RLG00000011221

Jacalin-like lectin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0025056
Physical Location & Seq
Forward (+)
7770200 .. 7771613
1414 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011221

Sequence Viewer

Length: 396 bp
ATGGCTCACACACAGTACAGTCATATGACTGGTGGCACTTACATCCCTGCTGGCTACTCACTACTAGTACTCCAGAACTGTGATGTGTTTCTCGCTATAAGACCCAAGGATGACCCCATTACTACAAACCCTGCAGCTTCAGTGCCCAACAAGCTCTTTAGACAGTTTTCTAATTCTGGAGACTCAAGTGATGATGGAATCAGACACATGATTCCAAGAATTGAGAGAATTCCTTCAAAAGTTGAAGGTGTGGTCACATATGGTCCTTGGGGAGGGAGTGGTATTCGACAAATAAAGTTGTCCAGGAACATCGGAGTTTACGATTCCGATGGTGAAGCTATATGGGGAGCCGCACATGGAGGAACTGGAGGATATAAAAGTGACAGGGTCTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

132

Amino Acids

14.14

Weight (kDa)

7.81

Isoelectric Point (pI)

26.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025056)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0301791
rosa_laevigata RLG00000011221
rosa_samantha Rh6CG434900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 351
AcsI RAATTY 1 cut(s) 228
AcuI CTGAAG 1 cut(s) 123
AfaI GTAC 2 cut(s) 17, 69
AfiI CCNNNNNNNGG 1 cut(s) 272
AgsI TTSAA 2 cut(s) 237, 245
AhlI ACTAGT 1 cut(s) 64
AjnI CCWGG 1 cut(s) 302
AluBI AGCT 3 cut(s) 137, 154, 338
AluI AGCT 3 cut(s) 137, 154, 338
Alw26I GTCTC 1 cut(s) 174
AlwNI CAGNNNCTG 1 cut(s) 390
ApeKI GCWGC 1 cut(s) 134
ApoI RAATTY 1 cut(s) 228
Asp700I GAANNNNTTC 1 cut(s) 232
AspS9I GGNCC 1 cut(s) 263
AsuHPI GGTGA 1 cut(s) 344
AvaII GGWCC 1 cut(s) 263
BaeGI GKGCMC 1 cut(s) 147
BbvI GCAGC 1 cut(s) 146
BccI CCATC 2 cut(s) 188, 323
BciT130I CCWGG 1 cut(s) 304
BcoDI GTCTC 1 cut(s) 174
BcuI ACTAGT 1 cut(s) 64
BfaI CTAG 1 cut(s) 65
BfmI CTRYAG 1 cut(s) 132
BisI GCNGC 2 cut(s) 135, 351
BlsI GCNGC 2 cut(s) 136, 352
BmcAI AGTACT 1 cut(s) 69
Bme1390I CCNGG 1 cut(s) 304
Bme18I GGWCC 1 cut(s) 263
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 1 cut(s) 349
BmrFI CCNGG 1 cut(s) 304
BpmI CTGGAG 3 cut(s) 56, 198, 387
BpuEI CTTGAG 1 cut(s) 169
BsaJI CCNNGG 2 cut(s) 105, 266
BsaXI ACNNNNNCTCC 2 cut(s) 54, 84
Bsc4I CCNNNNNNNGG 1 cut(s) 272
Bse1I ACTGG 2 cut(s) 34, 370
BseBI CCWGG 1 cut(s) 304
BseDI CCNNGG 2 cut(s) 105, 266
BseGI GGATG 2 cut(s) 42, 115
BseLI CCNNNNNNNGG 1 cut(s) 272
BseNI ACTGG 2 cut(s) 34, 370
BseSI GKGCMC 1 cut(s) 147
BseXI GCAGC 1 cut(s) 146
BslI CCNNNNNNNGG 1 cut(s) 272
BsmAI GTCTC 1 cut(s) 174
Bsp1286I GDGCHC 1 cut(s) 147
BspACI CCGC 1 cut(s) 351
BspLI GGNNCC 1 cut(s) 349
BspMAI CTGCAG 1 cut(s) 136
BsrI ACTGG 2 cut(s) 34, 370
BssECI CCNNGG 2 cut(s) 105, 266
BssT1I CCWWGG 2 cut(s) 105, 266
Bst2UI CCWGG 1 cut(s) 304
Bst4CI ACNGT 4 cut(s) 15, 20, 80, 165
BstC8I GCNNGC 1 cut(s) 52
BstENI CCTNNNNNAGG 1 cut(s) 270
BstF5I GGATG 2 cut(s) 42, 115
BstMAI GTCTC 1 cut(s) 174
BstMWI GCNNNNNNNGC 1 cut(s) 151
BstNI CCWGG 1 cut(s) 304
BstSCI CCNGG 1 cut(s) 302
BstSFI CTRYAG 1 cut(s) 132
BstSLI GKGCMC 1 cut(s) 147
BstV1I GCAGC 1 cut(s) 146
BtsCI GGATG 2 cut(s) 42, 115
BtsIMutI CAGTG 1 cut(s) 147
Cac8I GCNNGC 1 cut(s) 52
CaiI CAGNNNCTG 1 cut(s) 390
Cfr13I GGNCC 1 cut(s) 263
Csp6I GTAC 2 cut(s) 16, 68
CviAII CATG 2 cut(s) 208, 356
CviJI RGCY 6 cut(s) 5, 54, 137, 154, 338, 350
CviKI_1 RGCY 6 cut(s) 5, 54, 137, 154, 338, 350
CviQI GTAC 2 cut(s) 16, 68
Eco130I CCWWGG 2 cut(s) 105, 266
Eco47I GGWCC 1 cut(s) 263
Eco57I CTGAAG 1 cut(s) 123
EcoNI CCTNNNNNAGG 1 cut(s) 270
EcoRI GAATTC 1 cut(s) 228
EcoRII CCWGG 1 cut(s) 302
EcoT14I CCWWGG 2 cut(s) 105, 266
ErhI CCWWGG 2 cut(s) 105, 266
FaeI CATG 2 cut(s) 211, 359
FatI CATG 2 cut(s) 207, 355
FauNDI CATATG 2 cut(s) 24, 259
Fnu4HI GCNGC 2 cut(s) 135, 351
FokI GGATG 2 cut(s) 29, 122
Fsp4HI GCNGC 2 cut(s) 135, 351
FspBI CTAG 1 cut(s) 65
GluI GCNGC 2 cut(s) 135, 351
GsuI CTGGAG 3 cut(s) 56, 198, 387
Hin1II CATG 2 cut(s) 211, 359
HinfI GANTC 4 cut(s) 182, 198, 211, 323
HphI GGTGA 1 cut(s) 344
Hpy166II GTNNAC 1 cut(s) 319
Hpy188I TCNGA 3 cut(s) 203, 314, 328
Hpy188III TCNNGA 2 cut(s) 73, 177
Hpy8I GTNNAC 1 cut(s) 319
HpyAV CCTTC 2 cut(s) 239, 243
HpyCH4III ACNGT 4 cut(s) 15, 20, 80, 165
HpyCH4V TGCA 1 cut(s) 134
HpyF10VI GCNNNNNNNGC 1 cut(s) 151
Hsp92II CATG 2 cut(s) 211, 359
LmnI GCTCC 1 cut(s) 347
Lsp1109I GCAGC 1 cut(s) 146
MaeI CTAG 1 cut(s) 65
MaeIII GTNAC 2 cut(s) 253, 380
MhlI GDGCHC 1 cut(s) 147
MluCI AATT 3 cut(s) 172, 219, 228
MlyI GAGTC 1 cut(s) 176
MnlI CCTC 3 cut(s) 266, 353, 362
MroXI GAANNNNTTC 1 cut(s) 232
MseI TTAA 1 cut(s) 394
MspR9I CCNGG 1 cut(s) 304
MvaI CCWGG 1 cut(s) 304
MwoI GCNNNNNNNGC 1 cut(s) 151
NdeI CATATG 2 cut(s) 24, 259
NlaIII CATG 2 cut(s) 211, 359
NlaIV GGNNCC 1 cut(s) 349
NmuCI GTSAC 2 cut(s) 253, 380
PcsI WCGNNNNNNNCGW 1 cut(s) 318
PdmI GAANNNNTTC 1 cut(s) 232
PfeI GAWTC 3 cut(s) 198, 211, 323
PflFI GACNNNGTC 1 cut(s) 386
PfoI TCCNGGA 1 cut(s) 302
PkrI GCNGC 2 cut(s) 136, 352
PleI GAGTC 1 cut(s) 176
PpsI GAGTC 1 cut(s) 176
Psp6I CCWGG 1 cut(s) 302
PspGI CCWGG 1 cut(s) 302
PspN4I GGNNCC 1 cut(s) 349
PspPI GGNCC 1 cut(s) 263
PstI CTGCAG 1 cut(s) 136
PstNI CAGNNNCTG 1 cut(s) 390
PsyI GACNNNGTC 1 cut(s) 386
RsaI GTAC 2 cut(s) 17, 69
RsaNI GTAC 2 cut(s) 16, 68
SaqAI TTAA 1 cut(s) 394
SatI GCNGC 2 cut(s) 135, 351
Sau96I GGNCC 1 cut(s) 263
ScaI AGTACT 1 cut(s) 69
SchI GAGTC 1 cut(s) 176
ScrFI CCNGG 1 cut(s) 304
SduI GDGCHC 1 cut(s) 147
SetI ASST 4 cut(s) 139, 156, 250, 340
SfcI CTRYAG 1 cut(s) 132
SinI GGWCC 1 cut(s) 263
SmlI CTYRAG 1 cut(s) 184
SmoI CTYRAG 1 cut(s) 184
SpeI ACTAGT 1 cut(s) 64
Sse9I AATT 3 cut(s) 172, 219, 228
SsiI CCGC 1 cut(s) 351
SspMI CTAG 1 cut(s) 65
StyD4I CCNGG 1 cut(s) 302
StyI CCWWGG 2 cut(s) 105, 266
TaaI ACNGT 4 cut(s) 15, 20, 80, 165
TaqI TCGA 1 cut(s) 286
TasI AATT 3 cut(s) 172, 219, 228
TatI WGTACW 2 cut(s) 15, 67
TauI GCSGC 1 cut(s) 353
TfiI GAWTC 3 cut(s) 198, 211, 323
Tru1I TTAA 1 cut(s) 394
Tru9I TTAA 1 cut(s) 394
TscAI CASTG 1 cut(s) 147
TseFI GTSAC 2 cut(s) 253, 380
TseI GCWGC 1 cut(s) 134
Tsp45I GTSAC 2 cut(s) 253, 380
TspRI CASTG 1 cut(s) 147
Tth111I GACNNNGTC 1 cut(s) 386
VpaK11BI GGWCC 1 cut(s) 263
XagI CCTNNNNNAGG 1 cut(s) 270
XapI RAATTY 1 cut(s) 228
XmnI GAANNNNTTC 1 cut(s) 232
XspI CTAG 1 cut(s) 65
ZrmI AGTACT 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.