Rmu_sc0002603.1_g000010
ERF Family

Belongs to the small GTPase superfamily. SAR1 family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002603.1
Physical Location & Seq
Forward (+)
42768 .. 43190
423 bp
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UTR
Exon/CDS
Intron
Rmu_sc0002603.1_g000010.1.cds

Sequence Viewer

Length: 423 bp
atgtttcttctggattggctttatggagctctttcatctatggggctattgaagaagaaggctaagcataggatcgtgttcttatgccgaaaccacggccagctcgaatccgggaaagactggagagtaatacaaagtaaacagactcagcaaccaaactcaggcactactctgactgtagggaatgtcaacttcacccccgttgattttgggggggatgatatggctcgcagggtgtggaaggcctactatgccattgtggatggtgtactttacatggctgatgctaatgccacggagagatttgaggaatcaataaaggagctcgaggctcttctctccgaggagctcgatgctcctcgctccgaggaatcaggcctactccaatatccgccccctcttttttctgaacaacatatataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

140

Amino Acids

15.87

Weight (kDa)

5.36

Isoelectric Point (pI)

53.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021400)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0424521
rosa_laevigata RLG00000007466
rosa_multiflora Rmu_sc0002603.1_g000010 Rmu_sc0003942.1_g000022
rosa_samantha Rh4CG271100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 392
AclWI GGATC 1 cut(s) 80
AcoI YGGCCR 1 cut(s) 97
AfaI GTAC 1 cut(s) 270
AfiI CCNNNNNNNGG 1 cut(s) 161
AgsI TTSAA 1 cut(s) 52
AluBI AGCT 4 cut(s) 29, 103, 325, 349
AluI AGCT 4 cut(s) 29, 103, 325, 349
Alw21I GWGCWC 3 cut(s) 31, 327, 351
AlwI GGATC 1 cut(s) 80
Ama87I CYCGRG 1 cut(s) 326
AoxI GGCC 3 cut(s) 97, 243, 376
AsuC2I CCSGG 1 cut(s) 112
AsuHPI GGTGA 1 cut(s) 187
AvaI CYCGRG 1 cut(s) 326
BanII GRGCYC 3 cut(s) 31, 327, 351
Bbv12I GWGCWC 3 cut(s) 31, 327, 351
BccI CCATC 1 cut(s) 257
BceAI ACGGC 1 cut(s) 112
BcnI CCSGG 1 cut(s) 112
BfmI CTRYAG 1 cut(s) 177
BlpI GCTNAGC 1 cut(s) 63
Bme1390I CCNGG 1 cut(s) 112
BmeT110I CYCGRG 1 cut(s) 326
BmrFI CCNGG 1 cut(s) 112
BmsI GCATC 2 cut(s) 274, 343
BpmI CTGGAG 1 cut(s) 142
Bpu1102I GCTNAGC 1 cut(s) 63
BpuMI CCSGG 1 cut(s) 112
BsaJI CCNNGG 4 cut(s) 94, 294, 342, 366
Bsc4I CCNNNNNNNGG 1 cut(s) 161
Bse1I ACTGG 1 cut(s) 125
BseDI CCNNGG 4 cut(s) 94, 294, 342, 366
BseGI GGATG 2 cut(s) 223, 268
BseLI CCNNNNNNNGG 1 cut(s) 161
BseMII CTCAG 2 cut(s) 161, 174
BseNI ACTGG 1 cut(s) 125
BseRI GAGGAG 2 cut(s) 348, 359
BshFI GGCC 3 cut(s) 99, 245, 378
BsiHKAI GWGCWC 3 cut(s) 31, 327, 351
BsiHKCI CYCGRG 1 cut(s) 326
BsiSI CCGG 1 cut(s) 111
BslI CCNNNNNNNGG 1 cut(s) 161
BsnI GGCC 3 cut(s) 99, 245, 378
BsoBI CYCGRG 1 cut(s) 326
Bsp1286I GDGCHC 3 cut(s) 31, 327, 351
Bsp143I GATC 1 cut(s) 72
Bsp1720I GCTNAGC 1 cut(s) 63
BspACI CCGC 1 cut(s) 392
BspANI GGCC 3 cut(s) 99, 245, 378
BspCNI CTCAG 2 cut(s) 160, 173
BspPI GGATC 1 cut(s) 80
BspQI GCTCTTC 1 cut(s) 339
BsrI ACTGG 1 cut(s) 125
BssECI CCNNGG 4 cut(s) 94, 294, 342, 366
BssMI GATC 1 cut(s) 72
Bst4CI ACNGT 1 cut(s) 178
Bst6I CTCTTC 1 cut(s) 339
BstC8I GCNNGC 2 cut(s) 101, 229
BstDEI CTNAG 3 cut(s) 63, 147, 160
BstDSI CCRYGG 2 cut(s) 94, 294
BstF5I GGATG 2 cut(s) 223, 268
BstKTI GATC 1 cut(s) 75
BstMBI GATC 1 cut(s) 72
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstSCI CCNGG 1 cut(s) 110
BstSFI CTRYAG 1 cut(s) 177
BsuRI GGCC 3 cut(s) 99, 245, 378
BtgI CCRYGG 2 cut(s) 94, 294
BtsCI GGATG 2 cut(s) 223, 268
Cac8I GCNNGC 2 cut(s) 101, 229
Csp6I GTAC 1 cut(s) 269
CviAII CATG 1 cut(s) 277
CviQI GTAC 1 cut(s) 269
DdeI CTNAG 3 cut(s) 63, 147, 160
DpnI GATC 1 cut(s) 74
DpnII GATC 1 cut(s) 72
EaeI YGGCCR 1 cut(s) 97
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
EciI GGCGGA 1 cut(s) 381
Ecl136II GAGCTC 3 cut(s) 29, 325, 349
Eco147I AGGCCT 2 cut(s) 245, 378
Eco24I GRGCYC 3 cut(s) 31, 327, 351
Eco53kI GAGCTC 3 cut(s) 29, 325, 349
Eco88I CYCGRG 1 cut(s) 326
EcoICRI GAGCTC 3 cut(s) 29, 325, 349
EcoT38I GRGCYC 3 cut(s) 31, 327, 351
FaeI CATG 1 cut(s) 280
FatI CATG 1 cut(s) 276
FokI GGATG 2 cut(s) 230, 275
FriOI GRGCYC 3 cut(s) 31, 327, 351
GsuI CTGGAG 1 cut(s) 142
HaeIII GGCC 3 cut(s) 99, 245, 378
HapII CCGG 1 cut(s) 111
Hin1II CATG 1 cut(s) 280
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HinfI GANTC 4 cut(s) 107, 145, 311, 371
HpaII CCGG 1 cut(s) 111
HphI GGTGA 1 cut(s) 187
Hpy166II GTNNAC 3 cut(s) 140, 190, 269
Hpy188I TCNGA 4 cut(s) 174, 343, 367, 409
Hpy188III TCNNGA 1 cut(s) 11
Hpy8I GTNNAC 3 cut(s) 140, 190, 269
HpyAV CCTTC 2 cut(s) 52, 235
HpyCH4III ACNGT 1 cut(s) 178
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
HpyF3I CTNAG 3 cut(s) 63, 147, 160
Hsp92II CATG 1 cut(s) 280
Kzo9I GATC 1 cut(s) 72
LguI GCTCTTC 1 cut(s) 339
LmnI GCTCC 5 cut(s) 26, 322, 346, 361, 368
LpnPI CCDG 6 cut(s) 106, 113, 124, 147, 217, 360
LweI GCATC 2 cut(s) 274, 343
MalI GATC 1 cut(s) 74
MboI GATC 1 cut(s) 72
MboII GAAGA 3 cut(s) 64, 67, 326
MhlI GDGCHC 3 cut(s) 31, 327, 351
MlyI GAGTC 1 cut(s) 139
MnlI CCTC 6 cut(s) 301, 322, 337, 361, 369, 408
MspI CCGG 1 cut(s) 111
MspR9I CCNGG 1 cut(s) 112
MwoI GCNNNNNNNGC 1 cut(s) 251
NciI CCSGG 1 cut(s) 112
NdeII GATC 1 cut(s) 72
NlaIII CATG 1 cut(s) 280
PaeR7I CTCGAG 1 cut(s) 326
PceI AGGCCT 2 cut(s) 245, 378
PciSI GCTCTTC 1 cut(s) 339
PcsI WCGNNNNNNNCGW 1 cut(s) 102
PfeI GAWTC 3 cut(s) 107, 311, 371
PfoI TCCNGGA 1 cut(s) 110
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
Psp124BI GAGCTC 3 cut(s) 31, 327, 351
PspXI VCTCGAGB 1 cut(s) 326
RsaI GTAC 1 cut(s) 270
RsaNI GTAC 1 cut(s) 269
SacI GAGCTC 3 cut(s) 31, 327, 351
SapI GCTCTTC 1 cut(s) 339
Sau3AI GATC 1 cut(s) 72
SchI GAGTC 1 cut(s) 139
ScrFI CCNGG 1 cut(s) 112
SduI GDGCHC 3 cut(s) 31, 327, 351
SetI ASST 4 cut(s) 31, 105, 327, 351
SfaNI GCATC 2 cut(s) 274, 343
SfcI CTRYAG 1 cut(s) 177
Sfr274I CTCGAG 1 cut(s) 326
SlaI CTCGAG 1 cut(s) 326
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
SseBI AGGCCT 2 cut(s) 245, 378
SsiI CCGC 1 cut(s) 392
SstI GAGCTC 3 cut(s) 31, 327, 351
StuI AGGCCT 2 cut(s) 245, 378
StyD4I CCNGG 1 cut(s) 110
TaaI ACNGT 1 cut(s) 178
TaqI TCGA 3 cut(s) 105, 327, 351
TatI WGTACW 1 cut(s) 268
TfiI GAWTC 3 cut(s) 107, 311, 371
TspDTI ATGAA 1 cut(s) 24
TspGWI ACGGA 1 cut(s) 311
XhoI CTCGAG 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.