Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0025255

Physical Location & Seq

Genomic Coordinates Reverse (-)

6649316 .. 6650196

Gene Structure 881 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006381

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGCCAGTGAGGAGTTGTGCAAAACGGAGAAGGCCGTCAATAGTATTCAAAGCGCTTCATCTAGTTCCTCTTCTTCTGACAAACGGGAGGATACCCAGTTGAGTTTTGTGGATCATCTATCCGTAGCATTGGATCAGAATAAAATTTTCAGCTTTAGAGATGACAAAGACCTTAAGAAAGGAAACACCATTGCCCCAGGACTCCTGAAAGCAATCGAGGAGTCGAGGATGTCCCTTGTCATTCTTTCGCCAAACTATGCTTCTTCAACATGGTGCTTGGATGAGCTGGTTTTCAAAGGCTGTCGAAGAACATGGTCAATAGTTCATCCGAATAAAGTAGACAGGTGGAAGGCTGCTTTACTTGAGGTTTCCAGTATTGCTGGCTGGGTTACAAAGGATAAGTGCGAAGCAAATATTGTCAATGACATTGTTAAGTTTGTACTCAAATGTTTAAAATGGATGCGTGAAAAGGCAGGAAGAGAGAACTTTGTGAAGGAACTTAAAGACTTTGCTGCTGATGTGGAGACTCTGTTGGATGAGTGGAAAGATAAAGTTGCTAATATGTTTGATACATTACAAGAGATAGCTGAGGATGTGGTGAATGTACGTGTTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 NB-ARC TIR

Protein Analysis

206

Amino Acids

23.14

Weight (kDa)

5.58

Isoelectric Point (pI)

39.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	26 - 97	2.4e-20	TIR domain
TIR_2	PF13676	35 - 96	2.2e-07	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0025255)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000006381
rosa_multiflora	Rmu_sc0013644.1_g000001
rosa_rugosa	Rorug04G0308200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	339
AclWI	GGATC	2 cut(s)	120, 141
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	144
AfaI	GTAC	2 cut(s)	441, 606
AfeI	AGCGCT	1 cut(s)	55
AflII	CTTAAG	1 cut(s)	173
AflIII	ACRYGT	1 cut(s)	607
AgsI	TTSAA	3 cut(s)	50, 267, 295
AjnI	CCWGG	1 cut(s)	196
AjuI	GAANNNNNNNTTGG	2 cut(s)	244, 276
AluBI	AGCT	3 cut(s)	153, 286, 587
AluI	AGCT	3 cut(s)	153, 286, 587
Alw26I	GTCTC	1 cut(s)	518
AlwI	GGATC	2 cut(s)	120, 141
Aor51HI	AGCGCT	1 cut(s)	55
AoxI	GGCC	2 cut(s)	3, 33
ApeKI	GCWGC	2 cut(s)	353, 512
ApoI	RAATTY	1 cut(s)	144
AspLEI	GCGC	1 cut(s)	56
AsuHPI	GGTGA	1 cut(s)	610
BalI	TGGCCA	1 cut(s)	5
BbvCI	CCTCAGC	1 cut(s)	588
BbvI	GCAGC	2 cut(s)	340, 499
BceAI	ACGGC	1 cut(s)	20
BciT130I	CCWGG	1 cut(s)	198
BciVI	GTATCC	1 cut(s)	85
BcoDI	GTCTC	1 cut(s)	518
BfaI	CTAG	1 cut(s)	63
BfoI	RGCGCY	1 cut(s)	57
BfrI	CTTAAG	1 cut(s)	173
BfuI	GTATCC	1 cut(s)	85
BisI	GCNGC	2 cut(s)	354, 513
BlsI	GCNGC	2 cut(s)	355, 514
Bme1390I	CCNGG	1 cut(s)	198
BmrFI	CCNGG	1 cut(s)	198
BmrI	ACTGGG	1 cut(s)	91
BmsI	GCATC	1 cut(s)	450
BmuI	ACTGGG	1 cut(s)	91
Bpu10I	CCTNAGC	1 cut(s)	588
BpuEI	CTTGAG	1 cut(s)	383
BsaAI	YACGTR	1 cut(s)	608
BsaJI	CCNNGG	1 cut(s)	196
BsaXI	ACNNNNNCTCC	2 cut(s)	515, 545
Bse1I	ACTGG	3 cut(s)	6, 97, 372
Bse3DI	GCAATG	1 cut(s)	189
BseBI	CCWGG	1 cut(s)	198
BseDI	CCNNGG	1 cut(s)	196
BseGI	GGATG	6 cut(s)	234, 286, 325, 465, 541, 598
BseMI	GCAATG	1 cut(s)	189
BseMII	CTCAG	1 cut(s)	579
BseNI	ACTGG	3 cut(s)	6, 97, 372
BseRI	GAGGAG	2 cut(s)	26, 233
BseXI	GCAGC	2 cut(s)	340, 499
BseYI	CCCAGC	1 cut(s)	384
BshFI	GGCC	2 cut(s)	5, 35
BslFI	GGGAC	1 cut(s)	217
BsmAI	GTCTC	1 cut(s)	518
BsmFI	GGGAC	1 cut(s)	217
BsnI	GGCC	2 cut(s)	5, 35
Bsp143I	GATC	2 cut(s)	112, 133
BspANI	GGCC	2 cut(s)	5, 35
BspCNI	CTCAG	1 cut(s)	580
BspPI	GGATC	2 cut(s)	120, 141
BspTI	CTTAAG	1 cut(s)	173
BsrDI	GCAATG	1 cut(s)	189
BsrI	ACTGG	3 cut(s)	6, 97, 372
BssECI	CCNNGG	1 cut(s)	196
BssMI	GATC	2 cut(s)	112, 133
Bst2UI	CCWGG	1 cut(s)	198
Bst6I	CTCTTC	2 cut(s)	76, 472
BstAFI	CTTAAG	1 cut(s)	173
BstBAI	YACGTR	1 cut(s)	608
BstC8I	GCNNGC	1 cut(s)	382
BstDEI	CTNAG	1 cut(s)	588
BstF5I	GGATG	6 cut(s)	234, 286, 325, 465, 541, 598
BstH2I	RGCGCY	1 cut(s)	57
BstHHI	GCGC	1 cut(s)	56
BstKTI	GATC	2 cut(s)	115, 136
BstMAI	GTCTC	1 cut(s)	518
BstMBI	GATC	2 cut(s)	112, 133
BstNI	CCWGG	1 cut(s)	198
BstSCI	CCNGG	1 cut(s)	196
BstV1I	GCAGC	2 cut(s)	340, 499
BsuI	GTATCC	1 cut(s)	85
BsuRI	GGCC	2 cut(s)	5, 35
BtsCI	GGATG	6 cut(s)	234, 286, 325, 465, 541, 598
BtsIMutI	CAGTG	1 cut(s)	13
Cac8I	GCNNGC	1 cut(s)	382
CfoI	GCGC	1 cut(s)	56
Csp6I	GTAC	2 cut(s)	440, 605
CviAII	CATG	2 cut(s)	270, 312
CviJI	RGCY	8 cut(s)	5, 35, 153, 286, 300, 353, 384, 587
CviKI_1	RGCY	8 cut(s)	5, 35, 153, 286, 300, 353, 384, 587
CviQI	GTAC	2 cut(s)	440, 605
DdeI	CTNAG	1 cut(s)	588
DpnI	GATC	2 cut(s)	114, 135
DpnII	GATC	2 cut(s)	112, 133
DraI	TTTAAA	1 cut(s)	453
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	76, 472
EarI	CTCTTC	2 cut(s)	76, 472
Eco47III	AGCGCT	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	196
FaeI	CATG	2 cut(s)	273, 315
FaiI	YATR	4 cut(s)	258, 271, 313, 563
FaqI	GGGAC	1 cut(s)	217
FatI	CATG	2 cut(s)	269, 311
FblI	GTMKAC	1 cut(s)	339
Fnu4HI	GCNGC	2 cut(s)	354, 513
FokI	GGATG	6 cut(s)	241, 293, 312, 472, 548, 605
Fsp4HI	GCNGC	2 cut(s)	354, 513
FspBI	CTAG	1 cut(s)	63
GlaI	GCGC	1 cut(s)	55
GluI	GCNGC	2 cut(s)	354, 513
GsaI	CCCAGC	1 cut(s)	388
HaeII	RGCGCY	1 cut(s)	57
HaeIII	GGCC	2 cut(s)	5, 35
HhaI	GCGC	1 cut(s)	56
Hin1II	CATG	2 cut(s)	273, 315
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HinfI	GANTC	3 cut(s)	201, 221, 526
HphI	GGTGA	1 cut(s)	610
Hpy166II	GTNNAC	1 cut(s)	340
Hpy188I	TCNGA	3 cut(s)	79, 138, 330
Hpy188III	TCNNGA	1 cut(s)	205
Hpy8I	GTNNAC	1 cut(s)	340
HpyAV	CCTTC	3 cut(s)	25, 343, 487
HpyCH4IV	ACGT	1 cut(s)	607
HpyCH4V	TGCA	1 cut(s)	21
HpyF3I	CTNAG	1 cut(s)	588
HpySE526I	ACGT	1 cut(s)	607
Hsp92II	CATG	2 cut(s)	273, 315
HspAI	GCGC	1 cut(s)	54
Kzo9I	GATC	2 cut(s)	112, 133
Lsp1109I	GCAGC	2 cut(s)	340, 499
LweI	GCATC	1 cut(s)	450
MaeI	CTAG	1 cut(s)	63
MaeII	ACGT	1 cut(s)	607
MaeIII	GTNAC	1 cut(s)	388
MalI	GATC	2 cut(s)	114, 135
MboI	GATC	2 cut(s)	112, 133
MboII	GAAGA	5 cut(s)	63, 66, 255, 318, 489
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	144
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	195, 230, 520
MmeI	TCCRAC	2 cut(s)	513, 592
MnlI	CCTC	7 cut(s)	4, 79, 82, 211, 219, 358, 583
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	174, 432, 452, 501
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	173
MspR9I	CCNGG	1 cut(s)	198
MvaI	CCWGG	1 cut(s)	198
NdeII	GATC	2 cut(s)	112, 133
NlaIII	CATG	2 cut(s)	273, 315
PkrI	GCNGC	2 cut(s)	355, 514
PleI	GAGTC	3 cut(s)	195, 229, 520
PpsI	GAGTC	3 cut(s)	195, 229, 520
Ppu21I	YACGTR	1 cut(s)	608
Psp6I	CCWGG	1 cut(s)	196
PspFI	CCCAGC	1 cut(s)	384
PspGI	CCWGG	1 cut(s)	196
RsaI	GTAC	2 cut(s)	441, 606
RsaNI	GTAC	2 cut(s)	440, 605
SaqAI	TTAA	4 cut(s)	174, 432, 452, 501
SatI	GCNGC	2 cut(s)	354, 513
Sau3AI	GATC	2 cut(s)	112, 133
SchI	GAGTC	3 cut(s)	195, 230, 520
ScrFI	CCNGG	1 cut(s)	198
SetI	ASST	7 cut(s)	155, 174, 288, 347, 369, 589, 610
SfaNI	GCATC	1 cut(s)	450
SmlI	CTYRAG	2 cut(s)	173, 362
SmoI	CTYRAG	2 cut(s)	173, 362
Sse9I	AATT	1 cut(s)	144
SspI	AATATT	1 cut(s)	415
SspMI	CTAG	1 cut(s)	63
StyD4I	CCNGG	1 cut(s)	196
TaiI	ACGT	1 cut(s)	610
TaqI	TCGA	3 cut(s)	216, 224, 304
TasI	AATT	1 cut(s)	144
TatI	WGTACW	1 cut(s)	439
Tru1I	TTAA	4 cut(s)	174, 432, 452, 501
Tru9I	TTAA	4 cut(s)	174, 432, 452, 501
TscAI	CASTG	1 cut(s)	13
TseI	GCWGC	2 cut(s)	353, 512
TspDTI	ATGAA	2 cut(s)	48, 314
TspGWI	ACGGA	2 cut(s)	41, 112
TspRI	CASTG	1 cut(s)	13
Vha464I	CTTAAG	1 cut(s)	173
XapI	RAATTY	1 cut(s)	144
XmiI	GTMKAC	1 cut(s)	339
XspI	CTAG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.