Rh6CG434900

Jacalin-like lectin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0025056
Physical Location & Seq
Reverse (-)
61478240 .. 61480756
2517 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG434900.1

Sequence Viewer

Length: 636 bp
ATGGCTCACACACAGTACATTAATATGACTGGGGGCACTGACATCCCTGCTGGCTACTCACTACTCCAAAACTGTGATGTGTTTCTCGCTATAAGACCCAAGGATGACCCCATTACTACAAACCCTGCAGCTTCAGTGCCCAACAAGCTCTTTAGGCAGTTTTCTAATTCTGGAGACTCAAGTGATGATGCAATCAGACACATGATTCCAAGAATTGCGAGAATTCCTTCAAAAGTTGAAGGTGTGGTCACATATGGTCCTTGGGGAGGGAGTGGTGGTTTTGTGTTTGATGATGGAGTTTATTCAGATTCTGATGGTGAAGCTATATGGGGAGCCGCACATGGAGGAACTGGAGGATATAAAAGTGACAGGATAATTTTTGATTATCCGTATGAAATCTTGACTCACATCACAGGAACATATGGTCCTGCAATGGGGATGGGGCCTAATGTGATCAAATCATTGACCATCCACACGACGAAGAAGAAGCATGGGCCATATGGAGAAGAACAAGGAACCCGATTCAGCACTCAAGCTTGGAGAAGGAAAAATTGTTGGAATTCGTGGGAGCACAGGTTTGTTCTTAGATGCTATTGGAGTACATGCCATAGAAATAAAGGTCATAGTAGAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

211

Amino Acids

23.45

Weight (kDa)

8.64

Isoelectric Point (pI)

28.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 101 - 178 1.6e-17 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025056)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0301791
rosa_laevigata RLG00000011221
rosa_samantha Rh6CG434900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 336
AcsI RAATTY 2 cut(s) 222, 559
AcuI CTGAAG 1 cut(s) 117
AfaI GTAC 2 cut(s) 17, 601
AfiI CCNNNNNNNGG 2 cut(s) 266, 434
AgsI TTSAA 2 cut(s) 231, 239
AloI GAACNNNNNNTCC 2 cut(s) 409, 441
AluBI AGCT 4 cut(s) 131, 148, 323, 536
AluI AGCT 4 cut(s) 131, 148, 323, 536
Alw21I GWGCWC 1 cut(s) 573
Alw26I GTCTC 2 cut(s) 168, 624
AlwNI CAGNNNCTG 1 cut(s) 311
AoxI GGCC 2 cut(s) 443, 494
ApeKI GCWGC 1 cut(s) 128
ApoI RAATTY 2 cut(s) 222, 559
AseI ATTAAT 1 cut(s) 21
Asp700I GAANNNNTTC 1 cut(s) 226
AspS9I GGNCC 4 cut(s) 257, 425, 443, 494
AsuHPI GGTGA 1 cut(s) 329
AvaII GGWCC 2 cut(s) 257, 425
BaeGI GKGCMC 2 cut(s) 38, 141
Bbv12I GWGCWC 1 cut(s) 573
BbvI GCAGC 1 cut(s) 140
BccI CCATC 4 cut(s) 287, 308, 433, 476
BclI TGATCA 1 cut(s) 453
BcoDI GTCTC 2 cut(s) 168, 624
BfaI CTAG 1 cut(s) 634
BfmI CTRYAG 1 cut(s) 126
BisI GCNGC 2 cut(s) 129, 336
BlsI GCNGC 2 cut(s) 130, 337
Bme18I GGWCC 2 cut(s) 257, 425
BmgT120I GGNCC 4 cut(s) 257, 425, 443, 494
BmiI GGNNCC 3 cut(s) 334, 444, 517
BmrI ACTGGG 1 cut(s) 39
BmsI GCATC 2 cut(s) 178, 578
BmuI ACTGGG 1 cut(s) 39
BpmI CTGGAG 2 cut(s) 192, 372
BpuEI CTTGAG 2 cut(s) 163, 516
BsaJI CCNNGG 2 cut(s) 99, 260
BsaXI ACNNNNNCTCC 4 cut(s) 262, 292, 560, 590
Bsc4I CCNNNNNNNGG 2 cut(s) 266, 434
Bse1I ACTGG 2 cut(s) 34, 355
Bse3DI GCAATG 1 cut(s) 438
BseDI CCNNGG 2 cut(s) 99, 260
BseGI GGATG 4 cut(s) 42, 109, 444, 468
BseLI CCNNNNNNNGG 2 cut(s) 266, 434
BseMI GCAATG 1 cut(s) 438
BseNI ACTGG 2 cut(s) 34, 355
BseSI GKGCMC 2 cut(s) 38, 141
BseXI GCAGC 1 cut(s) 140
BshFI GGCC 2 cut(s) 445, 496
BsiHKAI GWGCWC 1 cut(s) 573
BslI CCNNNNNNNGG 2 cut(s) 266, 434
BsmAI GTCTC 2 cut(s) 168, 624
BsnI GGCC 2 cut(s) 445, 496
Bsp1286I GDGCHC 3 cut(s) 38, 141, 573
Bsp143I GATC 1 cut(s) 453
BspACI CCGC 1 cut(s) 336
BspANI GGCC 2 cut(s) 445, 496
BspLI GGNNCC 3 cut(s) 334, 444, 517
BspMAI CTGCAG 1 cut(s) 130
BsrDI GCAATG 1 cut(s) 438
BsrI ACTGG 2 cut(s) 34, 355
BssECI CCNNGG 2 cut(s) 99, 260
BssMI GATC 1 cut(s) 453
BssT1I CCWWGG 2 cut(s) 99, 260
Bst4CI ACNGT 2 cut(s) 15, 74
BstC8I GCNNGC 1 cut(s) 52
BstDEI CTNAG 1 cut(s) 584
BstENI CCTNNNNNAGG 1 cut(s) 264
BstF5I GGATG 4 cut(s) 42, 109, 444, 468
BstKTI GATC 1 cut(s) 456
BstMAI GTCTC 2 cut(s) 168, 624
BstMBI GATC 1 cut(s) 453
BstMWI GCNNNNNNNGC 2 cut(s) 145, 154
BstNSI RCATGY 1 cut(s) 606
BstSFI CTRYAG 1 cut(s) 126
BstSLI GKGCMC 2 cut(s) 38, 141
BstV1I GCAGC 1 cut(s) 140
BsuRI GGCC 2 cut(s) 445, 496
BtsCI GGATG 4 cut(s) 42, 109, 444, 468
BtsIMutI CAGTG 2 cut(s) 36, 141
Cac8I GCNNGC 1 cut(s) 52
CaiI CAGNNNCTG 1 cut(s) 311
Cfr13I GGNCC 4 cut(s) 257, 425, 443, 494
Csp6I GTAC 2 cut(s) 16, 600
CviAII CATG 4 cut(s) 202, 341, 491, 603
CviJI RGCY 9 cut(s) 5, 54, 131, 148, 323, 335, 445, 496, 536
CviKI_1 RGCY 9 cut(s) 5, 54, 131, 148, 323, 335, 445, 496, 536
CviQI GTAC 2 cut(s) 16, 600
DdeI CTNAG 1 cut(s) 584
DpnI GATC 1 cut(s) 455
DpnII GATC 1 cut(s) 453
Eco130I CCWWGG 2 cut(s) 99, 260
Eco47I GGWCC 2 cut(s) 257, 425
Eco57I CTGAAG 1 cut(s) 117
EcoNI CCTNNNNNAGG 1 cut(s) 264
EcoO109I RGGNCCY 1 cut(s) 443
EcoRI GAATTC 2 cut(s) 222, 559
EcoT14I CCWWGG 2 cut(s) 99, 260
ErhI CCWWGG 2 cut(s) 99, 260
FaeI CATG 4 cut(s) 205, 344, 494, 606
FatI CATG 4 cut(s) 201, 340, 490, 602
FauNDI CATATG 3 cut(s) 253, 421, 499
FbaI TGATCA 1 cut(s) 453
Fnu4HI GCNGC 2 cut(s) 129, 336
FokI GGATG 4 cut(s) 29, 116, 451, 455
Fsp4HI GCNGC 2 cut(s) 129, 336
FspBI CTAG 1 cut(s) 634
GluI GCNGC 2 cut(s) 129, 336
GsuI CTGGAG 2 cut(s) 192, 372
HaeIII GGCC 2 cut(s) 445, 496
Hin1II CATG 4 cut(s) 205, 344, 494, 606
HindIII AAGCTT 1 cut(s) 534
HinfI GANTC 5 cut(s) 176, 205, 308, 403, 522
HphI GGTGA 1 cut(s) 329
Hpy188I TCNGA 3 cut(s) 197, 307, 313
Hpy188III TCNNGA 2 cut(s) 171, 400
Hpy99I CGWCG 1 cut(s) 481
HpyAV CCTTC 3 cut(s) 233, 237, 537
HpyCH4III ACNGT 2 cut(s) 15, 74
HpyCH4V TGCA 3 cut(s) 128, 191, 431
HpyF10VI GCNNNNNNNGC 2 cut(s) 145, 154
HpyF3I CTNAG 1 cut(s) 584
Hsp92II CATG 4 cut(s) 205, 344, 494, 606
Ksp22I TGATCA 1 cut(s) 453
Kzo9I GATC 1 cut(s) 453
LmnI GCTCC 2 cut(s) 332, 568
Lsp1109I GCAGC 1 cut(s) 140
LweI GCATC 2 cut(s) 178, 578
MaeI CTAG 1 cut(s) 634
MaeIII GTNAC 2 cut(s) 247, 365
MalI GATC 1 cut(s) 455
MboI GATC 1 cut(s) 453
MboII GAAGA 3 cut(s) 493, 496, 518
MhlI GDGCHC 3 cut(s) 38, 141, 573
MluCI AATT 6 cut(s) 166, 213, 222, 375, 550, 559
MlyI GAGTC 2 cut(s) 170, 397
MmeI TCCRAC 1 cut(s) 536
MnlI CCTC 3 cut(s) 260, 338, 347
MroXI GAANNNNTTC 1 cut(s) 226
MseI TTAA 1 cut(s) 21
MslI CAYNNNNRTG 1 cut(s) 23
MwoI GCNNNNNNNGC 2 cut(s) 145, 154
NdeI CATATG 3 cut(s) 253, 421, 499
NdeII GATC 1 cut(s) 453
NlaIII CATG 4 cut(s) 205, 344, 494, 606
NlaIV GGNNCC 3 cut(s) 334, 444, 517
NmuCI GTSAC 2 cut(s) 247, 365
NspI RCATGY 1 cut(s) 606
PdmI GAANNNNTTC 1 cut(s) 226
PfeI GAWTC 3 cut(s) 205, 308, 522
PkrI GCNGC 2 cut(s) 130, 337
PleI GAGTC 2 cut(s) 170, 397
PpsI GAGTC 2 cut(s) 170, 397
PshBI ATTAAT 1 cut(s) 21
PspN4I GGNNCC 3 cut(s) 334, 444, 517
PspPI GGNCC 4 cut(s) 257, 425, 443, 494
PstI CTGCAG 1 cut(s) 130
PstNI CAGNNNCTG 1 cut(s) 311
RsaI GTAC 2 cut(s) 17, 601
RsaNI GTAC 2 cut(s) 16, 600
RseI CAYNNNNRTG 1 cut(s) 23
SaqAI TTAA 1 cut(s) 21
SatI GCNGC 2 cut(s) 129, 336
Sau3AI GATC 1 cut(s) 453
Sau96I GGNCC 4 cut(s) 257, 425, 443, 494
SchI GAGTC 2 cut(s) 170, 397
SduI GDGCHC 3 cut(s) 38, 141, 573
SetI ASST 7 cut(s) 133, 150, 244, 325, 538, 578, 622
SfaNI GCATC 2 cut(s) 178, 578
SfcI CTRYAG 1 cut(s) 126
SinI GGWCC 2 cut(s) 257, 425
SmiMI CAYNNNNRTG 1 cut(s) 23
SmlI CTYRAG 2 cut(s) 178, 531
SmoI CTYRAG 2 cut(s) 178, 531
Sse9I AATT 6 cut(s) 166, 213, 222, 375, 550, 559
SsiI CCGC 1 cut(s) 336
SspMI CTAG 1 cut(s) 634
StyI CCWWGG 2 cut(s) 99, 260
TaaI ACNGT 2 cut(s) 15, 74
TasI AATT 6 cut(s) 166, 213, 222, 375, 550, 559
TatI WGTACW 2 cut(s) 15, 599
TauI GCSGC 1 cut(s) 338
TfiI GAWTC 3 cut(s) 205, 308, 522
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TscAI CASTG 2 cut(s) 43, 141
TseFI GTSAC 2 cut(s) 247, 365
TseI GCWGC 1 cut(s) 128
Tsp45I GTSAC 2 cut(s) 247, 365
TspDTI ATGAA 1 cut(s) 408
TspGWI ACGGA 1 cut(s) 378
TspRI CASTG 2 cut(s) 43, 141
VpaK11BI GGWCC 2 cut(s) 257, 425
VspI ATTAAT 1 cut(s) 21
XagI CCTNNNNNAGG 1 cut(s) 264
XapI RAATTY 2 cut(s) 222, 559
XceI RCATGY 1 cut(s) 606
XmnI GAANNNNTTC 1 cut(s) 226
XspI CTAG 1 cut(s) 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.