Rmu_sc0005102.1_g000010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005102.1
OG0030600
Physical Location & Seq
Reverse (-)
28425 .. 29616
1192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005102.1_g000010.1.cds

Sequence Viewer

Length: 804 bp
atggatcttccgcaagaaatcgacgattccatcaaagagataattgaccacatcctgggcctccctgtgtccacacaaactctcaaattgaatctccagttcttagaagtggcaaagcaacagatgcacgaccagtactcgcttctacttgccaaattgaaagagaaggatcaagcactggggtgctttaaggtcgaggcatgtatgaacgctcaggctttgagtaagttcatggaggagaatcagatactagagtgtgcttatttagtgaaagaacgtgcgtcatgcgcgcacccaaatctcaccttcaatcgttcttccttcctcgttcggcggccctctgagttagcgttggcctttggcctattcatcgtactgcgggggcggccgggcagggcctcttcaccattggtgtcatgggtccttgacggacaacgatcgattcttaagaataaaccaagtcgggatggcggtggccatgaggttaacaacgctaattttctcttgtctgagatagtgaggatttgcggagagtcaggatggagggttaaaggatggtgggaggggctgcgtgtccttggatgggaacgagatctcagatttcttctttgtgcgcccttggatctgtgtgcagatcggagtagggtgctttggtggaagaagtttgatggtgacagatcaagctcttatggccggcctggatttgagcgtgacctgttggtgggcaggcagtcgatggtggatggtggcaaatgtgacagcggtgtggtagcggcaagaactcaggtgaagaagtggcgttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

267

Amino Acids

30.24

Weight (kDa)

9.02

Isoelectric Point (pI)

54.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030600)

Species Orthologous Gene IDs
rosa_laevigata RLG00000000927
rosa_multiflora Rmu_sc0005102.1_g000010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 55
AccII CGCG 1 cut(s) 290
AciI CCGC 8 cut(s) 11, 334, 379, 385, 471, 528, 762, 773
AclWI GGATC 3 cut(s) 12, 177, 630
AcoI YGGCCR 3 cut(s) 386, 475, 691
AfaI GTAC 2 cut(s) 137, 375
AfiI CCNNNNNNNGG 3 cut(s) 55, 583, 721
AflII CTTAAG 1 cut(s) 446
AgsI TTSAA 3 cut(s) 91, 160, 310
AjnI CCWGG 2 cut(s) 54, 697
AleI CACNNNNGTG 1 cut(s) 181
AluBI AGCT 1 cut(s) 684
AluI AGCT 1 cut(s) 684
AlwI GGATC 3 cut(s) 12, 177, 630
AoxI GGCC 9 cut(s) 58, 335, 354, 361, 386, 396, 475, 691, 695
ApeKI GCWGC 1 cut(s) 568
AspLEI GCGC 3 cut(s) 290, 292, 616
AspS9I GGNCC 4 cut(s) 58, 336, 396, 421
AsuC2I CCSGG 1 cut(s) 390
AsuHPI GGTGA 4 cut(s) 295, 396, 683, 799
AvaII GGWCC 1 cut(s) 421
BaeI ACNNNNGTAYC 2 cut(s) 239, 272
BalI TGGCCA 1 cut(s) 477
BbvI GCAGC 1 cut(s) 555
BccI CCATC 8 cut(s) 38, 461, 534, 549, 576, 662, 730, 737
BciT130I CCWGG 2 cut(s) 56, 699
BcnI CCSGG 1 cut(s) 390
BfaI CTAG 1 cut(s) 251
BfrI CTTAAG 1 cut(s) 446
BglII AGATCT 1 cut(s) 592
BisI GCNGC 4 cut(s) 335, 386, 569, 774
BlsI GCNGC 4 cut(s) 336, 387, 570, 775
BmcAI AGTACT 1 cut(s) 137
Bme1390I CCNGG 3 cut(s) 56, 390, 699
Bme18I GGWCC 1 cut(s) 421
BmgT120I GGNCC 4 cut(s) 58, 336, 396, 421
BmiI GGNNCC 1 cut(s) 422
BmrFI CCNGG 3 cut(s) 56, 390, 699
BmrI ACTGGG 1 cut(s) 188
BmsI GCATC 1 cut(s) 114
BmuI ACTGGG 1 cut(s) 188
BpmI CTGGAG 1 cut(s) 80
Bpu10I CCTNAGC 1 cut(s) 213
BpuMI CCSGG 1 cut(s) 390
Bsa29I ATCGAT 1 cut(s) 440
BsaJI CCNNGG 3 cut(s) 55, 577, 618
Bsc4I CCNNNNNNNGG 3 cut(s) 55, 583, 721
Bse118I RCCGGY 1 cut(s) 693
Bse1I ACTGG 3 cut(s) 97, 133, 183
BseBI CCWGG 2 cut(s) 56, 699
BseCI ATCGAT 1 cut(s) 440
BseDI CCNNGG 3 cut(s) 55, 577, 618
BseGI GGATG 6 cut(s) 51, 472, 545, 560, 587, 748
BseLI CCNNNNNNNGG 3 cut(s) 55, 583, 721
BseMII CTCAG 5 cut(s) 227, 333, 501, 610, 797
BseNI ACTGG 3 cut(s) 97, 133, 183
BsePI GCGCGC 1 cut(s) 288
BseRI GAGGAG 1 cut(s) 251
BseX3I CGGCCG 1 cut(s) 386
BseXI GCAGC 1 cut(s) 555
BsgI GTGCAG 1 cut(s) 651
Bsh1236I CGCG 1 cut(s) 290
Bsh1285I CGRYCG 2 cut(s) 389, 440
BshFI GGCC 9 cut(s) 60, 337, 356, 363, 388, 398, 477, 693, 697
BshVI ATCGAT 1 cut(s) 440
BsiEI CGRYCG 2 cut(s) 389, 440
BsiSI CCGG 2 cut(s) 389, 694
BslI CCNNNNNNNGG 3 cut(s) 55, 583, 721
BsnI GGCC 9 cut(s) 60, 337, 356, 363, 388, 398, 477, 693, 697
Bsp143I GATC 7 cut(s) 4, 169, 437, 592, 622, 634, 677
BspACI CCGC 8 cut(s) 11, 334, 379, 385, 471, 528, 762, 773
BspANI GGCC 9 cut(s) 60, 337, 356, 363, 388, 398, 477, 693, 697
BspCNI CTCAG 5 cut(s) 226, 334, 502, 609, 796
BspDI ATCGAT 1 cut(s) 440
BspFNI CGCG 1 cut(s) 290
BspLI GGNNCC 1 cut(s) 422
BspPI GGATC 3 cut(s) 12, 177, 630
BspTI CTTAAG 1 cut(s) 446
BsrFI RCCGGY 1 cut(s) 693
BsrI ACTGG 3 cut(s) 97, 133, 183
BssAI RCCGGY 1 cut(s) 693
BssECI CCNNGG 3 cut(s) 55, 577, 618
BssHII GCGCGC 1 cut(s) 288
BssMI GATC 7 cut(s) 4, 169, 437, 592, 622, 634, 677
BssT1I CCWWGG 2 cut(s) 577, 618
Bst2UI CCWGG 2 cut(s) 56, 699
Bst6I CTCTTC 1 cut(s) 406
BstAFI CTTAAG 1 cut(s) 446
BstAPI GCANNNNNTGC 1 cut(s) 124
BstC8I GCNNGC 3 cut(s) 290, 695, 728
BstDEI CTNAG 6 cut(s) 103, 213, 342, 510, 596, 783
BstF5I GGATG 6 cut(s) 51, 472, 545, 560, 587, 748
BstFNI CGCG 1 cut(s) 290
BstHHI GCGC 3 cut(s) 290, 292, 616
BstKTI GATC 7 cut(s) 7, 172, 440, 595, 625, 637, 680
BstMBI GATC 7 cut(s) 4, 169, 437, 592, 622, 634, 677
BstMCI CGRYCG 2 cut(s) 389, 440
BstMWI GCNNNNNNNGC 4 cut(s) 124, 287, 385, 690
BstNI CCWGG 2 cut(s) 56, 699
BstNSI RCATGY 1 cut(s) 204
BstSCI CCNGG 3 cut(s) 54, 388, 697
BstUI CGCG 1 cut(s) 290
BstV1I GCAGC 1 cut(s) 555
BstX2I RGATCY 3 cut(s) 4, 592, 622
BstYI RGATCY 3 cut(s) 4, 592, 622
BstZI CGGCCG 1 cut(s) 386
Bsu15I ATCGAT 1 cut(s) 440
BsuRI GGCC 9 cut(s) 60, 337, 356, 363, 388, 398, 477, 693, 697
BsuTUI ATCGAT 1 cut(s) 440
BtsCI GGATG 6 cut(s) 51, 472, 545, 560, 587, 748
BtsIMutI CAGTG 1 cut(s) 176
Cac8I GCNNGC 3 cut(s) 290, 695, 728
CfoI GCGC 3 cut(s) 290, 292, 616
Cfr10I RCCGGY 1 cut(s) 693
Cfr13I GGNCC 4 cut(s) 58, 336, 396, 421
ClaI ATCGAT 1 cut(s) 440
CseI GACGC 1 cut(s) 270
Csp6I GTAC 2 cut(s) 136, 374
CviAII CATG 5 cut(s) 201, 232, 285, 417, 479
CviQI GTAC 2 cut(s) 136, 374
DdeI CTNAG 6 cut(s) 103, 213, 342, 510, 596, 783
DpnI GATC 7 cut(s) 6, 171, 439, 594, 624, 636, 679
DpnII GATC 7 cut(s) 4, 169, 437, 592, 622, 634, 677
EaeI YGGCCR 3 cut(s) 386, 475, 691
EagI CGGCCG 1 cut(s) 386
Eam1104I CTCTTC 1 cut(s) 406
EarI CTCTTC 1 cut(s) 406
EclXI CGGCCG 1 cut(s) 386
Eco130I CCWWGG 2 cut(s) 577, 618
Eco47I GGWCC 1 cut(s) 421
Eco52I CGGCCG 1 cut(s) 386
EcoO109I RGGNCCY 2 cut(s) 396, 421
EcoRII CCWGG 2 cut(s) 54, 697
EcoT14I CCWWGG 2 cut(s) 577, 618
ErhI CCWWGG 2 cut(s) 577, 618
FaeI CATG 5 cut(s) 204, 235, 288, 420, 482
FaiI YATR 7 cut(s) 202, 206, 233, 286, 418, 480, 690
FatI CATG 5 cut(s) 200, 231, 284, 416, 478
FauI CCCGC 1 cut(s) 372
Fnu4HI GCNGC 4 cut(s) 335, 386, 569, 774
FokI GGATG 6 cut(s) 38, 479, 552, 567, 594, 755
FseI GGCCGGCC 1 cut(s) 697
Fsp4HI GCNGC 4 cut(s) 335, 386, 569, 774
FspBI CTAG 1 cut(s) 251
GlaI GCGC 3 cut(s) 289, 291, 615
GluI GCNGC 4 cut(s) 335, 386, 569, 774
GsuI CTGGAG 1 cut(s) 80
HaeIII GGCC 9 cut(s) 60, 337, 356, 363, 388, 398, 477, 693, 697
HapII CCGG 2 cut(s) 389, 694
HgaI GACGC 1 cut(s) 270
HhaI GCGC 3 cut(s) 290, 292, 616
Hin1II CATG 5 cut(s) 204, 235, 288, 420, 482
Hin6I GCGC 3 cut(s) 288, 290, 614
HinP1I GCGC 3 cut(s) 288, 290, 614
HincII GTYRAC 1 cut(s) 487
HindII GTYRAC 1 cut(s) 487
HinfI GANTC 5 cut(s) 26, 91, 241, 442, 533
HpaI GTTAAC 1 cut(s) 487
HpaII CCGG 2 cut(s) 389, 694
HphI GGTGA 4 cut(s) 295, 396, 683, 799
Hpy166II GTNNAC 2 cut(s) 72, 487
Hpy188I TCNGA 5 cut(s) 246, 343, 511, 599, 639
Hpy188III TCNNGA 2 cut(s) 464, 537
Hpy8I GTNNAC 2 cut(s) 72, 487
Hpy99I CGWCG 1 cut(s) 26
HpyAV CCTTC 3 cut(s) 160, 316, 331
HpyCH4IV ACGT 1 cut(s) 277
HpyCH4V TGCA 2 cut(s) 127, 632
HpyF10VI GCNNNNNNNGC 4 cut(s) 124, 287, 385, 690
HpyF3I CTNAG 6 cut(s) 103, 213, 342, 510, 596, 783
HpySE526I ACGT 1 cut(s) 277
Hsp92II CATG 5 cut(s) 204, 235, 288, 420, 482
HspAI GCGC 3 cut(s) 288, 290, 614
KroI GCCGGC 1 cut(s) 693
KroNI GCCGGC 1 cut(s) 695
KspAI GTTAAC 1 cut(s) 487
Kzo9I GATC 7 cut(s) 4, 169, 437, 592, 622, 634, 677
Lsp1109I GCAGC 1 cut(s) 555
LweI GCATC 1 cut(s) 114
MaeI CTAG 1 cut(s) 251
MaeII ACGT 1 cut(s) 277
MaeIII GTNAC 3 cut(s) 671, 710, 755
MalI GATC 7 cut(s) 6, 171, 439, 594, 624, 636, 679
MboI GATC 7 cut(s) 4, 169, 437, 592, 622, 634, 677
MboII GAAGA 5 cut(s) 309, 393, 596, 670, 802
MflI RGATCY 3 cut(s) 4, 592, 622
MlsI TGGCCA 1 cut(s) 477
MluCI AATT 4 cut(s) 42, 86, 155, 496
MluNI TGGCCA 1 cut(s) 477
MlyI GAGTC 1 cut(s) 542
Mox20I TGGCCA 1 cut(s) 477
MroNI GCCGGC 1 cut(s) 693
MscI TGGCCA 1 cut(s) 477
MseI TTAA 4 cut(s) 189, 447, 486, 549
MslI CAYNNNNRTG 1 cut(s) 181
Msp20I TGGCCA 1 cut(s) 477
MspA1I CMGCKG 1 cut(s) 762
MspCI CTTAAG 1 cut(s) 446
MspI CCGG 2 cut(s) 389, 694
MspR9I CCNGG 3 cut(s) 56, 390, 699
MvaI CCWGG 2 cut(s) 56, 699
MvnI CGCG 1 cut(s) 290
MwoI GCNNNNNNNGC 4 cut(s) 124, 287, 385, 690
NaeI GCCGGC 1 cut(s) 695
NciI CCSGG 1 cut(s) 390
NdeII GATC 7 cut(s) 4, 169, 437, 592, 622, 634, 677
NgoMIV GCCGGC 1 cut(s) 693
NlaIII CATG 5 cut(s) 204, 235, 288, 420, 482
NlaIV GGNNCC 1 cut(s) 422
NmuCI GTSAC 3 cut(s) 671, 710, 755
NspI RCATGY 1 cut(s) 204
OliI CACNNNNGTG 1 cut(s) 181
PauI GCGCGC 1 cut(s) 288
PdiI GCCGGC 1 cut(s) 695
PfeI GAWTC 4 cut(s) 26, 91, 241, 442
PflMI CCANNNNNTGG 1 cut(s) 55
PkrI GCNGC 4 cut(s) 336, 387, 570, 775
Ple19I CGATCG 1 cut(s) 440
PleI GAGTC 1 cut(s) 541
PpsI GAGTC 1 cut(s) 541
PpuMI RGGWCCY 1 cut(s) 421
Psp5II RGGWCCY 1 cut(s) 421
Psp6I CCWGG 2 cut(s) 54, 697
PspGI CCWGG 2 cut(s) 54, 697
PspN4I GGNNCC 1 cut(s) 422
PspPI GGNCC 4 cut(s) 58, 336, 396, 421
PspPPI RGGWCCY 1 cut(s) 421
PsuI RGATCY 3 cut(s) 4, 592, 622
PteI GCGCGC 1 cut(s) 288
PvuI CGATCG 1 cut(s) 440
RigI GGCCGGCC 1 cut(s) 697
RsaI GTAC 2 cut(s) 137, 375
RsaNI GTAC 2 cut(s) 136, 374
RseI CAYNNNNRTG 1 cut(s) 181
SaqAI TTAA 4 cut(s) 189, 447, 486, 549
SatI GCNGC 4 cut(s) 335, 386, 569, 774
Sau3AI GATC 7 cut(s) 4, 169, 437, 592, 622, 634, 677
Sau96I GGNCC 4 cut(s) 58, 336, 396, 421
ScaI AGTACT 1 cut(s) 137
SchI GAGTC 1 cut(s) 542
ScrFI CCNGG 3 cut(s) 56, 390, 699
SetI ASST 7 cut(s) 195, 280, 308, 486, 686, 717, 789
SfaNI GCATC 1 cut(s) 114
SinI GGWCC 1 cut(s) 421
SmiMI CAYNNNNRTG 1 cut(s) 181
SmlI CTYRAG 1 cut(s) 446
SmoI CTYRAG 1 cut(s) 446
Sse9I AATT 4 cut(s) 42, 86, 155, 496
SsiI CCGC 8 cut(s) 11, 334, 379, 385, 471, 528, 762, 773
SspMI CTAG 1 cut(s) 251
StyD4I CCNGG 3 cut(s) 54, 388, 697
StyI CCWWGG 2 cut(s) 577, 618
TaiI ACGT 1 cut(s) 280
TaqI TCGA 4 cut(s) 21, 195, 440, 734
TasI AATT 4 cut(s) 42, 86, 155, 496
TatI WGTACW 1 cut(s) 135
TauI GCSGC 3 cut(s) 337, 388, 776
TfiI GAWTC 4 cut(s) 26, 91, 241, 442
Tru1I TTAA 4 cut(s) 189, 447, 486, 549
Tru9I TTAA 4 cut(s) 189, 447, 486, 549
TscAI CASTG 1 cut(s) 183
TseFI GTSAC 3 cut(s) 671, 710, 755
TseI GCWGC 1 cut(s) 568
Tsp45I GTSAC 3 cut(s) 671, 710, 755
TspDTI ATGAA 3 cut(s) 220, 221, 358
TspGWI ACGGA 1 cut(s) 444
TspRI CASTG 1 cut(s) 183
Van91I CCANNNNNTGG 1 cut(s) 55
Vha464I CTTAAG 1 cut(s) 446
VpaK11BI GGWCC 1 cut(s) 421
XceI RCATGY 1 cut(s) 204
XcmI CCANNNNNNNNNTGG 1 cut(s) 414
XspI CTAG 1 cut(s) 251
ZrmI AGTACT 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.