Rh7BG341000

Glutamate-gated receptor that probably acts as non- selective cation channel

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
Physical Location & Seq
Forward (+)
35596398 .. 35597123
726 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG341000.1

Sequence Viewer

Length: 399 bp
ATGCCTACTGCTGATAAACCAATGAGAATTGGGGTTCCTAATTCTTCCTTCCCCGCATTTGTAAAGGTTGGTTCAGATGGGAAGAGTTATAACGGTTTCAGCATTCAAATTTTCCAAATGATGCAAAGTGGTTTGAATTATCCTCTGCCCTTTGAATTCCAATACGTTGATGGCTCCTATGATGATCTGGTAGAACTAGTCCGTAACAAGACTCTTGATGCTGCTATTGGTGATATCACCATCCTAGCAGACCGTTTGGACAAAGTTGAATACACTCAGCCATATATCGAGTCTGGTTTGGTGCTAATAGTTCCAGAAAAAGCTGAGCAGTTAGATTGGACTTTGATAAAACCTTTCTCCGGGAAAATGTGGCGGCAAGTGGTGGGTTTCTTTCTCTGA

Protein Analysis

132

Amino Acids

14.91

Weight (kDa)

4.71

Isoelectric Point (pI)

30.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBP_bac_3 PF00497 9 - 109 1.7e-12 Bacterial extracellular solute-binding proteins, family 3
Lig_chan-Glu_bd PF10613 27 - 105 4e-07 Ligated ion channel L-glutamate- and glycine-binding site
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0025241)

Species Orthologous Gene IDs
rosa_laevigata RLG00000006329
rosa_multiflora Rmu_sc0002505.1_g000015
rosa_samantha Rh7BG341000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 90
AciI CCGC 2 cut(s) 54, 373
AcsI RAATTY 2 cut(s) 108, 155
AfiI CCNNNNNNNGG 1 cut(s) 359
AgsI TTSAA 4 cut(s) 107, 136, 155, 269
AhlI ACTAGT 1 cut(s) 196
AluBI AGCT 1 cut(s) 323
AluI AGCT 1 cut(s) 323
ApeKI GCWGC 1 cut(s) 221
ApoI RAATTY 2 cut(s) 108, 155
AsuC2I CCSGG 1 cut(s) 361
AsuHPI GGTGA 2 cut(s) 229, 242
BbvI GCAGC 1 cut(s) 208
BccI CCATC 3 cut(s) 71, 164, 248
BcnI CCSGG 1 cut(s) 361
BcuI ACTAGT 1 cut(s) 196
BfaI CTAG 2 cut(s) 197, 245
BisI GCNGC 2 cut(s) 222, 374
BlpI GCTNAGC 1 cut(s) 324
BlsI GCNGC 2 cut(s) 223, 375
Bme1390I CCNGG 1 cut(s) 361
BmiI GGNNCC 2 cut(s) 36, 175
BmrFI CCNGG 1 cut(s) 361
BmsI GCATC 2 cut(s) 111, 208
Bpu1102I GCTNAGC 1 cut(s) 324
BpuMI CCSGG 1 cut(s) 361
Bsc4I CCNNNNNNNGG 1 cut(s) 359
BseGI GGATG 1 cut(s) 240
BseLI CCNNNNNNNGG 1 cut(s) 359
BseMII CTCAG 2 cut(s) 290, 315
BseXI GCAGC 1 cut(s) 208
BsiSI CCGG 1 cut(s) 360
BslI CCNNNNNNNGG 1 cut(s) 359
BsmI GAATGC 1 cut(s) 102
Bsp143I GATC 1 cut(s) 184
Bsp1720I GCTNAGC 1 cut(s) 324
BspACI CCGC 2 cut(s) 54, 373
BspCNI CTCAG 2 cut(s) 289, 316
BspLI GGNNCC 2 cut(s) 36, 175
BssMI GATC 1 cut(s) 184
Bst4CI ACNGT 2 cut(s) 95, 254
Bst6I CTCTTC 1 cut(s) 77
BstDEI CTNAG 2 cut(s) 276, 324
BstF5I GGATG 1 cut(s) 240
BstKTI GATC 1 cut(s) 187
BstMBI GATC 1 cut(s) 184
BstSCI CCNGG 1 cut(s) 359
BstV1I GCAGC 1 cut(s) 208
BtsCI GGATG 1 cut(s) 240
CviJI RGCY 3 cut(s) 174, 280, 323
CviKI_1 RGCY 3 cut(s) 174, 280, 323
DdeI CTNAG 2 cut(s) 276, 324
DpnI GATC 1 cut(s) 186
DpnII GATC 1 cut(s) 184
Eam1104I CTCTTC 1 cut(s) 77
EarI CTCTTC 1 cut(s) 77
Eco32I GATATC 1 cut(s) 235
EcoRI GAATTC 1 cut(s) 155
EcoRV GATATC 1 cut(s) 235
FaiI YATR 4 cut(s) 90, 180, 283, 285
FauI CCCGC 1 cut(s) 61
Fnu4HI GCNGC 2 cut(s) 222, 374
FokI GGATG 1 cut(s) 227
Fsp4HI GCNGC 2 cut(s) 222, 374
FspBI CTAG 2 cut(s) 197, 245
GluI GCNGC 2 cut(s) 222, 374
HapII CCGG 1 cut(s) 360
HinfI GANTC 2 cut(s) 211, 290
HpaII CCGG 1 cut(s) 360
HphI GGTGA 2 cut(s) 229, 242
Hpy188I TCNGA 2 cut(s) 76, 398
Hpy188III TCNNGA 2 cut(s) 215, 314
HpyAV CCTTC 1 cut(s) 58
HpyCH4III ACNGT 2 cut(s) 95, 254
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 1 cut(s) 124
HpyF3I CTNAG 2 cut(s) 276, 324
HpySE526I ACGT 1 cut(s) 165
Kzo9I GATC 1 cut(s) 184
LmnI GCTCC 1 cut(s) 179
LpnPI CCDG 4 cut(s) 173, 279, 327, 373
Lsp1109I GCAGC 1 cut(s) 208
LweI GCATC 2 cut(s) 111, 208
MaeI CTAG 2 cut(s) 197, 245
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 1 cut(s) 203
MalI GATC 1 cut(s) 186
MboI GATC 1 cut(s) 184
MboII GAAGA 2 cut(s) 36, 94
MluCI AATT 5 cut(s) 27, 40, 108, 136, 155
MlyI GAGTC 2 cut(s) 205, 299
MnlI CCTC 1 cut(s) 153
MspI CCGG 1 cut(s) 360
MspR9I CCNGG 1 cut(s) 361
Mva1269I GAATGC 1 cut(s) 102
NciI CCSGG 1 cut(s) 361
NdeII GATC 1 cut(s) 184
NlaIV GGNNCC 2 cut(s) 36, 175
PctI GAATGC 1 cut(s) 102
PfoI TCCNGGA 1 cut(s) 359
PkrI GCNGC 2 cut(s) 223, 375
PleI GAGTC 2 cut(s) 205, 298
PpsI GAGTC 2 cut(s) 205, 298
PsiI TTATAA 1 cut(s) 90
PspN4I GGNNCC 2 cut(s) 36, 175
SatI GCNGC 2 cut(s) 222, 374
Sau3AI GATC 1 cut(s) 184
SchI GAGTC 2 cut(s) 205, 299
ScrFI CCNGG 1 cut(s) 361
SetI ASST 4 cut(s) 69, 168, 325, 355
SfaNI GCATC 2 cut(s) 111, 208
SpeI ACTAGT 1 cut(s) 196
Sse9I AATT 5 cut(s) 27, 40, 108, 136, 155
SsiI CCGC 2 cut(s) 54, 373
SspMI CTAG 2 cut(s) 197, 245
StyD4I CCNGG 1 cut(s) 359
TaaI ACNGT 2 cut(s) 95, 254
TaiI ACGT 1 cut(s) 168
TaqI TCGA 1 cut(s) 288
TasI AATT 5 cut(s) 27, 40, 108, 136, 155
TauI GCSGC 1 cut(s) 376
TseI GCWGC 1 cut(s) 221
TspGWI ACGGA 1 cut(s) 191
XapI RAATTY 2 cut(s) 108, 155
XcmI CCANNNNNNNNNTGG 1 cut(s) 167
XspI CTAG 2 cut(s) 197, 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.