Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0025215

Physical Location & Seq

Genomic Coordinates Reverse (-)

40965367 .. 40966040

Gene Structure 674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002872

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGCTTTAGCTGCAGCGGCTCCTCCTCCTCATCATCGTCTTCTTCGAATTTGTTGTCATCGGATTCTCACCCACCGCCCCTCACTCCACCTCCCTCACCCTCTACAACCCCCAAAAGCAATTCTCCCCCACTTCCACCATCTCCTTAAACGACGTCGTCACCTCTGCCTCTTTTTCTGCGATGACCTCCTCATCACCTCAGCCAATATCTCCGGCCTCGTCCAAGTCTTCGATGTTAGAACCCAAACCCCTCTCCAGAGACTCCAAACCCACAATGGCCCTGTTCGCAATCCCCGAGAAGCCCCATTTGGTCTCCACATAGTCGTCAAGTACTGGAAGATCGTCGACGAGACCACGATTTGCGACTTAGAGGTAAGGCTGACCAATCTCAGAGATTACAGCAATGACGAACTTGTTCTTCTGCTGGTGAAGGCCACTATGCGAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0031461 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0070013 GO:0071704 GO:0071840 GO:0080008 GO:0090304 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

UTP15_C WD40

Protein Analysis

150

Amino Acids

17.22

Weight (kDa)

9.59

Isoelectric Point (pI)

54.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025215)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000002872
rosa_multiflora	Rmu_sc0000898.1_g000014
rosa_roxburghii	Rroxscaffold_1G00060520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	157
AccI	GTMKAC	1 cut(s)	345
AciI	CCGC	2 cut(s)	17, 76
AcsI	RAATTY	1 cut(s)	48
AcyI	GRCGYC	1 cut(s)	154
AfaI	GTAC	1 cut(s)	332
AjuI	GAANNNNNNNTTGG	2 cut(s)	291, 323
AluBI	AGCT	1 cut(s)	11
AluI	AGCT	1 cut(s)	11
Alw26I	GTCTC	3 cut(s)	253, 317, 344
Ama87I	CYCGRG	1 cut(s)	294
AoxI	GGCC	3 cut(s)	214, 277, 432
ApeKI	GCWGC	2 cut(s)	11, 14
ApoI	RAATTY	1 cut(s)	48
ArsI	GACNNNNNNTTYG	2 cut(s)	40, 72
Asp700I	GAANNNNTTC	1 cut(s)	414
AspS9I	GGNCC	1 cut(s)	278
AsuHPI	GGTGA	5 cut(s)	61, 89, 152, 187, 439
AsuII	TTCGAA	1 cut(s)	46
AvaI	CYCGRG	1 cut(s)	294
BbsI	GAAGAC	2 cut(s)	32, 220
BbvCI	CCTCAGC	1 cut(s)	199
BbvI	GCAGC	1 cut(s)	26
BccI	CCATC	1 cut(s)	147
BcoDI	GTCTC	3 cut(s)	253, 317, 344
BfmI	CTRYAG	1 cut(s)	12
BisI	GCNGC	3 cut(s)	12, 15, 18
BlsI	GCNGC	3 cut(s)	13, 16, 19
BmcAI	AGTACT	1 cut(s)	332
BmeT110I	CYCGRG	1 cut(s)	294
BmgT120I	GGNCC	1 cut(s)	278
BmiI	GGNNCC	1 cut(s)	21
BpiI	GAAGAC	2 cut(s)	32, 220
BpmI	CTGGAG	1 cut(s)	239
Bpu10I	CCTNAGC	1 cut(s)	199
Bpu14I	TTCGAA	1 cut(s)	46
BsaHI	GRCGYC	1 cut(s)	154
BsaI	GGTCTC	2 cut(s)	317, 344
BsaXI	ACNNNNNCTCC	2 cut(s)	75, 105
Bse1I	ACTGG	1 cut(s)	338
Bse3DI	GCAATG	1 cut(s)	409
BseMI	GCAATG	1 cut(s)	409
BseMII	CTCAG	2 cut(s)	213, 403
BseNI	ACTGG	1 cut(s)	338
BseRI	GAGGAG	4 cut(s)	12, 15, 18, 179
BseXI	GCAGC	1 cut(s)	26
BshFI	GGCC	3 cut(s)	216, 279, 434
BsiHKCI	CYCGRG	1 cut(s)	294
BsiSI	CCGG	1 cut(s)	213
BsmAI	GTCTC	3 cut(s)	253, 317, 344
BsnI	GGCC	3 cut(s)	216, 279, 434
Bso31I	GGTCTC	2 cut(s)	317, 344
BsoBI	CYCGRG	1 cut(s)	294
Bsp119I	TTCGAA	1 cut(s)	46
Bsp143I	GATC	1 cut(s)	339
BspACI	CCGC	2 cut(s)	17, 76
BspANI	GGCC	3 cut(s)	216, 279, 434
BspCNI	CTCAG	2 cut(s)	212, 402
BspLI	GGNNCC	1 cut(s)	21
BspMAI	CTGCAG	1 cut(s)	16
BspT104I	TTCGAA	1 cut(s)	46
BspTNI	GGTCTC	2 cut(s)	317, 344
BsrDI	GCAATG	1 cut(s)	409
BsrI	ACTGG	1 cut(s)	338
BssMI	GATC	1 cut(s)	339
BssNI	GRCGYC	1 cut(s)	154
BstACI	GRCGYC	1 cut(s)	154
BstBI	TTCGAA	1 cut(s)	46
BstDEI	CTNAG	3 cut(s)	199, 367, 389
BstKTI	GATC	1 cut(s)	342
BstMAI	GTCTC	3 cut(s)	253, 317, 344
BstMBI	GATC	1 cut(s)	339
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 17, 285
BstSFI	CTRYAG	1 cut(s)	12
BstV1I	GCAGC	1 cut(s)	26
BstV2I	GAAGAC	2 cut(s)	32, 220
BsuRI	GGCC	3 cut(s)	216, 279, 434
BtgZI	GCGATG	1 cut(s)	195
Cfr13I	GGNCC	1 cut(s)	278
Csp6I	GTAC	1 cut(s)	331
CviJI	RGCY	9 cut(s)	5, 11, 20, 203, 216, 279, 302, 379, 434
CviKI_1	RGCY	9 cut(s)	5, 11, 20, 203, 216, 279, 302, 379, 434
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	3 cut(s)	199, 367, 389
DpnI	GATC	1 cut(s)	341
DpnII	GATC	1 cut(s)	339
Eco31I	GGTCTC	2 cut(s)	317, 344
Eco88I	CYCGRG	1 cut(s)	294
FaiI	YATR	2 cut(s)	320, 440
FblI	GTMKAC	1 cut(s)	345
Fnu4HI	GCNGC	3 cut(s)	12, 15, 18
Fsp4HI	GCNGC	3 cut(s)	12, 15, 18
GluI	GCNGC	3 cut(s)	12, 15, 18
GsuI	CTGGAG	1 cut(s)	239
HaeIII	GGCC	3 cut(s)	216, 279, 434
HapII	CCGG	1 cut(s)	213
Hin1I	GRCGYC	1 cut(s)	154
HincII	GTYRAC	1 cut(s)	346
HindII	GTYRAC	1 cut(s)	346
HinfI	GANTC	2 cut(s)	64, 261
HpaII	CCGG	1 cut(s)	213
HphI	GGTGA	5 cut(s)	61, 89, 152, 187, 439
Hpy166II	GTNNAC	1 cut(s)	346
Hpy188I	TCNGA	2 cut(s)	63, 392
Hpy188III	TCNNGA	1 cut(s)	256
Hpy8I	GTNNAC	1 cut(s)	346
Hpy99I	CGWCG	4 cut(s)	156, 159, 347, 350
HpyAV	CCTTC	1 cut(s)	424
HpyCH4IV	ACGT	1 cut(s)	154
HpyCH4V	TGCA	1 cut(s)	14
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 17, 285
HpyF3I	CTNAG	3 cut(s)	199, 367, 389
HpySE526I	ACGT	1 cut(s)	154
Hsp92I	GRCGYC	1 cut(s)	154
Kzo9I	GATC	1 cut(s)	339
LmnI	GCTCC	1 cut(s)	25
LpnPI	CCDG	5 cut(s)	226, 269, 294, 319, 410
Lsp1109I	GCAGC	1 cut(s)	26
MaeII	ACGT	1 cut(s)	154
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	1 cut(s)	341
MboI	GATC	1 cut(s)	339
MboII	GAAGA	5 cut(s)	32, 35, 220, 349, 410
MluCI	AATT	2 cut(s)	48, 120
MlyI	GAGTC	1 cut(s)	255
MroXI	GAANNNNTTC	1 cut(s)	414
MseI	TTAA	1 cut(s)	147
MspA1I	CMGCKG	1 cut(s)	17
MspI	CCGG	1 cut(s)	213
MwoI	GCNNNNNNNGC	3 cut(s)	11, 17, 285
NdeII	GATC	1 cut(s)	339
NlaIV	GGNNCC	1 cut(s)	21
NmuCI	GTSAC	1 cut(s)	158
NspV	TTCGAA	1 cut(s)	46
PcsI	WCGNNNNNNNCGW	2 cut(s)	43, 292
PdmI	GAANNNNTTC	1 cut(s)	414
PfeI	GAWTC	1 cut(s)	64
PflFI	GACNNNGTC	1 cut(s)	156
PkrI	GCNGC	3 cut(s)	13, 16, 19
PleI	GAGTC	1 cut(s)	255
PpsI	GAGTC	1 cut(s)	255
PspN4I	GGNNCC	1 cut(s)	21
PspPI	GGNCC	1 cut(s)	278
PstI	CTGCAG	1 cut(s)	16
PsyI	GACNNNGTC	1 cut(s)	156
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
SalI	GTCGAC	1 cut(s)	344
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	3 cut(s)	12, 15, 18
Sau3AI	GATC	1 cut(s)	339
Sau96I	GGNCC	1 cut(s)	278
ScaI	AGTACT	1 cut(s)	332
SchI	GAGTC	1 cut(s)	255
SetI	ASST	7 cut(s)	13, 93, 157, 165, 189, 200, 375
SfcI	CTRYAG	1 cut(s)	12
SfuI	TTCGAA	1 cut(s)	46
SgrDI	CGTCGACG	1 cut(s)	344
Sse9I	AATT	2 cut(s)	48, 120
SsiI	CCGC	2 cut(s)	17, 76
TaiI	ACGT	1 cut(s)	157
TaqI	TCGA	3 cut(s)	46, 231, 345
TasI	AATT	2 cut(s)	48, 120
TatI	WGTACW	1 cut(s)	330
TauI	GCSGC	1 cut(s)	20
TfiI	GAWTC	1 cut(s)	64
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	2 cut(s)	11, 14
Tsp45I	GTSAC	1 cut(s)	158
Tth111I	GACNNNGTC	1 cut(s)	156
XapI	RAATTY	1 cut(s)	48
XcmI	CCANNNNNNNNNTGG	1 cut(s)	272
XmiI	GTMKAC	1 cut(s)	345
XmnI	GAANNNNTTC	1 cut(s)	414
ZraI	GACGTC	1 cut(s)	155
ZrmI	AGTACT	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.