Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0025215

Physical Location & Seq

Genomic Coordinates Reverse (-)

82721401 .. 82722995

Gene Structure 1595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00060520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGCTTTAGCTGCGGTGGCGGCTCCTCCTCATCATCGTCTTCTTCGAATTTGTCATCATCGGGTTCCTCGGGGTTTGGCTTCGTCATCTTCCTCAAAAGCCAAGAGACACAAAGCAAGTTTGTTCAAGCTTCGCAATGGTGGAACCCCAAATCTCCAAGAGCTTCCCCGTGAACCGAAGCAAAAACCCAAGCCTCGCACCCTAGAGCCAACTCCTAAATCCAAGTACCGGTCCTCCTTCAAAACCAAGCAAATCCCAAATCTCATCTCCTCCATAACTCCCCCGTATTCTCACCCACCGCCCCTCACTCCACCTCCCTCACCCTCTACAACCCCAAAAGCAATTCTCCCCCACTTCCACCATCTCCTTAAACGACGTCGTCACCTCTCGCCTCTTTCCGCCGCGATGACCTCCTCATCGCCGCAGCCAATATCTCCGGCCTCGTCCAAGTATTCGATGTTAGAACCCAAACCCCGCTCCGAGACTCCAATCCCACAATGGCCCCGTTCGCAATCGCCGATAAGCCCCATTTGGTTTGCACATAGTCGTCGAGTACGGAACATTGCCGGCGAGACCGCAATTTGCGACTTCGAGGTAAGGCCGACCAATCTCGGAGATCACAAAGCAGTGGCGAACTTGTTCTTCTGTCGGGCCATCGGATTGTTTAAGGCAGACCGCATCAAGAAAGGACGAGGTTCTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0031461 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0070013 GO:0071704 GO:0071840 GO:0080008 GO:0090304 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

UTP15_C WD40

Protein Analysis

234

Amino Acids

26.06

Weight (kDa)

11.54

Isoelectric Point (pI)

70.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025215)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000002872
rosa_multiflora	Rmu_sc0000898.1_g000014
rosa_roxburghii	Rroxscaffold_1G00060520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	379
AccBSI	CCGCTC	1 cut(s)	477
AccII	CGCG	1 cut(s)	404
AciI	CCGC	9 cut(s)	14, 20, 299, 399, 402, 422, 475, 576, 676
AcsI	RAATTY	1 cut(s)	48
AcyI	GRCGYC	1 cut(s)	376
AfaI	GTAC	2 cut(s)	227, 555
AfiI	CCNNNNNNNGG	1 cut(s)	228
AgeI	ACCGGT	1 cut(s)	228
AgsI	TTSAA	2 cut(s)	127, 241
AluBI	AGCT	3 cut(s)	11, 130, 163
AluI	AGCT	3 cut(s)	11, 130, 163
Alw26I	GTCTC	3 cut(s)	100, 476, 566
Ama87I	CYCGRG	1 cut(s)	69
AoxI	GGCC	4 cut(s)	438, 500, 599, 651
ApeKI	GCWGC	2 cut(s)	11, 424
ApoI	RAATTY	1 cut(s)	48
AsiGI	ACCGGT	1 cut(s)	228
Asp700I	GAANNNNTTC	1 cut(s)	638
AspS9I	GGNCC	3 cut(s)	231, 501, 651
AsuHPI	GGTGA	3 cut(s)	284, 312, 374
AsuII	TTCGAA	1 cut(s)	46
AvaI	CYCGRG	1 cut(s)	69
AvaII	GGWCC	1 cut(s)	231
BbsI	GAAGAC	1 cut(s)	32
BbvI	GCAGC	1 cut(s)	436
BccI	CCATC	2 cut(s)	369, 662
BcoDI	GTCTC	3 cut(s)	100, 476, 566
BfaI	CTAG	1 cut(s)	203
BisI	GCNGC	5 cut(s)	12, 21, 402, 422, 425
BlsI	GCNGC	5 cut(s)	13, 22, 403, 423, 426
Bme18I	GGWCC	1 cut(s)	231
BmeT110I	CYCGRG	1 cut(s)	69
BmgT120I	GGNCC	3 cut(s)	231, 501, 651
BmiI	GGNNCC	4 cut(s)	24, 66, 145, 503
BmsI	GCATC	1 cut(s)	687
BpiI	GAAGAC	1 cut(s)	32
Bpu14I	TTCGAA	1 cut(s)	46
BsaHI	GRCGYC	1 cut(s)	376
BsaI	GGTCTC	1 cut(s)	566
BsaJI	CCNNGG	1 cut(s)	68
BsaWI	WCCGGW	1 cut(s)	228
BsaXI	ACNNNNNCTCC	4 cut(s)	218, 248, 298, 328
Bsc4I	CCNNNNNNNGG	1 cut(s)	228
Bse118I	RCCGGY	2 cut(s)	228, 566
Bse3DI	GCAATG	2 cut(s)	142, 561
BseDI	CCNNGG	1 cut(s)	68
BseLI	CCNNNNNNNGG	1 cut(s)	228
BseMI	GCAATG	2 cut(s)	142, 561
BseRI	GAGGAG	4 cut(s)	15, 18, 259, 403
BseXI	GCAGC	1 cut(s)	436
Bsh1236I	CGCG	1 cut(s)	404
BshFI	GGCC	4 cut(s)	440, 502, 601, 653
BshTI	ACCGGT	1 cut(s)	228
BsiHKCI	CYCGRG	1 cut(s)	69
BsiSI	CCGG	3 cut(s)	229, 437, 567
BslI	CCNNNNNNNGG	1 cut(s)	228
BsmAI	GTCTC	3 cut(s)	100, 476, 566
BsnI	GGCC	4 cut(s)	440, 502, 601, 653
Bso31I	GGTCTC	1 cut(s)	566
BsoBI	CYCGRG	1 cut(s)	69
Bsp119I	TTCGAA	1 cut(s)	46
Bsp143I	GATC	1 cut(s)	616
BspACI	CCGC	9 cut(s)	14, 20, 299, 399, 402, 422, 475, 576, 676
BspANI	GGCC	4 cut(s)	440, 502, 601, 653
BspFNI	CGCG	1 cut(s)	404
BspLI	GGNNCC	4 cut(s)	24, 66, 145, 503
BspT104I	TTCGAA	1 cut(s)	46
BspTNI	GGTCTC	1 cut(s)	566
BsrBI	CCGCTC	1 cut(s)	477
BsrDI	GCAATG	2 cut(s)	142, 561
BsrFI	RCCGGY	2 cut(s)	228, 566
BssAI	RCCGGY	2 cut(s)	228, 566
BssECI	CCNNGG	1 cut(s)	68
BssMI	GATC	1 cut(s)	616
BssNI	GRCGYC	1 cut(s)	376
BstACI	GRCGYC	1 cut(s)	376
BstBI	TTCGAA	1 cut(s)	46
BstC8I	GCNNGC	1 cut(s)	568
BstFNI	CGCG	1 cut(s)	404
BstKTI	GATC	1 cut(s)	619
BstMAI	GTCTC	3 cut(s)	100, 476, 566
BstMBI	GATC	1 cut(s)	616
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 17, 20, 508
BstUI	CGCG	1 cut(s)	404
BstV1I	GCAGC	1 cut(s)	436
BstV2I	GAAGAC	1 cut(s)	32
BsuRI	GGCC	4 cut(s)	440, 502, 601, 653
BtgZI	GCGATG	2 cut(s)	402, 419
BtsI	GCAGTG	1 cut(s)	633
BtsIMutI	CAGTG	1 cut(s)	633
Cac8I	GCNNGC	1 cut(s)	568
Cfr10I	RCCGGY	2 cut(s)	228, 566
Cfr13I	GGNCC	3 cut(s)	231, 501, 651
Csp6I	GTAC	2 cut(s)	226, 554
CspAI	ACCGGT	1 cut(s)	228
CviQI	GTAC	2 cut(s)	226, 554
DpnI	GATC	1 cut(s)	618
DpnII	GATC	1 cut(s)	616
EciI	GGCGGA	1 cut(s)	388
Eco31I	GGTCTC	1 cut(s)	566
Eco47I	GGWCC	1 cut(s)	231
Eco88I	CYCGRG	1 cut(s)	69
FaiI	YATR	2 cut(s)	275, 543
FauI	CCCGC	1 cut(s)	482
Fnu4HI	GCNGC	5 cut(s)	12, 21, 402, 422, 425
Fsp4HI	GCNGC	5 cut(s)	12, 21, 402, 422, 425
FspBI	CTAG	1 cut(s)	203
GluI	GCNGC	5 cut(s)	12, 21, 402, 422, 425
HaeIII	GGCC	4 cut(s)	440, 502, 601, 653
HapII	CCGG	3 cut(s)	229, 437, 567
Hin1I	GRCGYC	1 cut(s)	376
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	1 cut(s)	484
HpaII	CCGG	3 cut(s)	229, 437, 567
HphI	GGTGA	3 cut(s)	284, 312, 374
Hpy166II	GTNNAC	1 cut(s)	173
Hpy188I	TCNGA	3 cut(s)	481, 614, 659
Hpy188III	TCNNGA	1 cut(s)	682
Hpy8I	GTNNAC	1 cut(s)	173
Hpy99I	CGWCG	3 cut(s)	378, 381, 552
HpyAV	CCTTC	1 cut(s)	247
HpyCH4IV	ACGT	1 cut(s)	376
HpyCH4V	TGCA	1 cut(s)	539
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 17, 20, 508
HpySE526I	ACGT	1 cut(s)	376
Hsp92I	GRCGYC	1 cut(s)	376
KroI	GCCGGC	1 cut(s)	566
KroNI	GCCGGC	1 cut(s)	568
Kzo9I	GATC	1 cut(s)	616
LmnI	GCTCC	2 cut(s)	28, 482
LpnPI	CCDG	3 cut(s)	242, 450, 580
Lsp1109I	GCAGC	1 cut(s)	436
LweI	GCATC	1 cut(s)	687
MaeI	CTAG	1 cut(s)	203
MaeII	ACGT	1 cut(s)	376
MaeIII	GTNAC	1 cut(s)	380
MalI	GATC	1 cut(s)	618
MbiI	CCGCTC	1 cut(s)	477
MboI	GATC	1 cut(s)	616
MboII	GAAGA	4 cut(s)	32, 35, 81, 634
MluCI	AATT	3 cut(s)	48, 342, 579
MlyI	GAGTC	1 cut(s)	478
MroNI	GCCGGC	1 cut(s)	566
MroXI	GAANNNNTTC	1 cut(s)	638
MseI	TTAA	2 cut(s)	369, 666
MspI	CCGG	3 cut(s)	229, 437, 567
MvnI	CGCG	1 cut(s)	404
MwoI	GCNNNNNNNGC	4 cut(s)	11, 17, 20, 508
NaeI	GCCGGC	1 cut(s)	568
NdeII	GATC	1 cut(s)	616
NgoMIV	GCCGGC	1 cut(s)	566
NlaIV	GGNNCC	4 cut(s)	24, 66, 145, 503
NmuCI	GTSAC	1 cut(s)	380
NspV	TTCGAA	1 cut(s)	46
PcsI	WCGNNNNNNNCGW	3 cut(s)	43, 515, 697
PdiI	GCCGGC	1 cut(s)	568
PdmI	GAANNNNTTC	1 cut(s)	638
PflFI	GACNNNGTC	1 cut(s)	378
PinAI	ACCGGT	1 cut(s)	228
PkrI	GCNGC	5 cut(s)	13, 22, 403, 423, 426
PleI	GAGTC	1 cut(s)	478
PpsI	GAGTC	1 cut(s)	478
PspN4I	GGNNCC	4 cut(s)	24, 66, 145, 503
PspPI	GGNCC	3 cut(s)	231, 501, 651
PsyI	GACNNNGTC	1 cut(s)	378
RsaI	GTAC	2 cut(s)	227, 555
RsaNI	GTAC	2 cut(s)	226, 554
SaqAI	TTAA	2 cut(s)	369, 666
SatI	GCNGC	5 cut(s)	12, 21, 402, 422, 425
Sau3AI	GATC	1 cut(s)	616
Sau96I	GGNCC	3 cut(s)	231, 501, 651
SchI	GAGTC	1 cut(s)	478
SetI	ASST	9 cut(s)	13, 132, 165, 316, 379, 387, 413, 597, 697
SfaNI	GCATC	1 cut(s)	687
SfuI	TTCGAA	1 cut(s)	46
SinI	GGWCC	1 cut(s)	231
Sse9I	AATT	3 cut(s)	48, 342, 579
SsiI	CCGC	9 cut(s)	14, 20, 299, 399, 402, 422, 475, 576, 676
SspMI	CTAG	1 cut(s)	203
TaiI	ACGT	1 cut(s)	379
TaqI	TCGA	4 cut(s)	46, 455, 550, 591
TasI	AATT	3 cut(s)	48, 342, 579
TauI	GCSGC	3 cut(s)	23, 404, 424
Tru1I	TTAA	2 cut(s)	369, 666
Tru9I	TTAA	2 cut(s)	369, 666
TscAI	CASTG	1 cut(s)	633
TseFI	GTSAC	1 cut(s)	380
TseI	GCWGC	2 cut(s)	11, 424
Tsp45I	GTSAC	1 cut(s)	380
TspGWI	ACGGA	1 cut(s)	571
TspRI	CASTG	1 cut(s)	633
Tth111I	GACNNNGTC	1 cut(s)	378
VpaK11BI	GGWCC	1 cut(s)	231
XapI	RAATTY	1 cut(s)	48
XcmI	CCANNNNNNNNNTGG	1 cut(s)	495
XmnI	GAANNNNTTC	1 cut(s)	638
XspI	CTAG	1 cut(s)	203
ZraI	GACGTC	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.