Rmu_sc0013644.1_g000001

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013644.1
OG0025255
Physical Location & Seq
Forward (+)
6904 .. 9647
2744 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013644.1_g000001.1.cds

Sequence Viewer

Length: 1290 bp
atgctctacgcgcccctcacagtggcggcgcgtggggctcacgcgccggtggccaccacctctgatggtcaccaaattttggcagcgccacctactcatcagacccaacatttttctcaaccgcaacacaatccaattttacctttaagagctccaaatcggcgggggggaaatgatcattgtcaaaaaccccaccttcgacagtggtttggtggccagaaatggccggaatcgccggaaaacgtcaactgccaccgtttgcttctcgccgtcgattctcgtttctccggccaaatcgtgacaatccacgaccaccagcatgtagagaaggaggaggcgagtcagcagccacctgggtctcgccaattgatggccggacgacggccaatcgaaggggaaaggggagagggccgacgctgggagagagagggaagagagagagaatctcgggggggtagtgaggagttgtgcaaaacggaaaaggctgtcaatagtattcaaagcgcttcatctggttcctcttcttcttctgacaaacgtaaatatgatgtgtttatcagtttcagagggaaggatacccggttgagttttgtggatcatctatccgtagccttggatcagaataaaatttgcaactttagagatgacaaagaccttaataaaggaaacaccattgccccagaactcctgaaagcaatcgaggagtcgaggatttcccttgacattctttcgccaaactatgcttcttcaacatggtgcttggatgagctggtgaagattctccattgcaaacaagatatagggcaagtgctcttaccgatattttaccaagtgcaaccgaagaacatgaatgggaggtttttaaaggctgtcaaagaacatggtctagttcatccgaataaagtagataggtggaagactactttaacttatcatccgaatatgctaattaatgtcgatttgagtccatatgtctataaacttgtgcccgaagcaaatattgtcaatgacattgttaagtttgtactcaaatgtttaaaatggatgcgtgaaaaggcaagaagagagaactttgtgagggaacttaaagtctttgctgctgatgtggagactctattggatgagtggaaagataaagctgctaatatgtttgatacattacaagagatagctgaggatctggagaatgagttcggagatggatctgaagacgaagctgcaaatgagagtgaagaagaagttattccgagttggataaatgagtggtttgcagatgattgtaaaacctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

429

Amino Acids

48.86

Weight (kDa)

6.09

Isoelectric Point (pI)

51.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025255)

Species Orthologous Gene IDs
rosa_laevigata RLG00000006381
rosa_multiflora Rmu_sc0013644.1_g000001
rosa_rugosa Rorug04G0308200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 79, 370
AccII CGCG 3 cut(s) 11, 31, 44
AciI CCGC 3 cut(s) 26, 122, 163
AclWI GGATC 4 cut(s) 603, 624, 1185, 1210
AcoI YGGCCR 6 cut(s) 51, 214, 224, 289, 372, 383
AcsI RAATTY 2 cut(s) 75, 627
AcuI CTGAAG 1 cut(s) 1227
AfaI GTAC 1 cut(s) 1026
AfeI AGCGCT 1 cut(s) 505
AfiI CCNNNNNNNGG 6 cut(s) 22, 79, 370, 381, 392, 418
AgsI TTSAA 2 cut(s) 500, 750
AjnI CCWGG 1 cut(s) 352
AjuI GAANNNNNNNTTGG 2 cut(s) 727, 759
AloI GAACNNNNNNTCC 2 cut(s) 1175, 1207
AluBI AGCT 5 cut(s) 152, 769, 1139, 1172, 1217
AluI AGCT 5 cut(s) 152, 769, 1139, 1172, 1217
Alw21I GWGCWC 2 cut(s) 154, 813
Alw26I GTCTC 2 cut(s) 363, 1103
AlwI GGATC 4 cut(s) 603, 624, 1185, 1210
Ama87I CYCGRG 1 cut(s) 447
Aor51HI AGCGCT 1 cut(s) 505
AoxI GGCC 7 cut(s) 51, 214, 224, 289, 372, 383, 409
ApeKI GCWGC 5 cut(s) 83, 346, 1097, 1139, 1217
ApoI RAATTY 2 cut(s) 75, 627
AseI ATTAAT 1 cut(s) 951
Asp700I GAANNNNTTC 2 cut(s) 1190, 1242
AspLEI GCGC 5 cut(s) 13, 31, 46, 88, 506
AspS9I GGNCC 1 cut(s) 409
AsuC2I CCSGG 1 cut(s) 580
AsuHPI GGTGA 2 cut(s) 62, 784
AvaI CYCGRG 1 cut(s) 447
BaeGI GKGCMC 1 cut(s) 990
BalI TGGCCA 2 cut(s) 53, 216
BanII GRGCYC 2 cut(s) 40, 154
BbsI GAAGAC 2 cut(s) 923, 1215
Bbv12I GWGCWC 2 cut(s) 154, 813
BbvCI CCTCAGC 1 cut(s) 1173
BbvI GCAGC 5 cut(s) 95, 358, 1084, 1126, 1204
BccI CCATC 3 cut(s) 59, 364, 1193
BceAI ACGGC 2 cut(s) 254, 398
BciT130I CCWGG 1 cut(s) 354
BciVI GTATCC 1 cut(s) 568
BclI TGATCA 1 cut(s) 175
BcnI CCSGG 1 cut(s) 580
BcoDI GTCTC 2 cut(s) 363, 1103
BfaI CTAG 1 cut(s) 887
BfoI RGCGCY 2 cut(s) 89, 507
BfuI GTATCC 1 cut(s) 568
BisI GCNGC 6 cut(s) 27, 84, 347, 1098, 1140, 1218
BlsI GCNGC 6 cut(s) 28, 85, 348, 1099, 1141, 1219
Bme1390I CCNGG 2 cut(s) 354, 580
BmeT110I CYCGRG 1 cut(s) 447
BmgT120I GGNCC 1 cut(s) 409
BmiI GGNNCC 1 cut(s) 517
BmrFI CCNGG 2 cut(s) 354, 580
BmsI GCATC 1 cut(s) 1035
BpiI GAAGAC 2 cut(s) 923, 1215
BplI GAGNNNNNCTC 2 cut(s) 430, 462
BpmI CTGGAG 1 cut(s) 1202
Bpu10I CCTNAGC 1 cut(s) 1173
BpuMI CCSGG 1 cut(s) 580
BsaI GGTCTC 1 cut(s) 363
BsaJI CCNNGG 2 cut(s) 353, 612
BsaXI ACNNNNNCTCC 2 cut(s) 1175, 1205
Bsc4I CCNNNNNNNGG 6 cut(s) 22, 79, 370, 381, 392, 418
Bse118I RCCGGY 1 cut(s) 46
Bse3DI GCAATG 2 cut(s) 672, 784
BseBI CCWGG 1 cut(s) 354
BseDI CCNNGG 2 cut(s) 353, 612
BseGI GGATG 5 cut(s) 769, 892, 934, 1050, 1126
BseLI CCNNNNNNNGG 6 cut(s) 22, 79, 370, 381, 392, 418
BseMI GCAATG 2 cut(s) 672, 784
BseMII CTCAG 1 cut(s) 1164
BseRI GAGGAG 3 cut(s) 347, 476, 716
BseSI GKGCMC 1 cut(s) 990
BseXI GCAGC 5 cut(s) 95, 358, 1084, 1126, 1204
BseYI CCCAGC 1 cut(s) 417
Bsh1236I CGCG 3 cut(s) 11, 31, 44
BshFI GGCC 7 cut(s) 53, 216, 226, 291, 374, 385, 411
BsiHKAI GWGCWC 2 cut(s) 154, 813
BsiHKCI CYCGRG 1 cut(s) 447
BsiSI CCGG 6 cut(s) 47, 227, 236, 288, 375, 580
BslI CCNNNNNNNGG 6 cut(s) 22, 79, 370, 381, 392, 418
BsmAI GTCTC 2 cut(s) 363, 1103
BsnI GGCC 7 cut(s) 53, 216, 226, 291, 374, 385, 411
Bso31I GGTCTC 1 cut(s) 363
BsoBI CYCGRG 1 cut(s) 447
Bsp1286I GDGCHC 4 cut(s) 40, 154, 813, 990
Bsp143I GATC 5 cut(s) 175, 595, 616, 1177, 1202
BspACI CCGC 3 cut(s) 26, 122, 163
BspANI GGCC 7 cut(s) 53, 216, 226, 291, 374, 385, 411
BspCNI CTCAG 1 cut(s) 1165
BspFNI CGCG 3 cut(s) 11, 31, 44
BspLI GGNNCC 1 cut(s) 517
BspPI GGATC 4 cut(s) 603, 624, 1185, 1210
BspTNI GGTCTC 1 cut(s) 363
BsrDI GCAATG 2 cut(s) 672, 784
BsrFI RCCGGY 1 cut(s) 46
BssAI RCCGGY 1 cut(s) 46
BssECI CCNNGG 2 cut(s) 353, 612
BssMI GATC 5 cut(s) 175, 595, 616, 1177, 1202
BssT1I CCWWGG 1 cut(s) 612
Bst2UI CCWGG 1 cut(s) 354
Bst4CI ACNGT 3 cut(s) 22, 204, 257
Bst6I CTCTTC 3 cut(s) 427, 526, 1057
BstDEI CTNAG 1 cut(s) 1173
BstEII GGTNACC 1 cut(s) 68
BstF5I GGATG 5 cut(s) 769, 892, 934, 1050, 1126
BstFNI CGCG 3 cut(s) 11, 31, 44
BstH2I RGCGCY 2 cut(s) 89, 507
BstHHI GCGC 5 cut(s) 13, 31, 46, 88, 506
BstKTI GATC 5 cut(s) 178, 598, 619, 1180, 1205
BstMAI GTCTC 2 cut(s) 363, 1103
BstMBI GATC 5 cut(s) 175, 595, 616, 1177, 1202
BstMWI GCNNNNNNNGC 4 cut(s) 10, 35, 50, 232
BstNI CCWGG 1 cut(s) 354
BstNSI RCATGY 1 cut(s) 323
BstPI GGTNACC 1 cut(s) 68
BstSCI CCNGG 2 cut(s) 352, 578
BstSLI GKGCMC 1 cut(s) 990
BstUI CGCG 3 cut(s) 11, 31, 44
BstV1I GCAGC 5 cut(s) 95, 358, 1084, 1126, 1204
BstV2I GAAGAC 2 cut(s) 923, 1215
BstX2I RGATCY 2 cut(s) 1177, 1202
BstYI RGATCY 2 cut(s) 1177, 1202
BsuI GTATCC 1 cut(s) 568
BsuRI GGCC 7 cut(s) 53, 216, 226, 291, 374, 385, 411
BtsCI GGATG 5 cut(s) 769, 892, 934, 1050, 1126
BtsIMutI CAGTG 2 cut(s) 27, 209
CfoI GCGC 5 cut(s) 13, 31, 46, 88, 506
Cfr10I RCCGGY 1 cut(s) 46
Cfr13I GGNCC 1 cut(s) 409
CseI GACGC 1 cut(s) 423
Csp6I GTAC 1 cut(s) 1025
CviAII CATG 4 cut(s) 320, 753, 847, 881
CviQI GTAC 1 cut(s) 1025
DdeI CTNAG 1 cut(s) 1173
DpnI GATC 5 cut(s) 177, 597, 618, 1179, 1204
DpnII GATC 5 cut(s) 175, 595, 616, 1177, 1202
DraI TTTAAA 2 cut(s) 864, 1038
EaeI YGGCCR 6 cut(s) 51, 214, 224, 289, 372, 383
Eam1104I CTCTTC 3 cut(s) 427, 526, 1057
EarI CTCTTC 3 cut(s) 427, 526, 1057
Ecl136II GAGCTC 1 cut(s) 152
Eco130I CCWWGG 1 cut(s) 612
Eco24I GRGCYC 2 cut(s) 40, 154
Eco31I GGTCTC 1 cut(s) 363
Eco47III AGCGCT 1 cut(s) 505
Eco53kI GAGCTC 1 cut(s) 152
Eco57I CTGAAG 1 cut(s) 1227
Eco88I CYCGRG 1 cut(s) 447
Eco91I GGTNACC 1 cut(s) 68
EcoICRI GAGCTC 1 cut(s) 152
EcoO65I GGTNACC 1 cut(s) 68
EcoRII CCWGG 1 cut(s) 352
EcoT14I CCWWGG 1 cut(s) 612
EcoT38I GRGCYC 2 cut(s) 40, 154
ErhI CCWWGG 1 cut(s) 612
FaeI CATG 4 cut(s) 323, 756, 850, 884
FatI CATG 4 cut(s) 319, 752, 846, 880
FauI CCCGC 1 cut(s) 156
FauNDI CATATG 1 cut(s) 970
FbaI TGATCA 1 cut(s) 175
Fnu4HI GCNGC 6 cut(s) 27, 84, 347, 1098, 1140, 1218
FokI GGATG 5 cut(s) 776, 879, 921, 1057, 1133
FriOI GRGCYC 2 cut(s) 40, 154
Fsp4HI GCNGC 6 cut(s) 27, 84, 347, 1098, 1140, 1218
FspBI CTAG 1 cut(s) 887
GlaI GCGC 5 cut(s) 12, 30, 45, 87, 505
GluI GCNGC 6 cut(s) 27, 84, 347, 1098, 1140, 1218
GsaI CCCAGC 1 cut(s) 421
GsuI CTGGAG 1 cut(s) 1202
HaeII RGCGCY 2 cut(s) 89, 507
HaeIII GGCC 7 cut(s) 53, 216, 226, 291, 374, 385, 411
HapII CCGG 6 cut(s) 47, 227, 236, 288, 375, 580
HgaI GACGC 1 cut(s) 423
HhaI GCGC 5 cut(s) 13, 31, 46, 88, 506
Hin1II CATG 4 cut(s) 323, 756, 850, 884
Hin6I GCGC 5 cut(s) 11, 29, 44, 86, 504
HinP1I GCGC 5 cut(s) 11, 29, 44, 86, 504
HincII GTYRAC 1 cut(s) 247
HindII GTYRAC 1 cut(s) 247
HinfI GANTC 8 cut(s) 230, 275, 340, 443, 704, 778, 964, 1111
HpaII CCGG 6 cut(s) 47, 227, 236, 288, 375, 580
HphI GGTGA 2 cut(s) 62, 784
Hpy166II GTNNAC 1 cut(s) 247
Hpy188III TCNNGA 3 cut(s) 298, 688, 1181
Hpy8I GTNNAC 1 cut(s) 247
Hpy99I CGWCG 3 cut(s) 275, 384, 417
HpyAV CCTTC 4 cut(s) 206, 322, 386, 565
HpyCH4III ACNGT 3 cut(s) 22, 204, 257
HpyCH4IV ACGT 2 cut(s) 243, 538
HpyCH4V TGCA 6 cut(s) 471, 633, 789, 835, 1220, 1271
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 35, 50, 232
HpyF3I CTNAG 1 cut(s) 1173
HpySE526I ACGT 2 cut(s) 243, 538
Hsp92II CATG 4 cut(s) 323, 756, 850, 884
HspAI GCGC 5 cut(s) 11, 29, 44, 86, 504
Ksp22I TGATCA 1 cut(s) 175
Kzo9I GATC 5 cut(s) 175, 595, 616, 1177, 1202
LmnI GCTCC 1 cut(s) 157
Lsp1109I GCAGC 5 cut(s) 95, 358, 1084, 1126, 1204
LweI GCATC 1 cut(s) 1035
MaeI CTAG 1 cut(s) 887
MaeII ACGT 2 cut(s) 243, 538
MaeIII GTNAC 2 cut(s) 68, 298
MalI GATC 5 cut(s) 177, 597, 618, 1179, 1204
MboI GATC 5 cut(s) 175, 595, 616, 1177, 1202
MfeI CAATTG 1 cut(s) 365
MflI RGATCY 2 cut(s) 1177, 1202
MhlI GDGCHC 4 cut(s) 40, 154, 813, 990
MlsI TGGCCA 2 cut(s) 53, 216
MluCI AATT 5 cut(s) 75, 135, 365, 627, 948
MluNI TGGCCA 2 cut(s) 53, 216
MlyI GAGTC 4 cut(s) 349, 713, 973, 1105
MmeI TCCRAC 1 cut(s) 1232
Mox20I TGGCCA 2 cut(s) 53, 216
MroXI GAANNNNTTC 2 cut(s) 1190, 1242
MscI TGGCCA 2 cut(s) 53, 216
MseI TTAA 8 cut(s) 146, 657, 863, 926, 951, 1017, 1037, 1086
MslI CAYNNNNRTG 1 cut(s) 318
Msp20I TGGCCA 2 cut(s) 53, 216
MspI CCGG 6 cut(s) 47, 227, 236, 288, 375, 580
MspR9I CCNGG 2 cut(s) 354, 580
MunI CAATTG 1 cut(s) 365
MvaI CCWGG 1 cut(s) 354
MvnI CGCG 3 cut(s) 11, 31, 44
MwoI GCNNNNNNNGC 4 cut(s) 10, 35, 50, 232
NciI CCSGG 1 cut(s) 580
NdeI CATATG 1 cut(s) 970
NdeII GATC 5 cut(s) 175, 595, 616, 1177, 1202
NlaIII CATG 4 cut(s) 323, 756, 850, 884
NlaIV GGNNCC 1 cut(s) 517
NmuCI GTSAC 2 cut(s) 68, 298
NspI RCATGY 1 cut(s) 323
PdmI GAANNNNTTC 2 cut(s) 1190, 1242
PfeI GAWTC 4 cut(s) 230, 275, 443, 778
PflMI CCANNNNNTGG 2 cut(s) 79, 370
PkrI GCNGC 6 cut(s) 28, 85, 348, 1099, 1141, 1219
PleI GAGTC 4 cut(s) 348, 712, 972, 1105
PpsI GAGTC 4 cut(s) 348, 712, 972, 1105
PshBI ATTAAT 1 cut(s) 951
Psp124BI GAGCTC 1 cut(s) 154
Psp6I CCWGG 1 cut(s) 352
PspEI GGTNACC 1 cut(s) 68
PspFI CCCAGC 1 cut(s) 417
PspGI CCWGG 1 cut(s) 352
PspN4I GGNNCC 1 cut(s) 517
PspPI GGNCC 1 cut(s) 409
PsuI RGATCY 2 cut(s) 1177, 1202
RsaI GTAC 1 cut(s) 1026
RsaNI GTAC 1 cut(s) 1025
RseI CAYNNNNRTG 1 cut(s) 318
SacI GAGCTC 1 cut(s) 154
SaqAI TTAA 8 cut(s) 146, 657, 863, 926, 951, 1017, 1037, 1086
SatI GCNGC 6 cut(s) 27, 84, 347, 1098, 1140, 1218
Sau3AI GATC 5 cut(s) 175, 595, 616, 1177, 1202
Sau96I GGNCC 1 cut(s) 409
SchI GAGTC 4 cut(s) 349, 713, 973, 1105
ScrFI CCNGG 2 cut(s) 354, 580
SduI GDGCHC 4 cut(s) 40, 154, 813, 990
SfaNI GCATC 1 cut(s) 1035
SgrAI CRCCGGYG 1 cut(s) 46
SmiMI CAYNNNNRTG 1 cut(s) 318
Sse9I AATT 5 cut(s) 75, 135, 365, 627, 948
SsiI CCGC 3 cut(s) 26, 122, 163
SspI AATATT 1 cut(s) 1000
SspMI CTAG 1 cut(s) 887
SstI GAGCTC 1 cut(s) 154
StyD4I CCNGG 2 cut(s) 352, 578
StyI CCWWGG 1 cut(s) 612
TaaI ACNGT 3 cut(s) 22, 204, 257
TaiI ACGT 2 cut(s) 246, 541
TaqI TCGA 6 cut(s) 199, 273, 390, 699, 707, 957
TasI AATT 5 cut(s) 75, 135, 365, 627, 948
TatI WGTACW 1 cut(s) 1024
TauI GCSGC 1 cut(s) 29
TfiI GAWTC 4 cut(s) 230, 275, 443, 778
Tru1I TTAA 8 cut(s) 146, 657, 863, 926, 951, 1017, 1037, 1086
Tru9I TTAA 8 cut(s) 146, 657, 863, 926, 951, 1017, 1037, 1086
TscAI CASTG 2 cut(s) 27, 209
TseFI GTSAC 2 cut(s) 68, 298
TseI GCWGC 5 cut(s) 83, 346, 1097, 1139, 1217
Tsp45I GTSAC 2 cut(s) 68, 298
TspDTI ATGAA 3 cut(s) 498, 863, 881
TspGWI ACGGA 2 cut(s) 491, 595
TspRI CASTG 2 cut(s) 27, 209
Van91I CCANNNNNTGG 2 cut(s) 79, 370
VspI ATTAAT 1 cut(s) 951
XapI RAATTY 2 cut(s) 75, 627
XceI RCATGY 1 cut(s) 323
XmnI GAANNNNTTC 2 cut(s) 1190, 1242
XspI CTAG 1 cut(s) 887
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.