Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0025241

Physical Location & Seq

Genomic Coordinates Reverse (-)

6286402 .. 6288308

Gene Structure 1907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006329

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGCCTGCTGCTGATAAACCAATGAGAATTGGGGTTTCTAATTCTTCCTTCCCCGCATTTGTAAAGGTTGGTTCAGATGGAAAGAGTTATAAAGGTTTCTGCATTCAAATTTTCCAAATGATGCAAAGTGGTTTGAATTATCCTCTGCCCTTTGAATTCCAATGCGTTGATGGCTCCTATGATGATTTGGTAGAACTAGTCCATAACAAGAAACGGCGAAGGCCAGGAGGTTTTGTCAAAGCCGGTTTTGGACAAAGGCGACGCTGGTTATGGACATCGTCTTCGAGCGCTTCCGCCGCTAAGGTTGAGTTTCAGGTTAAAGATAACGACCTCTTCGGCGTTGAGATTATCGACATCGCCTCTATCCCTGCAGTGGAAATCCCCTCCGAAAAATTCATTTCTTGCTCGTATGAGATTATTGGACCCACCGGAAAGCCTCTGAAGCCTAATTGCGCTACTAAGGTCAAGTTAAAGTTCATGCCCTTCGAGAAAAACCCGGTCTACAAGCACGGCATCCTCGGCAATCCTCACCTTGTACAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006950 GO:0008081 GO:0008150 GO:0008152 GO:0008219 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010119 GO:0010646 GO:0010647 GO:0012501 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0019637 GO:0023051 GO:0023056 GO:0030054 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046473 GO:0046486 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0090333 GO:1901419 GO:1901421 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

182

Amino Acids

20.14

Weight (kDa)

9.37

Isoelectric Point (pI)

48.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025241)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000006329
rosa_multiflora	Rmu_sc0002505.1_g000015
rosa_samantha	Rh7BG341000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	90
AccI	GTMKAC	1 cut(s)	501
AciI	CCGC	3 cut(s)	54, 294, 297
AcsI	RAATTY	3 cut(s)	108, 155, 392
AcuI	CTGAAG	1 cut(s)	461
AfaI	GTAC	1 cut(s)	537
AfeI	AGCGCT	1 cut(s)	289
AfiI	CCNNNNNNNGG	1 cut(s)	373
AgsI	TTSAA	3 cut(s)	107, 136, 155
AhlI	ACTAGT	1 cut(s)	196
AjnI	CCWGG	1 cut(s)	223
Aor51HI	AGCGCT	1 cut(s)	289
AoxI	GGCC	1 cut(s)	221
ApeKI	GCWGC	1 cut(s)	8
ApoI	RAATTY	3 cut(s)	108, 155, 392
ArsI	GACNNNNNNTTYG	2 cut(s)	265, 297
AspLEI	GCGC	2 cut(s)	290, 455
AspS9I	GGNCC	1 cut(s)	422
AsuC2I	CCSGG	1 cut(s)	497
AsuHPI	GGTGA	1 cut(s)	521
AvaII	GGWCC	1 cut(s)	422
BbsI	GAAGAC	1 cut(s)	273
BccI	CCATC	2 cut(s)	71, 164
BceAI	ACGGC	2 cut(s)	230, 526
BciT130I	CCWGG	1 cut(s)	225
BcnI	CCSGG	1 cut(s)	497
BcuI	ACTAGT	1 cut(s)	196
BfaI	CTAG	1 cut(s)	197
BfmI	CTRYAG	1 cut(s)	369
BfoI	RGCGCY	1 cut(s)	291
BisI	GCNGC	2 cut(s)	9, 297
BlsI	GCNGC	2 cut(s)	10, 298
Bme1390I	CCNGG	2 cut(s)	225, 497
Bme18I	GGWCC	1 cut(s)	422
BmgT120I	GGNCC	1 cut(s)	422
BmiI	GGNNCC	2 cut(s)	175, 424
BmrFI	CCNGG	2 cut(s)	225, 497
BmsI	GCATC	2 cut(s)	111, 522
BpiI	GAAGAC	1 cut(s)	273
Bpu10I	CCTNAGC	1 cut(s)	300
BpuMI	CCSGG	1 cut(s)	497
BsaJI	CCNNGG	1 cut(s)	517
BsaWI	WCCGGW	1 cut(s)	428
BsaXI	ACNNNNNCTCC	2 cut(s)	219, 249
Bsc4I	CCNNNNNNNGG	1 cut(s)	373
Bse118I	RCCGGY	1 cut(s)	242
BseBI	CCWGG	1 cut(s)	225
BseDI	CCNNGG	1 cut(s)	517
BseGI	GGATG	1 cut(s)	513
BseLI	CCNNNNNNNGG	1 cut(s)	373
BshFI	GGCC	1 cut(s)	223
BsiSI	CCGG	3 cut(s)	243, 429, 497
BslI	CCNNNNNNNGG	1 cut(s)	373
BsmI	GAATGC	1 cut(s)	102
BsnI	GGCC	1 cut(s)	223
Bsp1407I	TGTACA	1 cut(s)	535
BspACI	CCGC	3 cut(s)	54, 294, 297
BspANI	GGCC	1 cut(s)	223
BspLI	GGNNCC	2 cut(s)	175, 424
BspMAI	CTGCAG	1 cut(s)	373
BsrFI	RCCGGY	1 cut(s)	242
BsrGI	TGTACA	1 cut(s)	535
BssAI	RCCGGY	1 cut(s)	242
BssECI	CCNNGG	1 cut(s)	517
Bst2UI	CCWGG	1 cut(s)	225
Bst6I	CTCTTC	1 cut(s)	338
BstAUI	TGTACA	1 cut(s)	535
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	2 cut(s)	300, 459
BstF5I	GGATG	1 cut(s)	513
BstH2I	RGCGCY	1 cut(s)	291
BstHHI	GCGC	2 cut(s)	290, 455
BstMWI	GCNNNNNNNGC	4 cut(s)	171, 296, 442, 519
BstNI	CCWGG	1 cut(s)	225
BstSCI	CCNGG	2 cut(s)	223, 495
BstSFI	CTRYAG	1 cut(s)	369
BstV2I	GAAGAC	1 cut(s)	273
BsuRI	GGCC	1 cut(s)	223
BtgZI	GCGATG	1 cut(s)	340
BtsCI	GGATG	1 cut(s)	513
BtsI	GCAGTG	1 cut(s)	378
BtsIMutI	CAGTG	1 cut(s)	378
Cac8I	GCNNGC	1 cut(s)	6
CfoI	GCGC	2 cut(s)	290, 455
Cfr10I	RCCGGY	1 cut(s)	242
Cfr13I	GGNCC	1 cut(s)	422
CseI	GACGC	1 cut(s)	270
Csp6I	GTAC	1 cut(s)	536
CviAII	CATG	1 cut(s)	478
CviJI	RGCY	5 cut(s)	174, 223, 242, 436, 445
CviKI_1	RGCY	5 cut(s)	174, 223, 242, 436, 445
CviQI	GTAC	1 cut(s)	536
DdeI	CTNAG	2 cut(s)	300, 459
Eam1104I	CTCTTC	1 cut(s)	338
EarI	CTCTTC	1 cut(s)	338
EciI	GGCGGA	1 cut(s)	283
Eco47I	GGWCC	1 cut(s)	422
Eco47III	AGCGCT	1 cut(s)	289
Eco57I	CTGAAG	1 cut(s)	461
EcoRI	GAATTC	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	223
FaeI	CATG	1 cut(s)	481
FaiI	YATR	6 cut(s)	90, 180, 204, 271, 411, 479
FatI	CATG	1 cut(s)	477
FauI	CCCGC	1 cut(s)	61
FblI	GTMKAC	1 cut(s)	501
Fnu4HI	GCNGC	2 cut(s)	9, 297
FokI	GGATG	1 cut(s)	500
Fsp4HI	GCNGC	2 cut(s)	9, 297
FspBI	CTAG	1 cut(s)	197
GlaI	GCGC	2 cut(s)	289, 454
GluI	GCNGC	2 cut(s)	9, 297
HaeII	RGCGCY	1 cut(s)	291
HaeIII	GGCC	1 cut(s)	223
HapII	CCGG	3 cut(s)	243, 429, 497
HgaI	GACGC	1 cut(s)	270
HhaI	GCGC	2 cut(s)	290, 455
Hin1II	CATG	1 cut(s)	481
Hin6I	GCGC	2 cut(s)	288, 453
HinP1I	GCGC	2 cut(s)	288, 453
HpaII	CCGG	3 cut(s)	243, 429, 497
HphI	GGTGA	1 cut(s)	521
Hpy166II	GTNNAC	1 cut(s)	502
Hpy188I	TCNGA	3 cut(s)	76, 388, 441
Hpy188III	TCNNGA	1 cut(s)	487
Hpy8I	GTNNAC	1 cut(s)	502
Hpy99I	CGWCG	1 cut(s)	264
HpyAV	CCTTC	3 cut(s)	58, 213, 493
HpyCH4V	TGCA	3 cut(s)	102, 124, 371
HpyF10VI	GCNNNNNNNGC	4 cut(s)	171, 296, 442, 519
HpyF3I	CTNAG	2 cut(s)	300, 459
Hsp92II	CATG	1 cut(s)	481
HspAI	GCGC	2 cut(s)	288, 453
LmnI	GCTCC	1 cut(s)	179
LpnPI	CCDG	9 cut(s)	18, 210, 237, 250, 256, 299, 381, 442, 510
LweI	GCATC	2 cut(s)	111, 522
MaeI	CTAG	1 cut(s)	197
MboII	GAAGA	3 cut(s)	36, 273, 325
MluCI	AATT	8 cut(s)	27, 40, 108, 136, 155, 392, 448, 541
MnlI	CCTC	8 cut(s)	153, 221, 341, 370, 394, 447, 527, 537
MseI	TTAA	2 cut(s)	318, 470
MspI	CCGG	3 cut(s)	243, 429, 497
MspR9I	CCNGG	2 cut(s)	225, 497
Mva1269I	GAATGC	1 cut(s)	102
MvaI	CCWGG	1 cut(s)	225
MwoI	GCNNNNNNNGC	4 cut(s)	171, 296, 442, 519
NciI	CCSGG	1 cut(s)	497
NlaIII	CATG	1 cut(s)	481
NlaIV	GGNNCC	2 cut(s)	175, 424
NmeAIII	GCCGAG	1 cut(s)	498
PctI	GAATGC	1 cut(s)	102
PflFI	GACNNNGTC	1 cut(s)	277
PkrI	GCNGC	2 cut(s)	10, 298
PsiI	TTATAA	1 cut(s)	90
Psp6I	CCWGG	1 cut(s)	223
PspGI	CCWGG	1 cut(s)	223
PspN4I	GGNNCC	2 cut(s)	175, 424
PspPI	GGNCC	1 cut(s)	422
PstI	CTGCAG	1 cut(s)	373
PsyI	GACNNNGTC	1 cut(s)	277
RsaI	GTAC	1 cut(s)	537
RsaNI	GTAC	1 cut(s)	536
SaqAI	TTAA	2 cut(s)	318, 470
SatI	GCNGC	2 cut(s)	9, 297
Sau96I	GGNCC	1 cut(s)	422
ScrFI	CCNGG	2 cut(s)	225, 497
SetI	ASST	8 cut(s)	69, 97, 232, 306, 318, 333, 465, 534
SfaNI	GCATC	2 cut(s)	111, 522
SfcI	CTRYAG	1 cut(s)	369
SinI	GGWCC	1 cut(s)	422
SpeI	ACTAGT	1 cut(s)	196
Sse9I	AATT	8 cut(s)	27, 40, 108, 136, 155, 392, 448, 541
SsiI	CCGC	3 cut(s)	54, 294, 297
SspMI	CTAG	1 cut(s)	197
StyD4I	CCNGG	2 cut(s)	223, 495
TaqI	TCGA	3 cut(s)	284, 351, 486
TasI	AATT	8 cut(s)	27, 40, 108, 136, 155, 392, 448, 541
TatI	WGTACW	1 cut(s)	535
TauI	GCSGC	1 cut(s)	299
Tru1I	TTAA	2 cut(s)	318, 470
Tru9I	TTAA	2 cut(s)	318, 470
TscAI	CASTG	1 cut(s)	378
TseI	GCWGC	1 cut(s)	8
TspDTI	ATGAA	2 cut(s)	385, 466
TspRI	CASTG	1 cut(s)	378
Tth111I	GACNNNGTC	1 cut(s)	277
VpaK11BI	GGWCC	1 cut(s)	422
XapI	RAATTY	3 cut(s)	108, 155, 392
XcmI	CCANNNNNNNNNTGG	1 cut(s)	167
XmiI	GTMKAC	1 cut(s)	501
XspI	CTAG	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.