RLG00000007466
ERF Family

Belongs to the small GTPase superfamily. SAR1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0021400
Physical Location & Seq
Reverse (-)
17195597 .. 17196025
429 bp
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UTR
Exon/CDS
Intron
RLM00000007466

Sequence Viewer

Length: 429 bp
ATGTTTCTTCTGGATTGGCTTCATGGAGCTCTTTCATCTATGGGGCTATTGAAGAAGAAGGCTAAGCATAGGCTCGTGTTCTTATTCCGAAACCACAGCCAGCTCGAATCCGGGAAAGACTGGAGAGTAATACAAAGTAAAGCGACTCAGCAACCAAACTCAGGCACTACTCTGACTATAGGGAATGTCAACTTCACCCCGTTGATTTTGGGGGGGGGGGGGGATGATATGGCTCGCAGGGTGTGGAAGGCCTACTATGCCATTGTGGATGGCGTAGTTTACATGGCTGATGCTAATGCCACGGAGAGATTTGAGGAATCAACAAAGGAGCTCGAGGCTCTTCTCTCCGAGGAGCTCGATGCTCCTCGCTCTGAGGAATCAGGCCTACTCCAATATCCGCCCCCTCTTTTTTCTGATCAACATATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 ko05134 map04141 map05134
Pfam Domains
Protein Families
Arf

Protein Analysis

143

Amino Acids

15.92

Weight (kDa)

5.78

Isoelectric Point (pI)

54.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 42 - 118 6.5e-14 ADP-ribosylation factor family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021400)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0424521
rosa_laevigata RLG00000007466
rosa_multiflora Rmu_sc0002603.1_g000010 Rmu_sc0003942.1_g000022
rosa_samantha Rh4CG271100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 398
AfiI CCNNNNNNNGG 1 cut(s) 161
AgsI TTSAA 1 cut(s) 52
AluBI AGCT 4 cut(s) 29, 103, 331, 355
AluI AGCT 4 cut(s) 29, 103, 331, 355
Alw21I GWGCWC 3 cut(s) 31, 333, 357
Ama87I CYCGRG 1 cut(s) 332
AoxI GGCC 2 cut(s) 249, 382
AsuC2I CCSGG 1 cut(s) 112
AsuHPI GGTGA 1 cut(s) 187
AvaI CYCGRG 1 cut(s) 332
BanII GRGCYC 3 cut(s) 31, 333, 357
BauI CACGAG 1 cut(s) 74
Bbv12I GWGCWC 3 cut(s) 31, 333, 357
BccI CCATC 1 cut(s) 263
BclI TGATCA 1 cut(s) 415
BcnI CCSGG 1 cut(s) 112
BfmI CTRYAG 1 cut(s) 177
BlpI GCTNAGC 1 cut(s) 63
Bme1390I CCNGG 1 cut(s) 112
BmeT110I CYCGRG 1 cut(s) 332
BmrFI CCNGG 1 cut(s) 112
BmsI GCATC 2 cut(s) 280, 349
BpmI CTGGAG 1 cut(s) 142
Bpu1102I GCTNAGC 1 cut(s) 63
BpuMI CCSGG 1 cut(s) 112
BsaJI CCNNGG 2 cut(s) 300, 348
Bsc4I CCNNNNNNNGG 1 cut(s) 161
Bse1I ACTGG 1 cut(s) 125
BseDI CCNNGG 2 cut(s) 300, 348
BseGI GGATG 2 cut(s) 229, 274
BseLI CCNNNNNNNGG 1 cut(s) 161
BseMII CTCAG 3 cut(s) 161, 174, 363
BseNI ACTGG 1 cut(s) 125
BseRI GAGGAG 2 cut(s) 354, 365
BshFI GGCC 2 cut(s) 251, 384
BsiHKAI GWGCWC 3 cut(s) 31, 333, 357
BsiHKCI CYCGRG 1 cut(s) 332
BsiSI CCGG 1 cut(s) 111
BslI CCNNNNNNNGG 1 cut(s) 161
BsnI GGCC 2 cut(s) 251, 384
BsoBI CYCGRG 1 cut(s) 332
Bsp1286I GDGCHC 3 cut(s) 31, 333, 357
Bsp143I GATC 1 cut(s) 415
Bsp1720I GCTNAGC 1 cut(s) 63
BspACI CCGC 1 cut(s) 398
BspANI GGCC 2 cut(s) 251, 384
BspCNI CTCAG 3 cut(s) 160, 173, 364
BspQI GCTCTTC 1 cut(s) 345
BsrI ACTGG 1 cut(s) 125
BssECI CCNNGG 2 cut(s) 300, 348
BssMI GATC 1 cut(s) 415
BssSI CACGAG 1 cut(s) 74
Bst2BI CACGAG 1 cut(s) 74
Bst6I CTCTTC 1 cut(s) 345
BstC8I GCNNGC 2 cut(s) 101, 235
BstDEI CTNAG 4 cut(s) 63, 147, 160, 372
BstDSI CCRYGG 1 cut(s) 300
BstF5I GGATG 2 cut(s) 229, 274
BstKTI GATC 1 cut(s) 418
BstMBI GATC 1 cut(s) 415
BstMWI GCNNNNNNNGC 1 cut(s) 257
BstSCI CCNGG 1 cut(s) 110
BstSFI CTRYAG 1 cut(s) 177
BsuRI GGCC 2 cut(s) 251, 384
BtgI CCRYGG 1 cut(s) 300
BtsCI GGATG 2 cut(s) 229, 274
Cac8I GCNNGC 2 cut(s) 101, 235
CviAII CATG 2 cut(s) 23, 283
DdeI CTNAG 4 cut(s) 63, 147, 160, 372
DpnI GATC 1 cut(s) 417
DpnII GATC 1 cut(s) 415
Eam1104I CTCTTC 1 cut(s) 345
EarI CTCTTC 1 cut(s) 345
EciI GGCGGA 1 cut(s) 387
Ecl136II GAGCTC 3 cut(s) 29, 331, 355
Eco147I AGGCCT 2 cut(s) 251, 384
Eco24I GRGCYC 3 cut(s) 31, 333, 357
Eco53kI GAGCTC 3 cut(s) 29, 331, 355
Eco88I CYCGRG 1 cut(s) 332
EcoICRI GAGCTC 3 cut(s) 29, 331, 355
EcoT38I GRGCYC 3 cut(s) 31, 333, 357
FaeI CATG 2 cut(s) 26, 286
FatI CATG 2 cut(s) 22, 282
FbaI TGATCA 1 cut(s) 415
FokI GGATG 2 cut(s) 236, 281
FriOI GRGCYC 3 cut(s) 31, 333, 357
GsuI CTGGAG 1 cut(s) 142
HaeIII GGCC 2 cut(s) 251, 384
HapII CCGG 1 cut(s) 111
Hin1II CATG 2 cut(s) 26, 286
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HinfI GANTC 4 cut(s) 107, 145, 317, 377
HpaII CCGG 1 cut(s) 111
HphI GGTGA 1 cut(s) 187
Hpy166II GTNNAC 2 cut(s) 190, 280
Hpy188I TCNGA 5 cut(s) 89, 174, 349, 373, 415
Hpy188III TCNNGA 1 cut(s) 11
Hpy8I GTNNAC 2 cut(s) 190, 280
HpyAV CCTTC 2 cut(s) 52, 241
HpyF10VI GCNNNNNNNGC 1 cut(s) 257
HpyF3I CTNAG 4 cut(s) 63, 147, 160, 372
Hsp92II CATG 2 cut(s) 26, 286
Ksp22I TGATCA 1 cut(s) 415
Kzo9I GATC 1 cut(s) 415
LguI GCTCTTC 1 cut(s) 345
LmnI GCTCC 4 cut(s) 26, 328, 352, 367
LpnPI CCDG 6 cut(s) 106, 113, 124, 147, 223, 366
LweI GCATC 2 cut(s) 280, 349
MalI GATC 1 cut(s) 417
MboI GATC 1 cut(s) 415
MboII GAAGA 3 cut(s) 64, 67, 332
MhlI GDGCHC 3 cut(s) 31, 333, 357
MlyI GAGTC 1 cut(s) 139
MnlI CCTC 6 cut(s) 307, 328, 343, 367, 375, 414
MspI CCGG 1 cut(s) 111
MspR9I CCNGG 1 cut(s) 112
MwoI GCNNNNNNNGC 1 cut(s) 257
NciI CCSGG 1 cut(s) 112
NdeII GATC 1 cut(s) 415
NlaIII CATG 2 cut(s) 26, 286
PaeR7I CTCGAG 1 cut(s) 332
PceI AGGCCT 2 cut(s) 251, 384
PciSI GCTCTTC 1 cut(s) 345
PfeI GAWTC 3 cut(s) 107, 317, 377
PfoI TCCNGGA 1 cut(s) 110
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
Psp124BI GAGCTC 3 cut(s) 31, 333, 357
PspXI VCTCGAGB 1 cut(s) 332
SacI GAGCTC 3 cut(s) 31, 333, 357
SapI GCTCTTC 1 cut(s) 345
Sau3AI GATC 1 cut(s) 415
SchI GAGTC 1 cut(s) 139
ScrFI CCNGG 1 cut(s) 112
SduI GDGCHC 3 cut(s) 31, 333, 357
SetI ASST 4 cut(s) 31, 105, 333, 357
SfaNI GCATC 2 cut(s) 280, 349
SfcI CTRYAG 1 cut(s) 177
Sfr274I CTCGAG 1 cut(s) 332
SlaI CTCGAG 1 cut(s) 332
SmlI CTYRAG 1 cut(s) 332
SmoI CTYRAG 1 cut(s) 332
SseBI AGGCCT 2 cut(s) 251, 384
SsiI CCGC 1 cut(s) 398
SstI GAGCTC 3 cut(s) 31, 333, 357
StuI AGGCCT 2 cut(s) 251, 384
StyD4I CCNGG 1 cut(s) 110
TaqI TCGA 3 cut(s) 105, 333, 357
TfiI GAWTC 3 cut(s) 107, 317, 377
TspDTI ATGAA 2 cut(s) 11, 24
TspGWI ACGGA 1 cut(s) 317
XhoI CTCGAG 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.