Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0018297

Physical Location & Seq

Genomic Coordinates Reverse (-)

45659223 .. 45659690

Gene Structure 468 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009050

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGATTTCCAGACCCCAAATACTTCTCTTCATCTAAGCCAACCCAACAACCATCATCATCAGCTGAACTTGGATCTTGTTCTTGACCATTTATCATCATCTTCCTCTTCCTCATCGTCCTCATCAACTCTCAGTGTTCCGCCTGTAGCGGATCAAATAACCCGGCGGGTATTTTCTTGCAACTATTGCCAGAGAAAGTTCTACAGTTGGCAGGCACTCGGAGGCCACCAAAATGCTCACAAGCTGGAGCGCACGTTAGCCAAGAAAAGCAGGGACCAGCTAAGCTCCGCCGTCGGACCTCATCACGGTGGCAGCTTGAACCAACGGCCAGGATCGAGCGCCGCGCCACGTCTTGCCGGATTAGCACATGCTGGTAGGTTTGGAGCTCATATCATGAACTGGGGATATAGGCCTGCAGAAAATGTTGAGGAGGAGATTGGCCACCTTGATTTGTCTTTAAGGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009909 GO:0009910 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0060860 GO:0060862 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

17.02

Weight (kDa)

9.14

Isoelectric Point (pI)

47.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018297)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0402731
rosa_laevigata	RLG00000009050
rosa_multiflora	Rmu_sc0000329.1_g000011 Rmu_sc0002451.1_g000010
rosa_roxburghii	Rroxscaffold_5G00347490
rosa_samantha	Rh4AG115700 Rh4BG108300 Rh4CG122700 Rh4DG108300
rosa_wichuraiana	Rw4G009250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	344
AciI	CCGC	5 cut(s)	140, 149, 166, 288, 342
AclWI	GGATC	3 cut(s)	81, 159, 340
AcoI	YGGCCR	2 cut(s)	326, 439
AfiI	CCNNNNNNNGG	1 cut(s)	305
AgsI	TTSAA	1 cut(s)	319
AjiI	CACGTC	1 cut(s)	350
AjnI	CCWGG	1 cut(s)	328
AluBI	AGCT	6 cut(s)	64, 244, 280, 285, 315, 386
AluI	AGCT	6 cut(s)	64, 244, 280, 285, 315, 386
Alw21I	GWGCWC	1 cut(s)	388
AlwI	GGATC	3 cut(s)	81, 159, 340
AoxI	GGCC	4 cut(s)	223, 326, 410, 439
ApeKI	GCWGC	1 cut(s)	312
AspLEI	GCGC	3 cut(s)	252, 341, 346
AspS9I	GGNCC	2 cut(s)	274, 296
AsuC2I	CCSGG	1 cut(s)	163
AvaII	GGWCC	2 cut(s)	274, 296
BalI	TGGCCA	1 cut(s)	441
BanII	GRGCYC	1 cut(s)	388
Bbv12I	GWGCWC	1 cut(s)	388
BbvI	GCAGC	1 cut(s)	324
BccI	CCATC	1 cut(s)	60
BceAI	ACGGC	2 cut(s)	275, 341
BciT130I	CCWGG	1 cut(s)	330
BcnI	CCSGG	1 cut(s)	163
BfmI	CTRYAG	3 cut(s)	144, 202, 414
BfoI	RGCGCY	1 cut(s)	342
BisI	GCNGC	2 cut(s)	313, 342
BlpI	GCTNAGC	1 cut(s)	281
BlsI	GCNGC	2 cut(s)	314, 343
Bme1390I	CCNGG	2 cut(s)	163, 330
Bme18I	GGWCC	2 cut(s)	274, 296
BmgBI	CACGTC	1 cut(s)	350
BmgT120I	GGNCC	2 cut(s)	274, 296
BmiI	GGNNCC	1 cut(s)	275
BmrFI	CCNGG	2 cut(s)	163, 330
BmrI	ACTGGG	1 cut(s)	409
BmuI	ACTGGG	1 cut(s)	409
BpmI	CTGGAG	1 cut(s)	266
Bpu1102I	GCTNAGC	1 cut(s)	281
BpuMI	CCSGG	1 cut(s)	163
BsaXI	ACNNNNNCTCC	2 cut(s)	239, 269
Bsc4I	CCNNNNNNNGG	1 cut(s)	305
Bse1I	ACTGG	1 cut(s)	404
BseBI	CCWGG	1 cut(s)	330
BseLI	CCNNNNNNNGG	1 cut(s)	305
BseMII	CTCAG	1 cut(s)	145
BseNI	ACTGG	1 cut(s)	404
BseRI	GAGGAG	2 cut(s)	443, 446
BseXI	GCAGC	1 cut(s)	324
Bsh1236I	CGCG	1 cut(s)	344
BshFI	GGCC	4 cut(s)	225, 328, 412, 441
BsiHKAI	GWGCWC	1 cut(s)	388
BsiSI	CCGG	2 cut(s)	163, 357
BslFI	GGGAC	1 cut(s)	287
BslI	CCNNNNNNNGG	1 cut(s)	305
BsmFI	GGGAC	1 cut(s)	287
BsnI	GGCC	4 cut(s)	225, 328, 412, 441
Bsp1286I	GDGCHC	1 cut(s)	388
Bsp143I	GATC	3 cut(s)	73, 151, 332
Bsp1720I	GCTNAGC	1 cut(s)	281
BspACI	CCGC	5 cut(s)	140, 149, 166, 288, 342
BspANI	GGCC	4 cut(s)	225, 328, 412, 441
BspCNI	CTCAG	1 cut(s)	144
BspFNI	CGCG	1 cut(s)	344
BspHI	TCATGA	1 cut(s)	393
BspLI	GGNNCC	1 cut(s)	275
BspMAI	CTGCAG	1 cut(s)	418
BspPI	GGATC	3 cut(s)	81, 159, 340
BsrI	ACTGG	1 cut(s)	404
BssMI	GATC	3 cut(s)	73, 151, 332
Bst2UI	CCWGG	1 cut(s)	330
Bst4CI	ACNGT	2 cut(s)	206, 308
Bst6I	CTCTTC	2 cut(s)	33, 112
BstAPI	GCANNNNNTGC	1 cut(s)	186
BstC8I	GCNNGC	2 cut(s)	213, 414
BstDEI	CTNAG	3 cut(s)	35, 131, 281
BstFNI	CGCG	1 cut(s)	344
BstH2I	RGCGCY	1 cut(s)	342
BstHHI	GCGC	3 cut(s)	252, 341, 346
BstKTI	GATC	3 cut(s)	76, 154, 335
BstMBI	GATC	3 cut(s)	73, 151, 332
BstMWI	GCNNNNNNNGC	2 cut(s)	186, 362
BstNI	CCWGG	1 cut(s)	330
BstNSI	RCATGY	1 cut(s)	371
BstSCI	CCNGG	2 cut(s)	161, 328
BstSFI	CTRYAG	3 cut(s)	144, 202, 414
BstUI	CGCG	1 cut(s)	344
BstV1I	GCAGC	1 cut(s)	324
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
BsuRI	GGCC	4 cut(s)	225, 328, 412, 441
BtrI	CACGTC	1 cut(s)	350
BtsIMutI	CAGTG	1 cut(s)	139
Cac8I	GCNNGC	2 cut(s)	213, 414
CciI	TCATGA	1 cut(s)	393
CfoI	GCGC	3 cut(s)	252, 341, 346
Cfr13I	GGNCC	2 cut(s)	274, 296
CviAII	CATG	2 cut(s)	368, 394
DdeI	CTNAG	3 cut(s)	35, 131, 281
DpnI	GATC	3 cut(s)	75, 153, 334
DpnII	GATC	3 cut(s)	73, 151, 332
EaeI	YGGCCR	2 cut(s)	326, 439
Eam1104I	CTCTTC	2 cut(s)	33, 112
EarI	CTCTTC	2 cut(s)	33, 112
EciI	GGCGGA	2 cut(s)	129, 277
Ecl136II	GAGCTC	1 cut(s)	386
Eco147I	AGGCCT	1 cut(s)	412
Eco24I	GRGCYC	1 cut(s)	388
Eco47I	GGWCC	2 cut(s)	274, 296
Eco53kI	GAGCTC	1 cut(s)	386
EcoICRI	GAGCTC	1 cut(s)	386
EcoRII	CCWGG	1 cut(s)	328
EcoT38I	GRGCYC	1 cut(s)	388
FaeI	CATG	2 cut(s)	371, 397
FaiI	YATR	4 cut(s)	369, 390, 395, 408
FaqI	GGGAC	1 cut(s)	287
FatI	CATG	2 cut(s)	367, 393
FauI	CCCGC	1 cut(s)	159
Fnu4HI	GCNGC	2 cut(s)	313, 342
FriOI	GRGCYC	1 cut(s)	388
Fsp4HI	GCNGC	2 cut(s)	313, 342
GlaI	GCGC	3 cut(s)	251, 340, 345
GluI	GCNGC	2 cut(s)	313, 342
GsuI	CTGGAG	1 cut(s)	266
HaeII	RGCGCY	1 cut(s)	342
HaeIII	GGCC	4 cut(s)	225, 328, 412, 441
HapII	CCGG	2 cut(s)	163, 357
HhaI	GCGC	3 cut(s)	252, 341, 346
Hin1II	CATG	2 cut(s)	371, 397
Hin6I	GCGC	3 cut(s)	250, 339, 344
HinP1I	GCGC	3 cut(s)	250, 339, 344
HpaII	CCGG	2 cut(s)	163, 357
Hpy188I	TCNGA	2 cut(s)	221, 296
Hpy188III	TCNNGA	3 cut(s)	10, 83, 394
Hpy99I	CGWCG	1 cut(s)	296
HpyCH4III	ACNGT	2 cut(s)	206, 308
HpyCH4IV	ACGT	2 cut(s)	254, 349
HpyCH4V	TGCA	2 cut(s)	180, 416
HpyF10VI	GCNNNNNNNGC	2 cut(s)	186, 362
HpyF3I	CTNAG	3 cut(s)	35, 131, 281
HpySE526I	ACGT	2 cut(s)	254, 349
Hsp92II	CATG	2 cut(s)	371, 397
HspAI	GCGC	3 cut(s)	250, 339, 344
Kzo9I	GATC	3 cut(s)	73, 151, 332
LmnI	GCTCC	3 cut(s)	247, 290, 383
Lsp1109I	GCAGC	1 cut(s)	324
MaeII	ACGT	2 cut(s)	254, 349
MalI	GATC	3 cut(s)	75, 153, 334
MboI	GATC	3 cut(s)	73, 151, 332
MboII	GAAGA	3 cut(s)	20, 93, 99
MflI	RGATCY	1 cut(s)	73
MhlI	GDGCHC	1 cut(s)	388
MlsI	TGGCCA	1 cut(s)	441
MluNI	TGGCCA	1 cut(s)	441
MmeI	TCCRAC	1 cut(s)	274
MnlI	CCTC	7 cut(s)	115, 121, 130, 215, 309, 421, 424
Mox20I	TGGCCA	1 cut(s)	441
MscI	TGGCCA	1 cut(s)	441
MseI	TTAA	1 cut(s)	458
MslI	CAYNNNNRTG	2 cut(s)	231, 306
Msp20I	TGGCCA	1 cut(s)	441
MspA1I	CMGCKG	1 cut(s)	64
MspI	CCGG	2 cut(s)	163, 357
MspR9I	CCNGG	2 cut(s)	163, 330
MteI	GCGCNGCGC	1 cut(s)	342
MvaI	CCWGG	1 cut(s)	330
MvnI	CGCG	1 cut(s)	344
MwoI	GCNNNNNNNGC	2 cut(s)	186, 362
NciI	CCSGG	1 cut(s)	163
NdeII	GATC	3 cut(s)	73, 151, 332
NlaIII	CATG	2 cut(s)	371, 397
NlaIV	GGNNCC	1 cut(s)	275
NspI	RCATGY	1 cut(s)	371
PagI	TCATGA	1 cut(s)	393
PceI	AGGCCT	1 cut(s)	412
PkrI	GCNGC	2 cut(s)	314, 343
Psp124BI	GAGCTC	1 cut(s)	388
Psp6I	CCWGG	1 cut(s)	328
PspGI	CCWGG	1 cut(s)	328
PspN4I	GGNNCC	1 cut(s)	275
PspPI	GGNCC	2 cut(s)	274, 296
PstI	CTGCAG	1 cut(s)	418
PsuI	RGATCY	1 cut(s)	73
PvuII	CAGCTG	1 cut(s)	64
RseI	CAYNNNNRTG	2 cut(s)	231, 306
SacI	GAGCTC	1 cut(s)	388
SaqAI	TTAA	1 cut(s)	458
SatI	GCNGC	2 cut(s)	313, 342
Sau3AI	GATC	3 cut(s)	73, 151, 332
Sau96I	GGNCC	2 cut(s)	274, 296
ScrFI	CCNGG	2 cut(s)	163, 330
SduI	GDGCHC	1 cut(s)	388
SfcI	CTRYAG	3 cut(s)	144, 202, 414
SinI	GGWCC	2 cut(s)	274, 296
SmiMI	CAYNNNNRTG	2 cut(s)	231, 306
SseBI	AGGCCT	1 cut(s)	412
SsiI	CCGC	5 cut(s)	140, 149, 166, 288, 342
SstI	GAGCTC	1 cut(s)	388
StuI	AGGCCT	1 cut(s)	412
StyD4I	CCNGG	2 cut(s)	161, 328
TaaI	ACNGT	2 cut(s)	206, 308
TaiI	ACGT	2 cut(s)	257, 352
TaqI	TCGA	1 cut(s)	335
TauI	GCSGC	1 cut(s)	344
Tru1I	TTAA	1 cut(s)	458
Tru9I	TTAA	1 cut(s)	458
TscAI	CASTG	1 cut(s)	139
TseI	GCWGC	1 cut(s)	312
TspDTI	ATGAA	2 cut(s)	20, 410
TspRI	CASTG	1 cut(s)	139
VpaK11BI	GGWCC	2 cut(s)	274, 296
XceI	RCATGY	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.