RLG00000009754

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0024901
Physical Location & Seq
Reverse (-)
57369934 .. 57370949
1016 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009754

Sequence Viewer

Length: 309 bp
ATGCGCAATGATGGTGCCCCCAGCATTCCCTCTGACTTAAAGAAGACATGCTGCATTGTTGTTGATCTTAGTTGTCGAACTTTGGTGGATGTGAATGTTGAGGACTTTATCTTGGATGAGCTCATAAAGTTTACCACTGAGAGGATTGGATCAAGGATTGGATTTGAAAATTTTTCTGTGTTTGTTATAATGTTATTCAACAAGAAACAACTACAAAAGCTGGAGGGGCATACTCGAAATAAGGAATCACAACGTGCCGCTCACAACTCTCCCACCTCCATGATCAAAATAGTTAGAAAGTGGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

103

Amino Acids

11.71

Weight (kDa)

9.18

Isoelectric Point (pI)

36.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024901)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0486951
rosa_laevigata RLG00000009754
rosa_samantha Rh4BG042900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 188
Acc16I TGCGCA 1 cut(s) 5
AccB1I GGYRCC 1 cut(s) 14
AccBSI CCGCTC 1 cut(s) 260
AciI CCGC 1 cut(s) 258
AclWI GGATC 1 cut(s) 157
AcsI RAATTY 1 cut(s) 169
AdeI CACNNNGTG 1 cut(s) 254
AfiI CCNNNNNNNGG 1 cut(s) 141
AgsI TTSAA 2 cut(s) 167, 199
AluBI AGCT 2 cut(s) 121, 220
AluI AGCT 2 cut(s) 121, 220
Alw21I GWGCWC 1 cut(s) 123
AlwI GGATC 1 cut(s) 157
ApeKI GCWGC 1 cut(s) 51
ApoI RAATTY 1 cut(s) 169
AspLEI GCGC 1 cut(s) 6
BaeGI GKGCMC 1 cut(s) 19
BanI GGYRCC 1 cut(s) 14
BanII GRGCYC 1 cut(s) 123
BbsI GAAGAC 1 cut(s) 50
Bbv12I GWGCWC 1 cut(s) 123
BbvI GCAGC 1 cut(s) 38
BccI CCATC 1 cut(s) 5
BclI TGATCA 1 cut(s) 282
BisI GCNGC 2 cut(s) 52, 258
BlsI GCNGC 2 cut(s) 53, 259
BmiI GGNNCC 1 cut(s) 16
BpiI GAAGAC 1 cut(s) 50
BpmI CTGGAG 1 cut(s) 242
Bsc4I CCNNNNNNNGG 1 cut(s) 141
Bse3DI GCAATG 1 cut(s) 13
BseGI GGATG 2 cut(s) 94, 121
BseLI CCNNNNNNNGG 1 cut(s) 141
BseMI GCAATG 1 cut(s) 13
BseMII CTCAG 1 cut(s) 129
BseSI GKGCMC 1 cut(s) 19
BseXI GCAGC 1 cut(s) 38
BseYI CCCAGC 1 cut(s) 20
BshNI GGYRCC 1 cut(s) 14
BsiHKAI GWGCWC 1 cut(s) 123
BslI CCNNNNNNNGG 1 cut(s) 141
BsmI GAATGC 1 cut(s) 24
Bsp1286I GDGCHC 2 cut(s) 19, 123
Bsp143I GATC 3 cut(s) 64, 149, 282
BspACI CCGC 1 cut(s) 258
BspCNI CTCAG 1 cut(s) 130
BspLI GGNNCC 1 cut(s) 16
BspPI GGATC 1 cut(s) 157
BspT107I GGYRCC 1 cut(s) 14
BsrBI CCGCTC 1 cut(s) 260
BsrDI GCAATG 1 cut(s) 13
BssMI GATC 3 cut(s) 64, 149, 282
BstDEI CTNAG 2 cut(s) 68, 138
BstF5I GGATG 2 cut(s) 94, 121
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 3 cut(s) 67, 152, 285
BstMBI GATC 3 cut(s) 64, 149, 282
BstMWI GCNNNNNNNGC 1 cut(s) 226
BstNSI RCATGY 1 cut(s) 51
BstSLI GKGCMC 1 cut(s) 19
BstV1I GCAGC 1 cut(s) 38
BstV2I GAAGAC 1 cut(s) 50
BtsCI GGATG 2 cut(s) 94, 121
BtsIMutI CAGTG 1 cut(s) 135
CfoI GCGC 1 cut(s) 6
CviAII CATG 2 cut(s) 48, 280
CviJI RGCY 3 cut(s) 121, 220, 304
CviKI_1 RGCY 3 cut(s) 121, 220, 304
DdeI CTNAG 2 cut(s) 68, 138
DpnI GATC 3 cut(s) 66, 151, 284
DpnII GATC 3 cut(s) 64, 149, 282
DraIII CACNNNGTG 1 cut(s) 254
Ecl136II GAGCTC 1 cut(s) 121
Eco24I GRGCYC 1 cut(s) 123
Eco53kI GAGCTC 1 cut(s) 121
EcoICRI GAGCTC 1 cut(s) 121
EcoT38I GRGCYC 1 cut(s) 123
FaeI CATG 2 cut(s) 51, 283
FaiI YATR 5 cut(s) 49, 125, 188, 231, 281
FatI CATG 2 cut(s) 47, 279
FbaI TGATCA 1 cut(s) 282
Fnu4HI GCNGC 2 cut(s) 52, 258
FokI GGATG 2 cut(s) 101, 128
FriOI GRGCYC 1 cut(s) 123
Fsp4HI GCNGC 2 cut(s) 52, 258
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 1 cut(s) 5
GluI GCNGC 2 cut(s) 52, 258
GsaI CCCAGC 1 cut(s) 24
GsuI CTGGAG 1 cut(s) 242
HhaI GCGC 1 cut(s) 6
Hin1II CATG 2 cut(s) 51, 283
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HinfI GANTC 1 cut(s) 245
Hpy166II GTNNAC 1 cut(s) 132
Hpy188I TCNGA 1 cut(s) 34
Hpy8I GTNNAC 1 cut(s) 132
HpyCH4IV ACGT 1 cut(s) 253
HpyCH4V TGCA 1 cut(s) 54
HpyF10VI GCNNNNNNNGC 1 cut(s) 226
HpyF3I CTNAG 2 cut(s) 68, 138
HpySE526I ACGT 1 cut(s) 253
Hsp92II CATG 2 cut(s) 51, 283
HspAI GCGC 1 cut(s) 4
Ksp22I TGATCA 1 cut(s) 282
Kzo9I GATC 3 cut(s) 64, 149, 282
LpnPI CCDG 2 cut(s) 34, 206
Lsp1109I GCAGC 1 cut(s) 38
MaeII ACGT 1 cut(s) 253
MalI GATC 3 cut(s) 66, 151, 284
MbiI CCGCTC 1 cut(s) 260
MboI GATC 3 cut(s) 64, 149, 282
MboII GAAGA 1 cut(s) 55
MhlI GDGCHC 2 cut(s) 19, 123
MluCI AATT 1 cut(s) 169
MnlI CCTC 5 cut(s) 40, 94, 135, 217, 286
MseI TTAA 1 cut(s) 38
MslI CAYNNNNRTG 1 cut(s) 278
Mva1269I GAATGC 1 cut(s) 24
MwoI GCNNNNNNNGC 1 cut(s) 226
NdeII GATC 3 cut(s) 64, 149, 282
NlaIII CATG 2 cut(s) 51, 283
NlaIV GGNNCC 1 cut(s) 16
NsbI TGCGCA 1 cut(s) 5
NspI RCATGY 1 cut(s) 51
PctI GAATGC 1 cut(s) 24
PfeI GAWTC 1 cut(s) 245
PkrI GCNGC 2 cut(s) 53, 259
PsiI TTATAA 1 cut(s) 188
Psp124BI GAGCTC 1 cut(s) 123
PspFI CCCAGC 1 cut(s) 20
PspN4I GGNNCC 1 cut(s) 16
RseI CAYNNNNRTG 1 cut(s) 278
SacI GAGCTC 1 cut(s) 123
SaqAI TTAA 1 cut(s) 38
SatI GCNGC 2 cut(s) 52, 258
Sau3AI GATC 3 cut(s) 64, 149, 282
SduI GDGCHC 2 cut(s) 19, 123
SetI ASST 4 cut(s) 123, 222, 256, 278
SgeI CNNG 9 cut(s) 33, 60, 124, 165, 214, 233, 246, 266, 292
SmiMI CAYNNNNRTG 1 cut(s) 278
Sse9I AATT 1 cut(s) 169
SsiI CCGC 1 cut(s) 258
SstI GAGCTC 1 cut(s) 123
TaiI ACGT 1 cut(s) 256
TaqI TCGA 2 cut(s) 76, 235
TasI AATT 1 cut(s) 169
TauI GCSGC 1 cut(s) 260
TfiI GAWTC 1 cut(s) 245
Tru1I TTAA 1 cut(s) 38
Tru9I TTAA 1 cut(s) 38
TscAI CASTG 1 cut(s) 142
TseI GCWGC 1 cut(s) 51
TspRI CASTG 1 cut(s) 142
XapI RAATTY 1 cut(s) 169
XceI RCATGY 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.