RLG00000001294

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0030436
Physical Location & Seq
Forward (+)
13637373 .. 13637948
576 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001294

Sequence Viewer

Length: 435 bp
ATGGTGATAAAGAGGGGGGCAAACTGGCTGAGAAATCGATACAGCTTGAACCCGAGAATAGTGGAGTCAGATGTTAATTTGCTTTCAACTCTACATGCAAAGGAGCAAAAATGGGAAGATCTCAAAAGTGTGAGGAAGATGATGAGAGACAGCAGCATGAAGAAATTTCCCGTTCTTGTTCTGCATGATATGCACGACAATTCAAAGGTAGAACTTCTTCACCATCATAGTGAGAGGATAGCGATTGCATTTGCAATGATAAGTATGCCTGCCGGGAAGCCAATCATTGTGAAGAAAAATTTAAGGGTGTGCTTGGATTGCCATTCTGCAATCAAGTACATCTCCTTGGTTGTTGGAAGAAAGATTATAGTTAGGGACAATACTCGGTCCCACCATTTCGCAGATGGGTTGTGTTCGTGTGGAGATTGCTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

145

Amino Acids

16.6

Weight (kDa)

9.68

Isoelectric Point (pI)

36.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DYW_deaminase PF14432 59 - 144 5.2e-35 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030436)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0233131
rosa_laevigata RLG00000001294

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 164, 298
AfaI GTAC 1 cut(s) 338
AgsI TTSAA 3 cut(s) 49, 87, 204
AluBI AGCT 1 cut(s) 45
AluI AGCT 1 cut(s) 45
Alw26I GTCTC 1 cut(s) 141
Ama87I CYCGRG 1 cut(s) 52
ApeKI GCWGC 1 cut(s) 153
ApoI RAATTY 2 cut(s) 164, 298
Asp700I GAANNNNTTC 1 cut(s) 216
AspS9I GGNCC 1 cut(s) 387
AsuC2I CCSGG 1 cut(s) 274
AsuHPI GGTGA 2 cut(s) 16, 212
AvaI CYCGRG 1 cut(s) 52
AvaII GGWCC 1 cut(s) 387
BarI GAAGNNNNNNTAC 2 cut(s) 201, 233
BbvI GCAGC 1 cut(s) 165
BccI CCATC 2 cut(s) 231, 398
BcnI CCSGG 1 cut(s) 274
BcoDI GTCTC 1 cut(s) 141
BglII AGATCT 1 cut(s) 118
BisI GCNGC 1 cut(s) 154
BlsI GCNGC 1 cut(s) 155
Bme1390I CCNGG 1 cut(s) 274
Bme18I GGWCC 1 cut(s) 387
BmeT110I CYCGRG 1 cut(s) 52
BmgT120I GGNCC 1 cut(s) 387
BmiI GGNNCC 1 cut(s) 389
BmrFI CCNGG 1 cut(s) 274
BpuMI CCSGG 1 cut(s) 274
Bsa29I ATCGAT 1 cut(s) 37
BsaJI CCNNGG 1 cut(s) 345
Bse1I ACTGG 1 cut(s) 29
Bse3DI GCAATG 1 cut(s) 261
BseCI ATCGAT 1 cut(s) 37
BseDI CCNNGG 1 cut(s) 345
BseMI GCAATG 1 cut(s) 261
BseMII CTCAG 1 cut(s) 20
BseNI ACTGG 1 cut(s) 29
BseXI GCAGC 1 cut(s) 165
BshVI ATCGAT 1 cut(s) 37
BsiHKCI CYCGRG 1 cut(s) 52
BsiSI CCGG 1 cut(s) 273
BslFI GGGAC 2 cut(s) 373, 389
BsmAI GTCTC 1 cut(s) 141
BsmFI GGGAC 2 cut(s) 373, 389
BsoBI CYCGRG 1 cut(s) 52
Bsp143I GATC 1 cut(s) 118
BspCNI CTCAG 1 cut(s) 21
BspDI ATCGAT 1 cut(s) 37
BspLI GGNNCC 1 cut(s) 389
BsrDI GCAATG 1 cut(s) 261
BsrI ACTGG 1 cut(s) 29
BssECI CCNNGG 1 cut(s) 345
BssMI GATC 1 cut(s) 118
BssT1I CCWWGG 1 cut(s) 345
BstAPI GCANNNNNTGC 1 cut(s) 190
BstC8I GCNNGC 1 cut(s) 270
BstDEI CTNAG 1 cut(s) 29
BstKTI GATC 1 cut(s) 121
BstMAI GTCTC 1 cut(s) 141
BstMBI GATC 1 cut(s) 118
BstMWI GCNNNNNNNGC 2 cut(s) 190, 318
BstNSI RCATGY 1 cut(s) 98
BstSCI CCNGG 1 cut(s) 272
BstV1I GCAGC 1 cut(s) 165
BstX2I RGATCY 1 cut(s) 118
BstYI RGATCY 1 cut(s) 118
Bsu15I ATCGAT 1 cut(s) 37
BsuTUI ATCGAT 1 cut(s) 37
Cac8I GCNNGC 1 cut(s) 270
Cfr13I GGNCC 1 cut(s) 387
ClaI ATCGAT 1 cut(s) 37
Csp6I GTAC 1 cut(s) 337
CviAII CATG 3 cut(s) 95, 157, 185
CviJI RGCY 3 cut(s) 28, 45, 280
CviKI_1 RGCY 3 cut(s) 28, 45, 280
CviQI GTAC 1 cut(s) 337
DdeI CTNAG 1 cut(s) 29
DpnI GATC 1 cut(s) 120
DpnII GATC 1 cut(s) 118
Eco130I CCWWGG 1 cut(s) 345
Eco47I GGWCC 1 cut(s) 387
Eco88I CYCGRG 1 cut(s) 52
EcoT14I CCWWGG 1 cut(s) 345
ErhI CCWWGG 1 cut(s) 345
FaeI CATG 3 cut(s) 98, 160, 188
FaiI YATR 7 cut(s) 96, 158, 186, 191, 228, 266, 368
FaqI GGGAC 2 cut(s) 373, 389
FatI CATG 3 cut(s) 94, 156, 184
Fnu4HI GCNGC 1 cut(s) 154
Fsp4HI GCNGC 1 cut(s) 154
GluI GCNGC 1 cut(s) 154
HapII CCGG 1 cut(s) 273
Hin1II CATG 3 cut(s) 98, 160, 188
HinfI GANTC 1 cut(s) 65
HpaII CCGG 1 cut(s) 273
HphI GGTGA 2 cut(s) 16, 212
Hpy188I TCNGA 1 cut(s) 70
HpyCH4V TGCA 6 cut(s) 98, 184, 193, 248, 254, 329
HpyF10VI GCNNNNNNNGC 2 cut(s) 190, 318
HpyF3I CTNAG 1 cut(s) 29
Hsp92II CATG 3 cut(s) 98, 160, 188
Kzo9I GATC 1 cut(s) 118
LmnI GCTCC 1 cut(s) 103
LpnPI CCDG 4 cut(s) 10, 282, 286, 415
Lsp1109I GCAGC 1 cut(s) 165
MalI GATC 1 cut(s) 120
MboI GATC 1 cut(s) 118
MboII GAAGA 6 cut(s) 128, 148, 172, 209, 304, 369
MflI RGATCY 1 cut(s) 118
MluCI AATT 4 cut(s) 76, 164, 199, 298
MlyI GAGTC 1 cut(s) 74
MmeI TCCRAC 1 cut(s) 334
MnlI CCTC 3 cut(s) 6, 126, 228
MroXI GAANNNNTTC 1 cut(s) 216
MseI TTAA 2 cut(s) 75, 302
MslI CAYNNNNRTG 1 cut(s) 228
MspI CCGG 1 cut(s) 273
MspR9I CCNGG 1 cut(s) 274
MwoI GCNNNNNNNGC 2 cut(s) 190, 318
NciI CCSGG 1 cut(s) 274
NdeII GATC 1 cut(s) 118
NlaIII CATG 3 cut(s) 98, 160, 188
NlaIV GGNNCC 1 cut(s) 389
NspI RCATGY 1 cut(s) 98
PdmI GAANNNNTTC 1 cut(s) 216
PkrI GCNGC 1 cut(s) 155
PleI GAGTC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 73
PspN4I GGNNCC 1 cut(s) 389
PspPI GGNCC 1 cut(s) 387
PsuI RGATCY 1 cut(s) 118
RsaI GTAC 1 cut(s) 338
RsaNI GTAC 1 cut(s) 337
RseI CAYNNNNRTG 1 cut(s) 228
SaqAI TTAA 2 cut(s) 75, 302
SatI GCNGC 1 cut(s) 154
Sau3AI GATC 1 cut(s) 118
Sau96I GGNCC 1 cut(s) 387
SchI GAGTC 1 cut(s) 74
ScrFI CCNGG 1 cut(s) 274
SetI ASST 2 cut(s) 47, 210
SinI GGWCC 1 cut(s) 387
SmiMI CAYNNNNRTG 1 cut(s) 228
Sse9I AATT 4 cut(s) 76, 164, 199, 298
StyD4I CCNGG 1 cut(s) 272
StyI CCWWGG 1 cut(s) 345
TaqI TCGA 1 cut(s) 37
TaqII GACCGA 1 cut(s) 375
TasI AATT 4 cut(s) 76, 164, 199, 298
TatI WGTACW 1 cut(s) 336
Tru1I TTAA 2 cut(s) 75, 302
Tru9I TTAA 2 cut(s) 75, 302
TseI GCWGC 1 cut(s) 153
TspDTI ATGAA 1 cut(s) 173
VpaK11BI GGWCC 1 cut(s) 387
XapI RAATTY 2 cut(s) 164, 298
XceI RCATGY 1 cut(s) 98
XcmI CCANNNNNNNNNTGG 1 cut(s) 401
XmnI GAANNNNTTC 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.