RLG00000000927

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0030600
Physical Location & Seq
Reverse (-)
8088343 .. 8089419
1077 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000927

Sequence Viewer

Length: 687 bp
ATGTATGCACGACCAGTTCTCACTTTTACTAGCCAAATTGAAAGAGAACGATCAAGCTCTGGAGTCGAGGCATGTATGAACACTCAGGCTTTGAGGAAGTTCATGAAAGAGAATCAGATACTAGAGTGTGCTCATTTAGTGAGTCAGTGTAACAAGTTGGAGAATGAGTGCTTGCTCTACGATCATGATAGAGAGGCTTTGATGGATTTTAGGTACGATGCTAATCAGAGGGCCAAGGAGGTTGAGTTTCGAGTTAAAGAGTGCGGTTGGGTGGGGCCTCTTCACAATTGGTGCCATGGGTCCTTGATGGACAACGATCGGTTCTCCAGGAATAAACCAAGTCGGGATGGCGGTGGCCATGAAGTTAACAACGCTAATTTTCTCTTGTCTGAGATAGTAACGATTTGCGGAGTGTCAGGATGGAGGGTTAGAGGATGGTGGGAGGGGCTGTGCGTCCTTGGATTGGCACGAGATCTCATATTTCTTCTCTGTGCGCCCTTGGATCTGTGTGCAGATCGGAGTAGGGTGCTTTGGTGGAAGAAGTTTGATGGTGACAGATCCAAAAGCTCTTATAGCCTGCTTGGATTTGAGCGTGACCTGTTGGCGGGTGGGCAATCGATGGTGGACGGTGGCAGGTGTGATAACGGTGTGGTTGTGGCAGAAACTCAGGTGAAGAAGTGGCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

229

Amino Acids

26.06

Weight (kDa)

6.94

Isoelectric Point (pI)

47.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030600)

Species Orthologous Gene IDs
rosa_laevigata RLG00000000927
rosa_multiflora Rmu_sc0005102.1_g000010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 624
Acc36I ACCTGC 1 cut(s) 624
AccB1I GGYRCC 1 cut(s) 291
AciI CCGC 4 cut(s) 264, 351, 408, 605
AclWI GGATC 2 cut(s) 510, 552
AcoI YGGCCR 1 cut(s) 355
AfaI GTAC 1 cut(s) 215
AfiI CCNNNNNNNGG 2 cut(s) 463, 604
AgsI TTSAA 1 cut(s) 41
AjnI CCWGG 1 cut(s) 326
AluBI AGCT 2 cut(s) 57, 567
AluI AGCT 2 cut(s) 57, 567
Alw21I GWGCWC 1 cut(s) 133
AlwI GGATC 2 cut(s) 510, 552
AoxI GGCC 3 cut(s) 231, 275, 355
AspLEI GCGC 1 cut(s) 496
AspS9I GGNCC 3 cut(s) 231, 275, 300
AsuHPI GGTGA 2 cut(s) 563, 682
AvaII GGWCC 1 cut(s) 300
BaeI ACNNNNGTAYC 2 cut(s) 110, 143
BalI TGGCCA 1 cut(s) 357
BanI GGYRCC 1 cut(s) 291
BauI CACGAG 1 cut(s) 468
Bbv12I GWGCWC 1 cut(s) 133
BccI CCATC 7 cut(s) 196, 301, 341, 414, 429, 542, 613
BciT130I CCWGG 1 cut(s) 328
BfaI CTAG 2 cut(s) 30, 122
BfuAI ACCTGC 1 cut(s) 624
BglII AGATCT 1 cut(s) 472
Bme1390I CCNGG 1 cut(s) 328
Bme18I GGWCC 1 cut(s) 300
BmgT120I GGNCC 3 cut(s) 231, 275, 300
BmiI GGNNCC 3 cut(s) 276, 293, 301
BmrFI CCNGG 1 cut(s) 328
BmsI GCATC 1 cut(s) 208
BpmI CTGGAG 2 cut(s) 81, 310
Bsa29I ATCGAT 1 cut(s) 617
BsaBI GATNNNNATC 1 cut(s) 222
BsaJI CCNNGG 4 cut(s) 234, 295, 457, 498
BsaXI ACNNNNNCTCC 6 cut(s) 152, 182, 230, 260, 434, 464
Bsc4I CCNNNNNNNGG 2 cut(s) 463, 604
Bse1I ACTGG 1 cut(s) 14
Bse8I GATNNNNATC 1 cut(s) 222
BseBI CCWGG 1 cut(s) 328
BseCI ATCGAT 1 cut(s) 617
BseDI CCNNGG 4 cut(s) 234, 295, 457, 498
BseGI GGATG 3 cut(s) 352, 425, 440
BseJI GATNNNNATC 1 cut(s) 222
BseLI CCNNNNNNNGG 2 cut(s) 463, 604
BseMII CTCAG 3 cut(s) 98, 381, 680
BseNI ACTGG 1 cut(s) 14
BsgI GTGCAG 1 cut(s) 531
Bsh1285I CGRYCG 1 cut(s) 319
BshFI GGCC 3 cut(s) 233, 277, 357
BshNI GGYRCC 1 cut(s) 291
BshVI ATCGAT 1 cut(s) 617
BsiEI CGRYCG 1 cut(s) 319
BsiHKAI GWGCWC 1 cut(s) 133
BslI CCNNNNNNNGG 2 cut(s) 463, 604
BsnI GGCC 3 cut(s) 233, 277, 357
Bsp1286I GDGCHC 1 cut(s) 133
Bsp143I GATC 7 cut(s) 50, 181, 316, 472, 502, 514, 557
Bsp19I CCATGG 1 cut(s) 295
BspACI CCGC 4 cut(s) 264, 351, 408, 605
BspANI GGCC 3 cut(s) 233, 277, 357
BspCNI CTCAG 3 cut(s) 97, 382, 679
BspDI ATCGAT 1 cut(s) 617
BspHI TCATGA 2 cut(s) 102, 184
BspLI GGNNCC 3 cut(s) 276, 293, 301
BspMI ACCTGC 1 cut(s) 624
BspPI GGATC 2 cut(s) 510, 552
BspT107I GGYRCC 1 cut(s) 291
BsrI ACTGG 1 cut(s) 14
BssECI CCNNGG 4 cut(s) 234, 295, 457, 498
BssMI GATC 7 cut(s) 50, 181, 316, 472, 502, 514, 557
BssSI CACGAG 1 cut(s) 468
BssT1I CCWWGG 4 cut(s) 234, 295, 457, 498
Bst2BI CACGAG 1 cut(s) 468
Bst2UI CCWGG 1 cut(s) 328
Bst4CI ACNGT 2 cut(s) 629, 647
Bst6I CTCTTC 1 cut(s) 285
BstC8I GCNNGC 2 cut(s) 173, 578
BstDEI CTNAG 3 cut(s) 84, 390, 666
BstDSI CCRYGG 1 cut(s) 295
BstF5I GGATG 3 cut(s) 352, 425, 440
BstHHI GCGC 1 cut(s) 496
BstKTI GATC 7 cut(s) 53, 184, 319, 475, 505, 517, 560
BstMBI GATC 7 cut(s) 50, 181, 316, 472, 502, 514, 557
BstMCI CGRYCG 1 cut(s) 319
BstMWI GCNNNNNNNGC 1 cut(s) 573
BstNI CCWGG 1 cut(s) 328
BstNSI RCATGY 1 cut(s) 75
BstSCI CCNGG 1 cut(s) 326
BstX2I RGATCY 3 cut(s) 472, 502, 557
BstYI RGATCY 3 cut(s) 472, 502, 557
Bsu15I ATCGAT 1 cut(s) 617
BsuRI GGCC 3 cut(s) 233, 277, 357
BsuTUI ATCGAT 1 cut(s) 617
BtgI CCRYGG 1 cut(s) 295
BtsCI GGATG 3 cut(s) 352, 425, 440
BtsIMutI CAGTG 1 cut(s) 152
BveI ACCTGC 1 cut(s) 624
Cac8I GCNNGC 2 cut(s) 173, 578
CciI TCATGA 2 cut(s) 102, 184
CfoI GCGC 1 cut(s) 496
Cfr13I GGNCC 3 cut(s) 231, 275, 300
ClaI ATCGAT 1 cut(s) 617
CseI GACGC 1 cut(s) 442
Csp6I GTAC 1 cut(s) 214
CviAII CATG 5 cut(s) 72, 103, 185, 296, 359
CviQI GTAC 1 cut(s) 214
DdeI CTNAG 3 cut(s) 84, 390, 666
DpnI GATC 7 cut(s) 52, 183, 318, 474, 504, 516, 559
DpnII GATC 7 cut(s) 50, 181, 316, 472, 502, 514, 557
EaeI YGGCCR 1 cut(s) 355
Eam1104I CTCTTC 1 cut(s) 285
EarI CTCTTC 1 cut(s) 285
Eco130I CCWWGG 4 cut(s) 234, 295, 457, 498
Eco47I GGWCC 1 cut(s) 300
EcoO109I RGGNCCY 2 cut(s) 275, 300
EcoRII CCWGG 1 cut(s) 326
EcoT14I CCWWGG 4 cut(s) 234, 295, 457, 498
ErhI CCWWGG 4 cut(s) 234, 295, 457, 498
FaeI CATG 5 cut(s) 75, 106, 188, 299, 362
FaiI YATR 9 cut(s) 6, 73, 77, 104, 186, 297, 360, 479, 573
FatI CATG 5 cut(s) 71, 102, 184, 295, 358
FauI CCCGC 1 cut(s) 598
FokI GGATG 3 cut(s) 359, 432, 447
FspBI CTAG 2 cut(s) 30, 122
GlaI GCGC 1 cut(s) 495
GsuI CTGGAG 2 cut(s) 81, 310
HaeIII GGCC 3 cut(s) 233, 277, 357
HgaI GACGC 1 cut(s) 442
HhaI GCGC 1 cut(s) 496
Hin1II CATG 5 cut(s) 75, 106, 188, 299, 362
Hin6I GCGC 1 cut(s) 494
HinP1I GCGC 1 cut(s) 494
HincII GTYRAC 1 cut(s) 367
HindII GTYRAC 1 cut(s) 367
HinfI GANTC 3 cut(s) 63, 112, 142
HpaI GTTAAC 1 cut(s) 367
HphI GGTGA 2 cut(s) 563, 682
Hpy166II GTNNAC 2 cut(s) 367, 625
Hpy188I TCNGA 4 cut(s) 117, 228, 391, 519
Hpy188III TCNNGA 5 cut(s) 60, 103, 185, 344, 417
Hpy8I GTNNAC 2 cut(s) 367, 625
HpyCH4III ACNGT 2 cut(s) 629, 647
HpyCH4V TGCA 2 cut(s) 8, 512
HpyF10VI GCNNNNNNNGC 1 cut(s) 573
HpyF3I CTNAG 3 cut(s) 84, 390, 666
Hsp92II CATG 5 cut(s) 75, 106, 188, 299, 362
HspAI GCGC 1 cut(s) 494
KspAI GTTAAC 1 cut(s) 367
Kzo9I GATC 7 cut(s) 50, 181, 316, 472, 502, 514, 557
LweI GCATC 1 cut(s) 208
MaeI CTAG 2 cut(s) 30, 122
MaeIII GTNAC 4 cut(s) 149, 397, 551, 593
MalI GATC 7 cut(s) 52, 183, 318, 474, 504, 516, 559
MboI GATC 7 cut(s) 50, 181, 316, 472, 502, 514, 557
MboII GAAGA 4 cut(s) 272, 476, 550, 685
MfeI CAATTG 1 cut(s) 286
MflI RGATCY 3 cut(s) 472, 502, 557
MhlI GDGCHC 1 cut(s) 133
MlsI TGGCCA 1 cut(s) 357
MluCI AATT 3 cut(s) 36, 286, 376
MluNI TGGCCA 1 cut(s) 357
MlyI GAGTC 2 cut(s) 72, 151
MmeI TCCRAC 1 cut(s) 138
MnlI CCTC 9 cut(s) 61, 87, 187, 222, 232, 288, 417, 425, 436
Mox20I TGGCCA 1 cut(s) 357
MscI TGGCCA 1 cut(s) 357
MseI TTAA 2 cut(s) 255, 366
Msp20I TGGCCA 1 cut(s) 357
MspR9I CCNGG 1 cut(s) 328
MunI CAATTG 1 cut(s) 286
MvaI CCWGG 1 cut(s) 328
MwoI GCNNNNNNNGC 1 cut(s) 573
NcoI CCATGG 1 cut(s) 295
NdeII GATC 7 cut(s) 50, 181, 316, 472, 502, 514, 557
NlaIII CATG 5 cut(s) 75, 106, 188, 299, 362
NlaIV GGNNCC 3 cut(s) 276, 293, 301
NmuCI GTSAC 2 cut(s) 551, 593
NspI RCATGY 1 cut(s) 75
PagI TCATGA 2 cut(s) 102, 184
PaqCI CACCTGC 1 cut(s) 624
PfeI GAWTC 1 cut(s) 112
PfoI TCCNGGA 1 cut(s) 326
Ple19I CGATCG 1 cut(s) 319
PleI GAGTC 2 cut(s) 71, 150
PpsI GAGTC 2 cut(s) 71, 150
PpuMI RGGWCCY 1 cut(s) 300
Psp5II RGGWCCY 1 cut(s) 300
Psp6I CCWGG 1 cut(s) 326
PspGI CCWGG 1 cut(s) 326
PspN4I GGNNCC 3 cut(s) 276, 293, 301
PspPI GGNCC 3 cut(s) 231, 275, 300
PspPPI RGGWCCY 1 cut(s) 300
PsuI RGATCY 3 cut(s) 472, 502, 557
PvuI CGATCG 1 cut(s) 319
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
SaqAI TTAA 2 cut(s) 255, 366
Sau3AI GATC 7 cut(s) 50, 181, 316, 472, 502, 514, 557
Sau96I GGNCC 3 cut(s) 231, 275, 300
SchI GAGTC 2 cut(s) 72, 151
ScrFI CCNGG 1 cut(s) 328
SduI GDGCHC 1 cut(s) 133
SetI ASST 7 cut(s) 59, 215, 243, 569, 600, 638, 672
SfaNI GCATC 1 cut(s) 208
SinI GGWCC 1 cut(s) 300
Sse9I AATT 3 cut(s) 36, 286, 376
SsiI CCGC 4 cut(s) 264, 351, 408, 605
SspMI CTAG 2 cut(s) 30, 122
StyD4I CCNGG 1 cut(s) 326
StyI CCWWGG 4 cut(s) 234, 295, 457, 498
TaaI ACNGT 2 cut(s) 629, 647
TaqI TCGA 3 cut(s) 66, 250, 617
TasI AATT 3 cut(s) 36, 286, 376
TfiI GAWTC 1 cut(s) 112
Tru1I TTAA 2 cut(s) 255, 366
Tru9I TTAA 2 cut(s) 255, 366
TscAI CASTG 1 cut(s) 152
TseFI GTSAC 2 cut(s) 551, 593
Tsp45I GTSAC 2 cut(s) 551, 593
TspDTI ATGAA 4 cut(s) 91, 92, 119, 375
TspRI CASTG 1 cut(s) 152
VpaK11BI GGWCC 1 cut(s) 300
XceI RCATGY 1 cut(s) 75
XspI CTAG 2 cut(s) 30, 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.