ZINC FINGER protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr4g0402731 |
| rosa_laevigata | RLG00000009050 |
| rosa_multiflora | Rmu_sc0000329.1_g000011 Rmu_sc0002451.1_g000010 |
| rosa_roxburghii | Rroxscaffold_5G00347490 |
| rosa_samantha | Rh4AG115700 Rh4BG108300 Rh4CG122700 Rh4DG108300 |
| rosa_wichuraiana | Rw4G009250 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 168 |
| AciI | CCGC | 4 cut(s) | 140, 149, 288, 344 |
| AclI | AACGTT | 1 cut(s) | 254 |
| AclWI | GGATC | 3 cut(s) | 81, 159, 340 |
| AcoI | YGGCCR | 2 cut(s) | 326, 439 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 305 |
| AgsI | TTSAA | 1 cut(s) | 319 |
| AjiI | CACGTC | 1 cut(s) | 350 |
| AjnI | CCWGG | 1 cut(s) | 328 |
| AluBI | AGCT | 6 cut(s) | 64, 244, 280, 285, 315, 386 |
| AluI | AGCT | 6 cut(s) | 64, 244, 280, 285, 315, 386 |
| Alw21I | GWGCWC | 1 cut(s) | 388 |
| AlwI | GGATC | 3 cut(s) | 81, 159, 340 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 371 |
| AoxI | GGCC | 4 cut(s) | 223, 326, 410, 439 |
| ApeKI | GCWGC | 1 cut(s) | 312 |
| AspLEI | GCGC | 2 cut(s) | 168, 341 |
| AspS9I | GGNCC | 2 cut(s) | 274, 296 |
| AsuC2I | CCSGG | 1 cut(s) | 163 |
| AvaII | GGWCC | 2 cut(s) | 274, 296 |
| BalI | TGGCCA | 1 cut(s) | 441 |
| BanII | GRGCYC | 1 cut(s) | 388 |
| Bbv12I | GWGCWC | 1 cut(s) | 388 |
| BbvI | GCAGC | 1 cut(s) | 324 |
| BccI | CCATC | 1 cut(s) | 60 |
| BceAI | ACGGC | 2 cut(s) | 275, 341 |
| BciT130I | CCWGG | 1 cut(s) | 330 |
| BcnI | CCSGG | 1 cut(s) | 163 |
| BfmI | CTRYAG | 3 cut(s) | 144, 202, 414 |
| BfoI | RGCGCY | 1 cut(s) | 342 |
| BisI | GCNGC | 1 cut(s) | 313 |
| BlpI | GCTNAGC | 1 cut(s) | 281 |
| BlsI | GCNGC | 1 cut(s) | 314 |
| Bme1390I | CCNGG | 2 cut(s) | 163, 330 |
| Bme18I | GGWCC | 2 cut(s) | 274, 296 |
| BmgBI | CACGTC | 1 cut(s) | 350 |
| BmgT120I | GGNCC | 2 cut(s) | 274, 296 |
| BmiI | GGNNCC | 1 cut(s) | 275 |
| BmrFI | CCNGG | 2 cut(s) | 163, 330 |
| BmsI | GCATC | 1 cut(s) | 358 |
| BpmI | CTGGAG | 1 cut(s) | 266 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 281 |
| BpuMI | CCSGG | 1 cut(s) | 163 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 239, 269 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 305 |
| BseBI | CCWGG | 1 cut(s) | 330 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 305 |
| BseMII | CTCAG | 1 cut(s) | 145 |
| BseRI | GAGGAG | 2 cut(s) | 443, 446 |
| BseXI | GCAGC | 1 cut(s) | 324 |
| Bsh1236I | CGCG | 1 cut(s) | 168 |
| BshFI | GGCC | 4 cut(s) | 225, 328, 412, 441 |
| BsiHKAI | GWGCWC | 1 cut(s) | 388 |
| BsiSI | CCGG | 2 cut(s) | 163, 357 |
| BslFI | GGGAC | 1 cut(s) | 287 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 305 |
| BsmFI | GGGAC | 1 cut(s) | 287 |
| BsnI | GGCC | 4 cut(s) | 225, 328, 412, 441 |
| Bsp1286I | GDGCHC | 1 cut(s) | 388 |
| Bsp143I | GATC | 3 cut(s) | 73, 151, 332 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 281 |
| BspACI | CCGC | 4 cut(s) | 140, 149, 288, 344 |
| BspANI | GGCC | 4 cut(s) | 225, 328, 412, 441 |
| BspCNI | CTCAG | 1 cut(s) | 144 |
| BspFNI | CGCG | 1 cut(s) | 168 |
| BspHI | TCATGA | 1 cut(s) | 393 |
| BspLI | GGNNCC | 1 cut(s) | 275 |
| BspMAI | CTGCAG | 1 cut(s) | 418 |
| BspPI | GGATC | 3 cut(s) | 81, 159, 340 |
| BssMI | GATC | 3 cut(s) | 73, 151, 332 |
| Bst2UI | CCWGG | 1 cut(s) | 330 |
| Bst4CI | ACNGT | 3 cut(s) | 206, 308, 401 |
| Bst6I | CTCTTC | 2 cut(s) | 33, 112 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 186 |
| BstC8I | GCNNGC | 2 cut(s) | 213, 414 |
| BstDEI | CTNAG | 3 cut(s) | 35, 131, 281 |
| BstFNI | CGCG | 1 cut(s) | 168 |
| BstH2I | RGCGCY | 1 cut(s) | 342 |
| BstHHI | GCGC | 2 cut(s) | 168, 341 |
| BstKTI | GATC | 3 cut(s) | 76, 154, 335 |
| BstMBI | GATC | 3 cut(s) | 73, 151, 332 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 186, 362 |
| BstNI | CCWGG | 1 cut(s) | 330 |
| BstSCI | CCNGG | 2 cut(s) | 161, 328 |
| BstSFI | CTRYAG | 3 cut(s) | 144, 202, 414 |
| BstUI | CGCG | 1 cut(s) | 168 |
| BstV1I | GCAGC | 1 cut(s) | 324 |
| BstX2I | RGATCY | 1 cut(s) | 73 |
| BstYI | RGATCY | 1 cut(s) | 73 |
| BsuRI | GGCC | 4 cut(s) | 225, 328, 412, 441 |
| BtrI | CACGTC | 1 cut(s) | 350 |
| BtsIMutI | CAGTG | 1 cut(s) | 139 |
| Cac8I | GCNNGC | 2 cut(s) | 213, 414 |
| CaiI | CAGNNNCTG | 1 cut(s) | 371 |
| CciI | TCATGA | 1 cut(s) | 393 |
| CfoI | GCGC | 2 cut(s) | 168, 341 |
| Cfr13I | GGNCC | 2 cut(s) | 274, 296 |
| CviAII | CATG | 1 cut(s) | 394 |
| DdeI | CTNAG | 3 cut(s) | 35, 131, 281 |
| DpnI | GATC | 3 cut(s) | 75, 153, 334 |
| DpnII | GATC | 3 cut(s) | 73, 151, 332 |
| EaeI | YGGCCR | 2 cut(s) | 326, 439 |
| Eam1104I | CTCTTC | 2 cut(s) | 33, 112 |
| EarI | CTCTTC | 2 cut(s) | 33, 112 |
| EciI | GGCGGA | 2 cut(s) | 129, 277 |
| Ecl136II | GAGCTC | 1 cut(s) | 386 |
| Eco147I | AGGCCT | 1 cut(s) | 412 |
| Eco24I | GRGCYC | 1 cut(s) | 388 |
| Eco47I | GGWCC | 2 cut(s) | 274, 296 |
| Eco53kI | GAGCTC | 1 cut(s) | 386 |
| EcoICRI | GAGCTC | 1 cut(s) | 386 |
| EcoRII | CCWGG | 1 cut(s) | 328 |
| EcoT38I | GRGCYC | 1 cut(s) | 388 |
| FaeI | CATG | 1 cut(s) | 397 |
| FaiI | YATR | 3 cut(s) | 390, 395, 408 |
| FaqI | GGGAC | 1 cut(s) | 287 |
| FatI | CATG | 1 cut(s) | 393 |
| FauI | CCCGC | 1 cut(s) | 351 |
| Fnu4HI | GCNGC | 1 cut(s) | 313 |
| FriOI | GRGCYC | 1 cut(s) | 388 |
| Fsp4HI | GCNGC | 1 cut(s) | 313 |
| GlaI | GCGC | 2 cut(s) | 167, 340 |
| GluI | GCNGC | 1 cut(s) | 313 |
| GsuI | CTGGAG | 1 cut(s) | 266 |
| HaeII | RGCGCY | 1 cut(s) | 342 |
| HaeIII | GGCC | 4 cut(s) | 225, 328, 412, 441 |
| HapII | CCGG | 2 cut(s) | 163, 357 |
| HhaI | GCGC | 2 cut(s) | 168, 341 |
| Hin1II | CATG | 1 cut(s) | 397 |
| Hin6I | GCGC | 2 cut(s) | 166, 339 |
| HinP1I | GCGC | 2 cut(s) | 166, 339 |
| HpaII | CCGG | 2 cut(s) | 163, 357 |
| Hpy166II | GTNNAC | 1 cut(s) | 120 |
| Hpy188I | TCNGA | 2 cut(s) | 221, 296 |
| Hpy188III | TCNNGA | 3 cut(s) | 10, 83, 394 |
| Hpy8I | GTNNAC | 1 cut(s) | 120 |
| Hpy99I | CGWCG | 1 cut(s) | 296 |
| HpyCH4III | ACNGT | 3 cut(s) | 206, 308, 401 |
| HpyCH4IV | ACGT | 2 cut(s) | 254, 349 |
| HpyCH4V | TGCA | 2 cut(s) | 180, 416 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 186, 362 |
| HpyF3I | CTNAG | 3 cut(s) | 35, 131, 281 |
| HpySE526I | ACGT | 2 cut(s) | 254, 349 |
| Hsp92II | CATG | 1 cut(s) | 397 |
| HspAI | GCGC | 2 cut(s) | 166, 339 |
| Kzo9I | GATC | 3 cut(s) | 73, 151, 332 |
| LmnI | GCTCC | 3 cut(s) | 247, 290, 383 |
| Lsp1109I | GCAGC | 1 cut(s) | 324 |
| LweI | GCATC | 1 cut(s) | 358 |
| MaeII | ACGT | 2 cut(s) | 254, 349 |
| MalI | GATC | 3 cut(s) | 75, 153, 334 |
| MboI | GATC | 3 cut(s) | 73, 151, 332 |
| MboII | GAAGA | 3 cut(s) | 20, 93, 99 |
| MflI | RGATCY | 1 cut(s) | 73 |
| MhlI | GDGCHC | 1 cut(s) | 388 |
| MlsI | TGGCCA | 1 cut(s) | 441 |
| MluNI | TGGCCA | 1 cut(s) | 441 |
| MmeI | TCCRAC | 1 cut(s) | 274 |
| MnlI | CCTC | 6 cut(s) | 115, 121, 215, 309, 421, 424 |
| Mox20I | TGGCCA | 1 cut(s) | 441 |
| MscI | TGGCCA | 1 cut(s) | 441 |
| MseI | TTAA | 1 cut(s) | 458 |
| MslI | CAYNNNNRTG | 2 cut(s) | 231, 306 |
| Msp20I | TGGCCA | 1 cut(s) | 441 |
| MspA1I | CMGCKG | 1 cut(s) | 64 |
| MspI | CCGG | 2 cut(s) | 163, 357 |
| MspR9I | CCNGG | 2 cut(s) | 163, 330 |
| MvaI | CCWGG | 1 cut(s) | 330 |
| MvnI | CGCG | 1 cut(s) | 168 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 186, 362 |
| NciI | CCSGG | 1 cut(s) | 163 |
| NdeII | GATC | 3 cut(s) | 73, 151, 332 |
| NlaIII | CATG | 1 cut(s) | 397 |
| NlaIV | GGNNCC | 1 cut(s) | 275 |
| PagI | TCATGA | 1 cut(s) | 393 |
| PceI | AGGCCT | 1 cut(s) | 412 |
| PkrI | GCNGC | 1 cut(s) | 314 |
| Psp124BI | GAGCTC | 1 cut(s) | 388 |
| Psp1406I | AACGTT | 1 cut(s) | 254 |
| Psp6I | CCWGG | 1 cut(s) | 328 |
| PspGI | CCWGG | 1 cut(s) | 328 |
| PspN4I | GGNNCC | 1 cut(s) | 275 |
| PspPI | GGNCC | 2 cut(s) | 274, 296 |
| PstI | CTGCAG | 1 cut(s) | 418 |
| PstNI | CAGNNNCTG | 1 cut(s) | 371 |
| PsuI | RGATCY | 1 cut(s) | 73 |
| PvuII | CAGCTG | 1 cut(s) | 64 |
| RseI | CAYNNNNRTG | 2 cut(s) | 231, 306 |
| SacI | GAGCTC | 1 cut(s) | 388 |
| SaqAI | TTAA | 1 cut(s) | 458 |
| SatI | GCNGC | 1 cut(s) | 313 |
| Sau3AI | GATC | 3 cut(s) | 73, 151, 332 |
| Sau96I | GGNCC | 2 cut(s) | 274, 296 |
| ScrFI | CCNGG | 2 cut(s) | 163, 330 |
| SduI | GDGCHC | 1 cut(s) | 388 |
| SfaNI | GCATC | 1 cut(s) | 358 |
| SfcI | CTRYAG | 3 cut(s) | 144, 202, 414 |
| SinI | GGWCC | 2 cut(s) | 274, 296 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 231, 306 |
| SseBI | AGGCCT | 1 cut(s) | 412 |
| SsiI | CCGC | 4 cut(s) | 140, 149, 288, 344 |
| SstI | GAGCTC | 1 cut(s) | 388 |
| StuI | AGGCCT | 1 cut(s) | 412 |
| StyD4I | CCNGG | 2 cut(s) | 161, 328 |
| TaaI | ACNGT | 3 cut(s) | 206, 308, 401 |
| TaiI | ACGT | 2 cut(s) | 257, 352 |
| TaqI | TCGA | 1 cut(s) | 335 |
| Tru1I | TTAA | 1 cut(s) | 458 |
| Tru9I | TTAA | 1 cut(s) | 458 |
| TscAI | CASTG | 1 cut(s) | 139 |
| TseI | GCWGC | 1 cut(s) | 312 |
| TspDTI | ATGAA | 2 cut(s) | 20, 410 |
| TspRI | CASTG | 1 cut(s) | 139 |
| VpaK11BI | GGWCC | 2 cut(s) | 274, 296 |