Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0030305

Physical Location & Seq

Genomic Coordinates Forward (+)

55007013 .. 55007918

Gene Structure 906 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003986

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGTATTCTAGCATTTTTGGAGGAATAACAACAGATCCAGCTGCTATGGTGATCCCTATTGATGATCACATGGTCCACAGAGGGCATGGGGTTTTCGACACTGCTGCTATAAGGGATGATTATGAAGAATGTGAAGTGAATTATCTTCCAGATGTGCTTTCAAAGATGAAGGCTGAAGAAAAAAGTGCCTTTGCAGTGATTTGGCTGGATGTGGCTGCACGGCTAAGAGAGTTTTGGCGCTTGCGCCTGGTGAAGGAGGGTAAGCTTCGGGGAGTGAGAGTCTATAGTGTGACTGTGGAGGAAGGGAATAAGGCAGATGAGATGAATCAGATGATGCTTACCGGCAGTGGAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008153 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0019438 GO:0019752 GO:0032787 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046482 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00790 map00790

Pfam Domains

Protein Families

Aminotran_4

Protein Analysis

119

Amino Acids

13.3

Weight (kDa)

5.14

Isoelectric Point (pI)

29.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030305)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0081911
rosa_laevigata	RLG00000003986

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	29, 46
AcuI	CTGAAG	1 cut(s)	195
AfiI	CCNNNNNNNGG	1 cut(s)	253
AgsI	TTSAA	1 cut(s)	162
AjnI	CCWGG	1 cut(s)	246
AluBI	AGCT	2 cut(s)	41, 265
AluI	AGCT	2 cut(s)	41, 265
AlwI	GGATC	2 cut(s)	29, 46
ApeKI	GCWGC	3 cut(s)	41, 104, 215
AspLEI	GCGC	2 cut(s)	240, 246
AspS9I	GGNCC	1 cut(s)	73
AsuHPI	GGTGA	2 cut(s)	61, 262
AvaII	GGWCC	1 cut(s)	73
BbvI	GCAGC	3 cut(s)	28, 91, 202
BceAI	ACGGC	1 cut(s)	236
BcgI	CGANNNNNNTGC	2 cut(s)	86, 120
BciT130I	CCWGG	1 cut(s)	248
BclI	TGATCA	1 cut(s)	64
BfaI	CTAG	1 cut(s)	9
BfmI	CTRYAG	1 cut(s)	283
BfoI	RGCGCY	1 cut(s)	241
BisI	GCNGC	3 cut(s)	42, 105, 216
BlsI	GCNGC	3 cut(s)	43, 106, 217
Bme1390I	CCNGG	1 cut(s)	248
Bme18I	GGWCC	1 cut(s)	73
BmgT120I	GGNCC	1 cut(s)	73
BmrFI	CCNGG	1 cut(s)	248
BmsI	GCATC	1 cut(s)	324
BsaXI	ACNNNNNCTCC	2 cut(s)	264, 294
Bsc4I	CCNNNNNNNGG	1 cut(s)	253
Bse118I	RCCGGY	1 cut(s)	341
BseBI	CCWGG	1 cut(s)	248
BseGI	GGATG	2 cut(s)	121, 214
BseLI	CCNNNNNNNGG	1 cut(s)	253
BseXI	GCAGC	3 cut(s)	28, 91, 202
BsgI	GTGCAG	1 cut(s)	201
BsiSI	CCGG	1 cut(s)	342
BslI	CCNNNNNNNGG	1 cut(s)	253
Bsp143I	GATC	3 cut(s)	34, 51, 64
BspPI	GGATC	2 cut(s)	29, 46
BsrFI	RCCGGY	1 cut(s)	341
BssAI	RCCGGY	1 cut(s)	341
BssMI	GATC	3 cut(s)	34, 51, 64
Bst2UI	CCWGG	1 cut(s)	248
Bst4CI	ACNGT	1 cut(s)	295
BstC8I	GCNNGC	1 cut(s)	242
BstDEI	CTNAG	1 cut(s)	224
BstENI	CCTNNNNNAGG	1 cut(s)	251
BstF5I	GGATG	2 cut(s)	121, 214
BstH2I	RGCGCY	1 cut(s)	241
BstHHI	GCGC	2 cut(s)	240, 246
BstKTI	GATC	3 cut(s)	37, 54, 67
BstMBI	GATC	3 cut(s)	34, 51, 64
BstNI	CCWGG	1 cut(s)	248
BstSCI	CCNGG	1 cut(s)	246
BstSFI	CTRYAG	1 cut(s)	283
BstV1I	GCAGC	3 cut(s)	28, 91, 202
BstX2I	RGATCY	1 cut(s)	34
BstYI	RGATCY	1 cut(s)	34
BtsCI	GGATG	2 cut(s)	121, 214
BtsI	GCAGTG	3 cut(s)	99, 201, 352
BtsIMutI	CAGTG	3 cut(s)	99, 201, 352
Cac8I	GCNNGC	1 cut(s)	242
CfoI	GCGC	2 cut(s)	240, 246
Cfr10I	RCCGGY	1 cut(s)	341
Cfr13I	GGNCC	1 cut(s)	73
CviAII	CATG	2 cut(s)	70, 86
CviJI	RGCY	6 cut(s)	41, 173, 205, 215, 223, 265
CviKI_1	RGCY	6 cut(s)	41, 173, 205, 215, 223, 265
DdeI	CTNAG	1 cut(s)	224
DpnI	GATC	3 cut(s)	36, 53, 66
DpnII	GATC	3 cut(s)	34, 51, 64
Eco47I	GGWCC	1 cut(s)	73
Eco57I	CTGAAG	1 cut(s)	195
EcoNI	CCTNNNNNAGG	1 cut(s)	251
EcoRII	CCWGG	1 cut(s)	246
FaeI	CATG	2 cut(s)	73, 89
FaiI	YATR	6 cut(s)	47, 71, 87, 110, 123, 285
FatI	CATG	2 cut(s)	69, 85
FbaI	TGATCA	1 cut(s)	64
Fnu4HI	GCNGC	3 cut(s)	42, 105, 216
FokI	GGATG	2 cut(s)	128, 221
Fsp4HI	GCNGC	3 cut(s)	42, 105, 216
FspBI	CTAG	1 cut(s)	9
GlaI	GCGC	2 cut(s)	239, 245
GluI	GCNGC	3 cut(s)	42, 105, 216
HaeII	RGCGCY	1 cut(s)	241
HapII	CCGG	1 cut(s)	342
HhaI	GCGC	2 cut(s)	240, 246
Hin1II	CATG	2 cut(s)	73, 89
Hin6I	GCGC	2 cut(s)	238, 244
HinP1I	GCGC	2 cut(s)	238, 244
HindIII	AAGCTT	1 cut(s)	263
HinfI	GANTC	2 cut(s)	279, 325
HpaII	CCGG	1 cut(s)	342
HphI	GGTGA	2 cut(s)	61, 262
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188I	TCNGA	1 cut(s)	330
Hpy188III	TCNNGA	1 cut(s)	149
Hpy8I	GTNNAC	1 cut(s)	76
HpyAV	CCTTC	3 cut(s)	163, 247, 296
HpyCH4III	ACNGT	1 cut(s)	295
HpyCH4V	TGCA	2 cut(s)	194, 218
HpyF3I	CTNAG	1 cut(s)	224
Hsp92II	CATG	2 cut(s)	73, 89
HspAI	GCGC	2 cut(s)	238, 244
Ksp22I	TGATCA	1 cut(s)	64
Kzo9I	GATC	3 cut(s)	34, 51, 64
LpnPI	CCDG	5 cut(s)	51, 162, 191, 233, 260
Lsp1109I	GCAGC	3 cut(s)	28, 91, 202
LweI	GCATC	1 cut(s)	324
MaeI	CTAG	1 cut(s)	9
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	3 cut(s)	36, 53, 66
MboI	GATC	3 cut(s)	34, 51, 64
MboII	GAAGA	3 cut(s)	137, 137, 188
MflI	RGATCY	1 cut(s)	34
MluCI	AATT	1 cut(s)	139
MlyI	GAGTC	1 cut(s)	288
MnlI	CCTC	4 cut(s)	14, 74, 250, 292
MspA1I	CMGCKG	1 cut(s)	41
MspI	CCGG	1 cut(s)	342
MspR9I	CCNGG	1 cut(s)	248
MvaI	CCWGG	1 cut(s)	248
NdeII	GATC	3 cut(s)	34, 51, 64
NlaIII	CATG	2 cut(s)	73, 89
NmuCI	GTSAC	1 cut(s)	289
PfeI	GAWTC	1 cut(s)	325
PkrI	GCNGC	3 cut(s)	43, 106, 217
PleI	GAGTC	1 cut(s)	287
PpsI	GAGTC	1 cut(s)	287
Psp6I	CCWGG	1 cut(s)	246
PspGI	CCWGG	1 cut(s)	246
PspPI	GGNCC	1 cut(s)	73
PsuI	RGATCY	1 cut(s)	34
PvuII	CAGCTG	1 cut(s)	41
SatI	GCNGC	3 cut(s)	42, 105, 216
Sau3AI	GATC	3 cut(s)	34, 51, 64
Sau96I	GGNCC	1 cut(s)	73
SchI	GAGTC	1 cut(s)	288
ScrFI	CCNGG	1 cut(s)	248
SetI	ASST	2 cut(s)	43, 267
SfaNI	GCATC	1 cut(s)	324
SfcI	CTRYAG	1 cut(s)	283
SinI	GGWCC	1 cut(s)	73
Sse9I	AATT	1 cut(s)	139
SspMI	CTAG	1 cut(s)	9
StyD4I	CCNGG	1 cut(s)	246
TaaI	ACNGT	1 cut(s)	295
TaqI	TCGA	1 cut(s)	96
TasI	AATT	1 cut(s)	139
TfiI	GAWTC	1 cut(s)	325
TscAI	CASTG	3 cut(s)	106, 201, 352
TseFI	GTSAC	1 cut(s)	289
TseI	GCWGC	3 cut(s)	41, 104, 215
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	3 cut(s)	138, 182, 338
TspRI	CASTG	3 cut(s)	106, 201, 352
VpaK11BI	GGWCC	1 cut(s)	73
XagI	CCTNNNNNAGG	1 cut(s)	251
XcmI	CCANNNNNNNNNTGG	1 cut(s)	83
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.