Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001524.1

Orthogroup ID

OG0030649

Physical Location & Seq

Genomic Coordinates Reverse (-)

62583 .. 63698

Gene Structure 1116 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001524.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

atggcaagctccgggtcacggtgtccgccgttcgacttttccggcaagtactacgacgttgtgtctggagatggctgtaggaggcaaagcagcttctttgaagggaaagcagtgctcagtcagagcgttggatattctgttattcttggctttggagccttctttgcaatcttcacatctttcctggtatcgctggagaagcggtatgttggttcgaagtacacatccgaatggttcaacacagccggaagaaatgttaaaacggggcttatagctagtgtgattgtatctcagtggacatgggcagctacaattttgcaaagttcaaatgttgcttggcagaatggagtaagtggacctttctggtatgctagcggagcgactattcaggcacgtccaagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006995 GO:0007154 GO:0008150 GO:0008324 GO:0008519 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0015075 GO:0015101 GO:0015203 GO:0015204 GO:0015291 GO:0015293 GO:0015489 GO:0015606 GO:0015695 GO:0015696 GO:0015840 GO:0015846 GO:0015847 GO:0015848 GO:0016020 GO:0016021 GO:0019755 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034220 GO:0042594 GO:0042886 GO:0042887 GO:0043562 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0071496 GO:0071702 GO:0071705 GO:0071918 GO:0071944 GO:0072488 GO:0098655 GO:1902047 GO:1903711

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSF

Protein Analysis

134

Amino Acids

14.54

Weight (kDa)

9.47

Isoelectric Point (pI)

45.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030649)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000009144
rosa_multiflora	Rmu_sc0001524.1_g000014

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	26, 202, 375
AfaI	GTAC	2 cut(s)	50, 221
AfiI	CCNNNNNNNGG	1 cut(s)	18
AgsI	TTSAA	3 cut(s)	101, 238, 327
AhdI	GACNNNNNGTC	1 cut(s)	61
AjiI	CACGTC	1 cut(s)	395
AjnI	CCWGG	1 cut(s)	183
AluBI	AGCT	5 cut(s)	9, 93, 275, 308, 402
AluI	AGCT	5 cut(s)	9, 93, 275, 308, 402
Alw21I	GWGCWC	1 cut(s)	117
ApeKI	GCWGC	2 cut(s)	90, 305
AspS9I	GGNCC	1 cut(s)	356
AsuC2I	CCSGG	1 cut(s)	13
AsuII	TTCGAA	1 cut(s)	215
AsuNHI	GCTAGC	1 cut(s)	371
AvaII	GGWCC	1 cut(s)	356
Bbv12I	GWGCWC	1 cut(s)	117
BbvI	GCAGC	2 cut(s)	102, 317
BccI	CCATC	1 cut(s)	65
BceAI	ACGGC	1 cut(s)	13
BciT130I	CCWGG	1 cut(s)	185
BcnI	CCSGG	1 cut(s)	13
BfaI	CTAG	2 cut(s)	276, 372
BfmI	CTRYAG	1 cut(s)	76
BisI	GCNGC	2 cut(s)	91, 306
BlsI	GCNGC	2 cut(s)	92, 307
BmcAI	AGTACT	1 cut(s)	50
Bme1390I	CCNGG	2 cut(s)	13, 185
Bme18I	GGWCC	1 cut(s)	356
BmeRI	GACNNNNNGTC	1 cut(s)	61
BmgBI	CACGTC	1 cut(s)	395
BmgT120I	GGNCC	1 cut(s)	356
BmiI	GGNNCC	1 cut(s)	157
BmrFI	CCNGG	2 cut(s)	13, 185
BmtI	GCTAGC	1 cut(s)	375
BpmI	CTGGAG	2 cut(s)	87, 215
Bpu14I	TTCGAA	1 cut(s)	215
BpuMI	CCSGG	1 cut(s)	13
BsaXI	ACNNNNNCTCC	2 cut(s)	188, 218
Bsc4I	CCNNNNNNNGG	1 cut(s)	18
BseBI	CCWGG	1 cut(s)	185
BseGI	GGATG	1 cut(s)	224
BseLI	CCNNNNNNNGG	1 cut(s)	18
BseMII	CTCAG	2 cut(s)	130, 305
BseXI	GCAGC	2 cut(s)	102, 317
BsiHKAI	GWGCWC	1 cut(s)	117
BsiSI	CCGG	3 cut(s)	12, 42, 246
BslI	CCNNNNNNNGG	1 cut(s)	18
Bsp119I	TTCGAA	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	117
BspACI	CCGC	3 cut(s)	26, 202, 375
BspCNI	CTCAG	2 cut(s)	129, 304
BspLI	GGNNCC	1 cut(s)	157
BspOI	GCTAGC	1 cut(s)	375
BspT104I	TTCGAA	1 cut(s)	215
Bst2UI	CCWGG	1 cut(s)	185
Bst4CI	ACNGT	1 cut(s)	21
BstBI	TTCGAA	1 cut(s)	215
BstC8I	GCNNGC	2 cut(s)	7, 373
BstDEI	CTNAG	2 cut(s)	116, 291
BstF5I	GGATG	1 cut(s)	224
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 199, 377
BstNI	CCWGG	1 cut(s)	185
BstSCI	CCNGG	2 cut(s)	11, 183
BstSFI	CTRYAG	1 cut(s)	76
BstV1I	GCAGC	2 cut(s)	102, 317
BtrI	CACGTC	1 cut(s)	395
BtsCI	GGATG	1 cut(s)	224
BtsI	GCAGTG	1 cut(s)	117
BtsIMutI	CAGTG	2 cut(s)	117, 299
Cac8I	GCNNGC	2 cut(s)	7, 373
Cfr13I	GGNCC	1 cut(s)	356
Csp6I	GTAC	2 cut(s)	49, 220
CviAII	CATG	1 cut(s)	300
CviQI	GTAC	2 cut(s)	49, 220
DdeI	CTNAG	2 cut(s)	116, 291
DriI	GACNNNNNGTC	1 cut(s)	61
Eam1105I	GACNNNNNGTC	1 cut(s)	61
EciI	GGCGGA	1 cut(s)	15
Eco47I	GGWCC	1 cut(s)	356
EcoRII	CCWGG	1 cut(s)	183
FaeI	CATG	1 cut(s)	303
FaiI	YATR	4 cut(s)	207, 272, 301, 369
FalI	AAGNNNNNCTT	2 cut(s)	343, 375
FatI	CATG	1 cut(s)	299
Fnu4HI	GCNGC	2 cut(s)	91, 306
FokI	GGATG	1 cut(s)	211
Fsp4HI	GCNGC	2 cut(s)	91, 306
FspBI	CTAG	2 cut(s)	276, 372
GluI	GCNGC	2 cut(s)	91, 306
GsuI	CTGGAG	2 cut(s)	87, 215
HapII	CCGG	3 cut(s)	12, 42, 246
Hin1II	CATG	1 cut(s)	303
HpaII	CCGG	3 cut(s)	12, 42, 246
Hpy166II	GTNNAC	3 cut(s)	222, 297, 356
Hpy188I	TCNGA	2 cut(s)	123, 229
Hpy188III	TCNNGA	1 cut(s)	66
Hpy8I	GTNNAC	3 cut(s)	222, 297, 356
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	2 cut(s)	95, 169
HpyCH4III	ACNGT	1 cut(s)	21
HpyCH4IV	ACGT	2 cut(s)	57, 394
HpyCH4V	TGCA	2 cut(s)	167, 319
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 199, 377
HpyF3I	CTNAG	2 cut(s)	116, 291
HpySE526I	ACGT	2 cut(s)	57, 394
Hsp92II	CATG	1 cut(s)	303
LmnI	GCTCC	3 cut(s)	14, 155, 377
LpnPI	CCDG	9 cut(s)	25, 51, 55, 170, 179, 197, 259, 349, 374
Lsp1109I	GCAGC	2 cut(s)	102, 317
MaeI	CTAG	2 cut(s)	276, 372
MaeII	ACGT	2 cut(s)	57, 394
MaeIII	GTNAC	1 cut(s)	15
MboII	GAAGA	2 cut(s)	163, 261
MhlI	GDGCHC	1 cut(s)	117
MluCI	AATT	1 cut(s)	312
MmeI	TCCRAC	1 cut(s)	109
MnlI	CCTC	1 cut(s)	75
MseI	TTAA	1 cut(s)	258
MslI	CAYNNNNRTG	1 cut(s)	229
MspI	CCGG	3 cut(s)	12, 42, 246
MspR9I	CCNGG	2 cut(s)	13, 185
MvaI	CCWGG	1 cut(s)	185
MwoI	GCNNNNNNNGC	3 cut(s)	164, 199, 377
NciI	CCSGG	1 cut(s)	13
NheI	GCTAGC	1 cut(s)	371
NlaIII	CATG	1 cut(s)	303
NlaIV	GGNNCC	1 cut(s)	157
NmuCI	GTSAC	1 cut(s)	15
NspV	TTCGAA	1 cut(s)	215
PkrI	GCNGC	2 cut(s)	92, 307
Psp6I	CCWGG	1 cut(s)	183
PspGI	CCWGG	1 cut(s)	183
PspN4I	GGNNCC	1 cut(s)	157
PspPI	GGNCC	1 cut(s)	356
RsaI	GTAC	2 cut(s)	50, 221
RsaNI	GTAC	2 cut(s)	49, 220
RseI	CAYNNNNRTG	1 cut(s)	229
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	2 cut(s)	91, 306
Sau96I	GGNCC	1 cut(s)	356
ScaI	AGTACT	1 cut(s)	50
ScrFI	CCNGG	2 cut(s)	13, 185
SduI	GDGCHC	1 cut(s)	117
SetI	ASST	8 cut(s)	11, 60, 95, 277, 310, 361, 397, 404
SfcI	CTRYAG	1 cut(s)	76
SfuI	TTCGAA	1 cut(s)	215
SinI	GGWCC	1 cut(s)	356
SmiMI	CAYNNNNRTG	1 cut(s)	229
Sse9I	AATT	1 cut(s)	312
SsiI	CCGC	3 cut(s)	26, 202, 375
SspMI	CTAG	2 cut(s)	276, 372
StyD4I	CCNGG	2 cut(s)	11, 183
TaaI	ACNGT	1 cut(s)	21
TaiI	ACGT	2 cut(s)	60, 397
TaqI	TCGA	2 cut(s)	33, 215
TasI	AATT	1 cut(s)	312
TatI	WGTACW	2 cut(s)	48, 219
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	2 cut(s)	117, 299
TseFI	GTSAC	1 cut(s)	15
TseI	GCWGC	2 cut(s)	90, 305
Tsp45I	GTSAC	1 cut(s)	15
TspRI	CASTG	2 cut(s)	117, 299
VpaK11BI	GGWCC	1 cut(s)	356
XspI	CTAG	2 cut(s)	276, 372
ZrmI	AGTACT	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.