Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0030649

Physical Location & Seq

Genomic Coordinates Reverse (-)

47374727 .. 47375770

Gene Structure 1044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009144

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGCTGTAGGAGGCAAAGCAGCTTCTTTGAAGGGAAAGCAGTGCTCAGTCAGAGCGTTGGATATTCTGTTATTCTTGGCTTTGGAGCCTTCTTTGCTATCTTCACATCTTTCCTGTCCAGAACTAACAATTTTTGGAGTTGACTTCAGGGTATGGCTGGAGAACCGGTATGTTGGTTCGAAGTACGCATCCGAATGGTTCAACACAGCCGGAAGAAATGTTAAAACGGGGCTTATAGCTACTGTGATTGTATCTCAGTGGACATGGGCAGCTACAATTTTGCAAAGTTCAAATGTTGCTTGGCAGTATGGAGTAAGCGGACCTTTCTGGTATGCTAGCGGAGCGACTATTCAGGCACGTCCAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006995 GO:0007154 GO:0008150 GO:0008324 GO:0008519 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0015075 GO:0015101 GO:0015203 GO:0015204 GO:0015291 GO:0015293 GO:0015489 GO:0015606 GO:0015695 GO:0015696 GO:0015840 GO:0015846 GO:0015847 GO:0015848 GO:0016020 GO:0016021 GO:0019755 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034220 GO:0042594 GO:0042886 GO:0042887 GO:0043562 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0071496 GO:0071702 GO:0071705 GO:0071918 GO:0071944 GO:0072488 GO:0098655 GO:1902047 GO:1903711

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSF

Protein Analysis

123

Amino Acids

13.29

Weight (kDa)

9.34

Isoelectric Point (pI)

32.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030649)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000009144
rosa_multiflora	Rmu_sc0001524.1_g000014

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	318, 339
AcuI	CTGAAG	1 cut(s)	130
AfaI	GTAC	1 cut(s)	185
AgeI	ACCGGT	1 cut(s)	165
AgsI	TTSAA	3 cut(s)	31, 202, 291
AjiI	CACGTC	1 cut(s)	359
AluBI	AGCT	4 cut(s)	23, 239, 272, 366
AluI	AGCT	4 cut(s)	23, 239, 272, 366
Alw21I	GWGCWC	1 cut(s)	47
ApeKI	GCWGC	2 cut(s)	20, 269
AsiGI	ACCGGT	1 cut(s)	165
AspS9I	GGNCC	1 cut(s)	320
AsuII	TTCGAA	1 cut(s)	179
AsuNHI	GCTAGC	1 cut(s)	335
AvaII	GGWCC	1 cut(s)	320
Bbv12I	GWGCWC	1 cut(s)	47
BbvI	GCAGC	2 cut(s)	32, 281
BfaI	CTAG	1 cut(s)	336
BfmI	CTRYAG	1 cut(s)	6
BisI	GCNGC	2 cut(s)	21, 270
BlsI	GCNGC	2 cut(s)	22, 271
Bme18I	GGWCC	1 cut(s)	320
BmgBI	CACGTC	1 cut(s)	359
BmgT120I	GGNCC	1 cut(s)	320
BmiI	GGNNCC	1 cut(s)	87
BmsI	GCATC	1 cut(s)	197
BmtI	GCTAGC	1 cut(s)	339
BpmI	CTGGAG	1 cut(s)	179
Bpu14I	TTCGAA	1 cut(s)	179
BsaWI	WCCGGW	1 cut(s)	165
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bse118I	RCCGGY	1 cut(s)	165
BseGI	GGATG	1 cut(s)	188
BseMII	CTCAG	2 cut(s)	60, 269
BseXI	GCAGC	2 cut(s)	32, 281
BshTI	ACCGGT	1 cut(s)	165
BsiHKAI	GWGCWC	1 cut(s)	47
BsiSI	CCGG	2 cut(s)	166, 210
Bsp119I	TTCGAA	1 cut(s)	179
Bsp1286I	GDGCHC	1 cut(s)	47
BspACI	CCGC	2 cut(s)	318, 339
BspCNI	CTCAG	2 cut(s)	59, 268
BspLI	GGNNCC	1 cut(s)	87
BspOI	GCTAGC	1 cut(s)	339
BspT104I	TTCGAA	1 cut(s)	179
BsrFI	RCCGGY	1 cut(s)	165
BssAI	RCCGGY	1 cut(s)	165
Bst4CI	ACNGT	1 cut(s)	244
BstBI	TTCGAA	1 cut(s)	179
BstC8I	GCNNGC	1 cut(s)	337
BstDEI	CTNAG	2 cut(s)	46, 255
BstF5I	GGATG	1 cut(s)	188
BstMWI	GCNNNNNNNGC	2 cut(s)	94, 341
BstSFI	CTRYAG	1 cut(s)	6
BstV1I	GCAGC	2 cut(s)	32, 281
BtrI	CACGTC	1 cut(s)	359
BtsCI	GGATG	1 cut(s)	188
BtsI	GCAGTG	1 cut(s)	47
BtsIMutI	CAGTG	2 cut(s)	47, 263
Cac8I	GCNNGC	1 cut(s)	337
Cfr10I	RCCGGY	1 cut(s)	165
Cfr13I	GGNCC	1 cut(s)	320
Csp6I	GTAC	1 cut(s)	184
CspAI	ACCGGT	1 cut(s)	165
CviAII	CATG	1 cut(s)	264
CviQI	GTAC	1 cut(s)	184
DdeI	CTNAG	2 cut(s)	46, 255
Eco47I	GGWCC	1 cut(s)	320
Eco57I	CTGAAG	1 cut(s)	130
FaeI	CATG	1 cut(s)	267
FaiI	YATR	6 cut(s)	154, 171, 236, 265, 309, 333
FalI	AAGNNNNNCTT	2 cut(s)	307, 339
FatI	CATG	1 cut(s)	263
Fnu4HI	GCNGC	2 cut(s)	21, 270
FokI	GGATG	1 cut(s)	175
Fsp4HI	GCNGC	2 cut(s)	21, 270
FspBI	CTAG	1 cut(s)	336
GluI	GCNGC	2 cut(s)	21, 270
GsuI	CTGGAG	1 cut(s)	179
HapII	CCGG	2 cut(s)	166, 210
Hin1II	CATG	1 cut(s)	267
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HpaII	CCGG	2 cut(s)	166, 210
Hpy166II	GTNNAC	2 cut(s)	142, 261
Hpy188I	TCNGA	2 cut(s)	53, 193
Hpy188III	TCNNGA	1 cut(s)	119
Hpy8I	GTNNAC	2 cut(s)	142, 261
HpyAV	CCTTC	2 cut(s)	25, 99
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4IV	ACGT	1 cut(s)	358
HpyCH4V	TGCA	1 cut(s)	283
HpyF10VI	GCNNNNNNNGC	2 cut(s)	94, 341
HpyF3I	CTNAG	2 cut(s)	46, 255
HpySE526I	ACGT	1 cut(s)	358
Hsp92II	CATG	1 cut(s)	267
LmnI	GCTCC	2 cut(s)	85, 341
LpnPI	CCDG	8 cut(s)	127, 132, 133, 143, 179, 223, 313, 338
Lsp1109I	GCAGC	2 cut(s)	32, 281
LweI	GCATC	1 cut(s)	197
MaeI	CTAG	1 cut(s)	336
MaeII	ACGT	1 cut(s)	358
MboII	GAAGA	2 cut(s)	93, 225
MhlI	GDGCHC	1 cut(s)	47
MluCI	AATT	2 cut(s)	129, 276
MmeI	TCCRAC	1 cut(s)	39
MnlI	CCTC	1 cut(s)	5
MseI	TTAA	1 cut(s)	222
MslI	CAYNNNNRTG	1 cut(s)	193
MspI	CCGG	2 cut(s)	166, 210
MwoI	GCNNNNNNNGC	2 cut(s)	94, 341
NheI	GCTAGC	1 cut(s)	335
NlaIII	CATG	1 cut(s)	267
NlaIV	GGNNCC	1 cut(s)	87
NspV	TTCGAA	1 cut(s)	179
PinAI	ACCGGT	1 cut(s)	165
PkrI	GCNGC	2 cut(s)	22, 271
PspN4I	GGNNCC	1 cut(s)	87
PspPI	GGNCC	1 cut(s)	320
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
RseI	CAYNNNNRTG	1 cut(s)	193
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	2 cut(s)	21, 270
Sau96I	GGNCC	1 cut(s)	320
SduI	GDGCHC	1 cut(s)	47
SetI	ASST	6 cut(s)	25, 241, 274, 325, 361, 368
SfaNI	GCATC	1 cut(s)	197
SfcI	CTRYAG	1 cut(s)	6
SfuI	TTCGAA	1 cut(s)	179
SinI	GGWCC	1 cut(s)	320
SmiMI	CAYNNNNRTG	1 cut(s)	193
Sse9I	AATT	2 cut(s)	129, 276
SsiI	CCGC	2 cut(s)	318, 339
SspMI	CTAG	1 cut(s)	336
TaaI	ACNGT	1 cut(s)	244
TaiI	ACGT	1 cut(s)	361
TaqI	TCGA	1 cut(s)	179
TasI	AATT	2 cut(s)	129, 276
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TscAI	CASTG	2 cut(s)	47, 263
TseI	GCWGC	2 cut(s)	20, 269
TspRI	CASTG	2 cut(s)	47, 263
VpaK11BI	GGWCC	1 cut(s)	320
XspI	CTAG	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.