RLG00000002747
ERF Family

Belongs to the small GTPase superfamily. Arf family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
39071937 .. 39072284
348 bp
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UTR
Exon/CDS
Intron
RLM00000002747

Sequence Viewer

Length: 348 bp
ATGATTGTGGTAGTTGGGTTGGACAATGGTGGGAAGACGACTACCCTTTACAAATTACACTTTGGAGAGGTTGTGACTATGAACCTGACTGCAGGCAGAAATGTCAAACAACTTGTTGACAAGAACACCCACTTTGAGGTATGGGATCTTAGTGGACAAGATAGACTAATGGCTTTATGGGCAACATACTACTGTGGAACTTATGCTATCATTGTGGTAATAGACAACACAGAAAGTGCCATAATTTTCATTATGAAGGACGAACTCTTTGGGTTGCTTGGGCTTGAGGATCTTCAACATTCAGTTGTATTGTTTTTGCTAATAAACAAGATCTCAAGGGTGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

116

Amino Acids

12.92

Weight (kDa)

5.46

Isoelectric Point (pI)

19.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 2 - 111 3.4e-28 ADP-ribosylation factor family
Roc PF08477 2 - 80 1.8e-08 Ras of Complex, Roc, domain of DAPkinase
Ras PF00071 2 - 79 5.9e-06 Ras family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0022822)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0214431
rosa_laevigata RLG00000002747
rosa_samantha Rh7AG280800 Rh7CG300300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 340
AclWI GGATC 2 cut(s) 153, 297
AfiI CCNNNNNNNGG 1 cut(s) 136
AgsI TTSAA 1 cut(s) 296
AlwI GGATC 2 cut(s) 153, 297
ArsI GACNNNNNNTTYG 2 cut(s) 251, 283
BanI GGYRCC 1 cut(s) 340
BbsI GAAGAC 1 cut(s) 41
BfmI CTRYAG 1 cut(s) 90
BglII AGATCT 1 cut(s) 330
BmiI GGNNCC 1 cut(s) 342
BpiI GAAGAC 1 cut(s) 41
BpuEI CTTGAG 2 cut(s) 305, 319
BsaXI ACNNNNNCTCC 2 cut(s) 57, 87
Bsc4I CCNNNNNNNGG 1 cut(s) 136
BseLI CCNNNNNNNGG 1 cut(s) 136
BshNI GGYRCC 1 cut(s) 340
BslI CCNNNNNNNGG 1 cut(s) 136
Bsp143I GATC 3 cut(s) 145, 289, 330
BspLI GGNNCC 1 cut(s) 342
BspMAI CTGCAG 1 cut(s) 94
BspPI GGATC 2 cut(s) 153, 297
BspT107I GGYRCC 1 cut(s) 340
BssMI GATC 3 cut(s) 145, 289, 330
Bst4CI ACNGT 1 cut(s) 194
BstC8I GCNNGC 1 cut(s) 94
BstDEI CTNAG 1 cut(s) 149
BstKTI GATC 3 cut(s) 148, 292, 333
BstMBI GATC 3 cut(s) 145, 289, 330
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstSFI CTRYAG 1 cut(s) 90
BstV2I GAAGAC 1 cut(s) 41
BstX2I RGATCY 3 cut(s) 145, 289, 330
BstYI RGATCY 3 cut(s) 145, 289, 330
Cac8I GCNNGC 1 cut(s) 94
CviAII CATG 1 cut(s) 345
CviJI RGCY 2 cut(s) 173, 283
CviKI_1 RGCY 2 cut(s) 173, 283
DdeI CTNAG 1 cut(s) 149
DpnI GATC 3 cut(s) 147, 291, 332
DpnII GATC 3 cut(s) 145, 289, 330
FaeI CATG 1 cut(s) 348
FaiI YATR 8 cut(s) 80, 142, 178, 187, 204, 242, 254, 346
FatI CATG 1 cut(s) 344
Hin1II CATG 1 cut(s) 348
HincII GTYRAC 1 cut(s) 118
HindII GTYRAC 1 cut(s) 118
Hpy166II GTNNAC 2 cut(s) 118, 155
Hpy8I GTNNAC 2 cut(s) 118, 155
HpyAV CCTTC 1 cut(s) 250
HpyCH4III ACNGT 1 cut(s) 194
HpyCH4V TGCA 1 cut(s) 92
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
HpyF3I CTNAG 1 cut(s) 149
Hsp92II CATG 1 cut(s) 348
Kzo9I GATC 3 cut(s) 145, 289, 330
LpnPI CCDG 2 cut(s) 78, 98
MaeIII GTNAC 1 cut(s) 73
MalI GATC 3 cut(s) 147, 291, 332
MboI GATC 3 cut(s) 145, 289, 330
MboII GAAGA 2 cut(s) 46, 284
MflI RGATCY 3 cut(s) 145, 289, 330
MluCI AATT 2 cut(s) 53, 243
MnlI CCTC 3 cut(s) 61, 130, 280
MwoI GCNNNNNNNGC 1 cut(s) 179
NdeII GATC 3 cut(s) 145, 289, 330
NlaIII CATG 1 cut(s) 348
NlaIV GGNNCC 1 cut(s) 342
NmuCI GTSAC 1 cut(s) 73
PspN4I GGNNCC 1 cut(s) 342
PstI CTGCAG 1 cut(s) 94
PsuI RGATCY 3 cut(s) 145, 289, 330
Sau3AI GATC 3 cut(s) 145, 289, 330
SetI ASST 3 cut(s) 72, 87, 141
SfcI CTRYAG 1 cut(s) 90
SgeI CNNG 8 cut(s) 97, 105, 125, 133, 170, 290, 296, 340
SmlI CTYRAG 2 cut(s) 284, 334
SmoI CTYRAG 2 cut(s) 284, 334
Sse9I AATT 2 cut(s) 53, 243
TaaI ACNGT 1 cut(s) 194
TasI AATT 2 cut(s) 53, 243
TseFI GTSAC 1 cut(s) 73
Tsp45I GTSAC 1 cut(s) 73
TspDTI ATGAA 3 cut(s) 95, 238, 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.