI GGCC 1 cut(s) 420
ApoI RAATTY 1 cut(s) 362
AspS9I GGNCC 1 cut(s) 420
AsuHPI GGTGA 1 cut(s) 371
BfaI CTAG 1 cut(s) 44
BmcAI AGTACT 1 cut(s) 444
BmgT120I GGNCC 1 cut(s) 420
BpmI CTGGAG 1 cut(s) 81
BsaHI GRCGYC 1 cut(s) 384
BsaJI CCNNGG 1 cut(s) 483
Bsc4I CCNNNNNNNGG 3 cut(s) 289, 341, 484
Bse1I ACTGG 2 cut(s) 330, 440
BseDI CCNNGG 1 cut(s) 483
BseLI CCNNNNNNNGG 3 cut(s) 289, 341, 484
BseMII CTCAG 1 cut(s) 324
BseNI ACTGG 2 cut(s) 330, 440
BseYI CCCAGC 1 cut(s) 256
Bsh1236I CGCG 1 cut(s) 485
BshFI GGCC 1 cut(s) 422
BslFI GGGAC 1 cut(s) 312
BslI CCNNNNNNNGG 3 cut(s) 289, 341, 484
BsmFI GGGAC 1 cut(s) 312
BsmI GAATGC 1 cut(s) 394
BsnI GGCC 1 cut(s) 422
BspACI CCGC 5 cut(s) 63, 260, 478, 483, 485
BspANI GGCC 1 cut(s) 422
BspCNI CTCAG 1 cut(s) 323
BspFNI CGCG 1 cut(s) 485
BspQI GCTCTTC 1 cut(s) 208
BsrI ACTGG 2 cut(s) 330, 440
BssECI CCNNGG 1 cut(s) 483
BssNI GRCGYC 1 cut(s) 384
Bst4CI ACNGT 1 cut(s) 156
Bst6I CTCTTC 1 cut(s) 208
BstACI GRCGYC 1 cut(s) 384
BstC8I GCNNGC 1 cut(s) 199
BstDEI CTNAG 1 cut(s) 310
BstDSI CCRYGG 1 cut(s) 483
BstFNI CGCG 1 cut(s) 485
BstUI CGCG 1 cut(s) 485
BsuRI GGCC 1 cut(s) 422
BtgI CCRYGG 1 cut(s) 483
BtsIMutI CAGTG 2 cut(s) 318, 323
Cac8I GCNNGC 1 cut(s) 199
Cfr13I GGNCC 1 cut(s) 420
Cfr42I CCGCGG 1 cut(s) 486
CseI GACGC 1 cut(s) 392
Csp6I GTAC 4 cut(s) 152, 269, 345, 443
CviAII CATG 1 cut(s) 187
CviJI RGCY 7 cut(s) 5, 38, 95, 167, 201, 402, 422
CviKI_1 RGCY 7 cut(s) 5, 38, 95, 167, 201, 402, 422
CviQI GTAC 4 cut(s) 152, 269, 345, 443
DdeI CTNAG 1 cut(s) 310
DraIII CACNNNGTG 1 cut(s) 313
Eam1104I CTCTTC 1 cut(s) 208
EarI CTCTTC 1 cut(s) 208
Eco32I GATATC 1 cut(s) 490
EcoO109I RGGNCCY 1 cut(s) 420
EcoRI GAATTC 1 cut(s) 362
EcoRV GATATC 1 cut(s) 490
FaeI CATG 1 cut(s) 190
FaiI YATR 6 cut(s) 8, 61, 115, 138, 188, 278
FaqI GGGAC 1 cut(s) 312
FatI CATG 1 cut(s) 186
FauI CCCGC 1 cut(s) 490
FspBI CTAG 1 cut(s) 44
GsaI CCCAGC 1 cut(s) 260
GsuI CTGGAG 1 cut(s) 81
HaeIII GGCC 1 cut(s) 422
HgaI GACGC 1 cut(s) 392
Hin1I GRCGYC 1 cut(s) 384
Hin1II CATG 1 cut(s) 190
HinfI GANTC 1 cut(s) 436
HphI GGTGA 1 cut(s) 371
Hpy188I TCNGA 3 cut(s) 213, 465, 502
Hpy188III TCNNGA 3 cut(s) 98, 132, 455
HpyAV CCTTC 2 cut(s) 413, 417
HpyCH4III ACNGT 1 cut(s) 156
HpyCH4IV ACGT 1 cut(s) 330
HpyF3I CTNAG 1 cut(s) 310
HpySE526I ACGT 1 cut(s) 330
Hsp92I GRCGYC 1 cut(s) 384
Hsp92II CATG 1 cut(s) 190
KspI CCGCGG 1 cut(s) 486
LguI GCTCTTC 1 cut(s) 208
LmnI GCTCC 2 cut(s) 100, 122
LpnPI CCDG 8 cut(s) 111, 117, 219, 270, 311, 403, 412, 453
MaeI CTAG 1 cut(s) 44
MaeII ACGT 1 cut(s) 330
MaeIII GTNAC 2 cut(s) 251, 313
MboII GAAGA 1 cut(s) 195
MluCI AATT 4 cut(s) 362, 370, 511, 517
MnlI CCTC 3 cut(s) 41, 157, 241
MseI TTAA 2 cut(s) 32, 77
MspA1I CMGCKG 2 cut(s) 260, 485
Mva1269I GAATGC 1 cut(s) 394
MvnI CGCG 1 cut(s) 485
NlaIII CATG 1 cut(s) 190
NmuCI GTSAC 1 cut(s) 313
PciSI GCTCTTC 1 cut(s) 208
PctI GAATGC 1 cut(s) 394
PfeI GAWTC 1 cut(s) 436
PspFI CCCAGC 1 cut(s) 256
PspPI GGNCC 1 cut(s) 420
RsaI GTAC 4 cut(s) 153, 270, 346, 444
RsaNI GTAC 4 cut(s) 152, 269, 345, 443
SacII CCGCGG 1 cut(s) 486
SapI GCTCTTC 1 cut(s) 208
SaqAI TTAA 2 cut(s) 32, 77
Sau96I GGNCC 1 cut(s) 420
ScaI AGTACT 1 cut(s) 444
SetI ASST 6 cut(s) 40, 97, 126, 203, 233, 333
Sfr303I CCGCGG 1 cut(s) 486
SgrBI CCGCGG 1 cut(s) 486
Sse9I AATT 4 cut(s) 362, 370, 511, 517
SsiI CCGC 5 cut(s) 63, 260, 478, 483, 485
SspMI CTAG 1 cut(s) 44
TaaI ACNGT 1 cut(s) 156
TaiI ACGT 1 cut(s) 333
TasI AATT 4 cut(s) 362, 370, 511, 517
TatI WGTACW 2 cut(s) 268, 442
TfiI GAWTC 1 cut(s) 436
Tru1I TTAA 2 cut(s) 32, 77
Tru9I TTAA 2 cut(s) 32, 77
TscAI CASTG 2 cut(s) 318, 330
TseFI GTSAC 1 cut(s) 313
Tsp45I GTSAC 1 cut(s) 313
TspGWI ACGGA 1 cut(s) 272
TspRI CASTG 2 cut(s) 318, 330
XapI RAATTY 1 cut(s) 362
XspI CTAG 1 cut(s) 44
ZrmI AGTACT 1 cut(s) 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.