Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0030741

Physical Location & Seq

Genomic Coordinates Forward (+)

10635349 .. 10635890

Gene Structure 542 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011574

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGAGGATGAGCAAGAGGCTTCACCGCCCCAAGAAATTTGAGTTTCTCAGCTGGGGCTGGAAGCCGCTGATTGAATTTCTCGAGTCAATTGGGAAGGACACGATGAAGCAGATCTCCCAATACGACGTCGCTAGGATTATCACCGATTACGTCAACCATAGCAAGCTTCTCCACCCGACGAAGAAGAAGAGGATCTCCGATGAGTTCGACGACGACAGTTTAGACGAGGAGGAAGAGGATAAGCAGCAGCAGCAGCAGAGGAAGAAGCTGAAGAGGAGAGCCGCCGCTCTGCATGCTCCTCATTCGGTTTCCGAAAAGCTGCTACGCCGCCGTGATTCGGGAGAATTTGAAGCTAGTGTACCTGAGGAGGTCGGTGGTGGAAGTTCTGCTGAAGCAGGACGAGGCTCAGGTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GYF Plus-3 SWIB

Protein Analysis

139

Amino Acids

15.86

Weight (kDa)

9.12

Isoelectric Point (pI)

67.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030741)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000011574
rosa_multiflora	Rmu_ssc0000372.1_g000081

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	129
AccBSI	CCGCTC	1 cut(s)	287
AciI	CCGC	5 cut(s)	25, 65, 282, 285, 328
AclWI	GGATC	1 cut(s)	200
AcsI	RAATTY	3 cut(s)	35, 74, 344
AcuI	CTGAAG	2 cut(s)	290, 411
AcyI	GRCGYC	1 cut(s)	126
AfaI	GTAC	1 cut(s)	360
AfiI	CCNNNNNNNGG	1 cut(s)	337
AgsI	TTSAA	2 cut(s)	74, 350
AluBI	AGCT	5 cut(s)	51, 166, 268, 319, 353
AluI	AGCT	5 cut(s)	51, 166, 268, 319, 353
AlwI	GGATC	1 cut(s)	200
Ama87I	CYCGRG	1 cut(s)	80
ApeKI	GCWGC	5 cut(s)	244, 247, 250, 253, 319
ApoI	RAATTY	3 cut(s)	35, 74, 344
AsuHPI	GGTGA	2 cut(s)	14, 133
AvaI	CYCGRG	1 cut(s)	80
AxyI	CCTNAGG	1 cut(s)	363
BarI	GAAGNNNNNNTAC	2 cut(s)	342, 374
BbvI	GCAGC	5 cut(s)	256, 259, 262, 265, 306
BceAI	ACGGC	1 cut(s)	315
BfaI	CTAG	2 cut(s)	132, 354
BglII	AGATCT	1 cut(s)	111
BisI	GCNGC	9 cut(s)	65, 245, 248, 251, 254, 282, 285, 320, 328
BlsI	GCNGC	9 cut(s)	66, 246, 249, 252, 255, 283, 286, 321, 329
BmeT110I	CYCGRG	1 cut(s)	80
Bpu10I	CCTNAGC	1 cut(s)	406
BsaHI	GRCGYC	1 cut(s)	126
Bsc4I	CCNNNNNNNGG	1 cut(s)	337
Bse21I	CCTNAGG	1 cut(s)	363
BseGI	GGATG	1 cut(s)	12
BseLI	CCNNNNNNNGG	1 cut(s)	337
BseMII	CTCAG	2 cut(s)	61, 354
BseRI	GAGGAG	4 cut(s)	242, 288, 289, 380
BseXI	GCAGC	5 cut(s)	256, 259, 262, 265, 306
BseYI	CCCAGC	1 cut(s)	51
BsiHKCI	CYCGRG	1 cut(s)	80
BslI	CCNNNNNNNGG	1 cut(s)	337
BsoBI	CYCGRG	1 cut(s)	80
Bsp143I	GATC	2 cut(s)	111, 192
BspACI	CCGC	5 cut(s)	25, 65, 282, 285, 328
BspCNI	CTCAG	2 cut(s)	60, 355
BspPI	GGATC	1 cut(s)	200
BsrBI	CCGCTC	1 cut(s)	287
BssMI	GATC	2 cut(s)	111, 192
BssNI	GRCGYC	1 cut(s)	126
Bst4CI	ACNGT	1 cut(s)	218
Bst6I	CTCTTC	3 cut(s)	182, 228, 266
BstACI	GRCGYC	1 cut(s)	126
BstC8I	GCNNGC	2 cut(s)	164, 294
BstDEI	CTNAG	3 cut(s)	47, 363, 406
BstF5I	GGATG	1 cut(s)	12
BstKTI	GATC	2 cut(s)	114, 195
BstMBI	GATC	2 cut(s)	111, 192
BstMWI	GCNNNNNNNGC	3 cut(s)	250, 253, 293
BstNSI	RCATGY	1 cut(s)	296
BstV1I	GCAGC	5 cut(s)	256, 259, 262, 265, 306
BstX2I	RGATCY	2 cut(s)	111, 192
BstYI	RGATCY	2 cut(s)	111, 192
Bsu36I	CCTNAGG	1 cut(s)	363
BtsCI	GGATG	1 cut(s)	12
Cac8I	GCNNGC	2 cut(s)	164, 294
Csp6I	GTAC	1 cut(s)	359
CviAII	CATG	1 cut(s)	293
CviQI	GTAC	1 cut(s)	359
DdeI	CTNAG	3 cut(s)	47, 363, 406
DpnI	GATC	2 cut(s)	113, 194
DpnII	GATC	2 cut(s)	111, 192
Eam1104I	CTCTTC	3 cut(s)	182, 228, 266
EarI	CTCTTC	3 cut(s)	182, 228, 266
Eco57I	CTGAAG	2 cut(s)	290, 411
Eco81I	CCTNAGG	1 cut(s)	363
Eco88I	CYCGRG	1 cut(s)	80
FaeI	CATG	1 cut(s)	296
FaiI	YATR	2 cut(s)	159, 294
FatI	CATG	1 cut(s)	292
Fnu4HI	GCNGC	9 cut(s)	65, 245, 248, 251, 254, 282, 285, 320, 328
FokI	GGATG	1 cut(s)	19
Fsp4HI	GCNGC	9 cut(s)	65, 245, 248, 251, 254, 282, 285, 320, 328
FspBI	CTAG	2 cut(s)	132, 354
GluI	GCNGC	9 cut(s)	65, 245, 248, 251, 254, 282, 285, 320, 328
GsaI	CCCAGC	1 cut(s)	55
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	1 cut(s)	296
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HindIII	AAGCTT	1 cut(s)	164
HinfI	GANTC	2 cut(s)	83, 335
HphI	GGTGA	2 cut(s)	14, 133
Hpy166II	GTNNAC	2 cut(s)	154, 359
Hpy188I	TCNGA	2 cut(s)	199, 313
Hpy188III	TCNNGA	2 cut(s)	80, 339
Hpy8I	GTNNAC	2 cut(s)	154, 359
Hpy99I	CGWCG	5 cut(s)	128, 131, 181, 212, 215
HpyAV	CCTTC	1 cut(s)	88
HpyCH4III	ACNGT	1 cut(s)	218
HpyCH4IV	ACGT	2 cut(s)	126, 150
HpyCH4V	TGCA	1 cut(s)	292
HpyF10VI	GCNNNNNNNGC	3 cut(s)	250, 253, 293
HpyF3I	CTNAG	3 cut(s)	47, 363, 406
HpySE526I	ACGT	2 cut(s)	126, 150
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	1 cut(s)	296
Kzo9I	GATC	2 cut(s)	111, 192
LmnI	GCTCC	1 cut(s)	301
LpnPI	CCDG	5 cut(s)	37, 43, 375, 381, 393
Lsp1109I	GCAGC	5 cut(s)	256, 259, 262, 265, 306
MaeI	CTAG	2 cut(s)	132, 354
MaeII	ACGT	2 cut(s)	126, 150
MalI	GATC	2 cut(s)	113, 194
MbiI	CCGCTC	1 cut(s)	287
MboI	GATC	2 cut(s)	111, 192
MboII	GAAGA	6 cut(s)	193, 196, 199, 245, 274, 283
MfeI	CAATTG	1 cut(s)	87
MflI	RGATCY	2 cut(s)	111, 192
MluCI	AATT	4 cut(s)	35, 74, 87, 344
MlyI	GAGTC	1 cut(s)	92
MspA1I	CMGCKG	2 cut(s)	51, 67
MunI	CAATTG	1 cut(s)	87
MwoI	GCNNNNNNNGC	3 cut(s)	250, 253, 293
NdeII	GATC	2 cut(s)	111, 192
NlaIII	CATG	1 cut(s)	296
NspI	RCATGY	1 cut(s)	296
PaeI	GCATGC	1 cut(s)	296
PaeR7I	CTCGAG	1 cut(s)	80
PfeI	GAWTC	1 cut(s)	335
PkrI	GCNGC	9 cut(s)	66, 246, 249, 252, 255, 283, 286, 321, 329
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
PspFI	CCCAGC	1 cut(s)	51
PsuI	RGATCY	2 cut(s)	111, 192
PvuII	CAGCTG	1 cut(s)	51
RsaI	GTAC	1 cut(s)	360
RsaNI	GTAC	1 cut(s)	359
SatI	GCNGC	9 cut(s)	65, 245, 248, 251, 254, 282, 285, 320, 328
Sau3AI	GATC	2 cut(s)	111, 192
SchI	GAGTC	1 cut(s)	92
Sfr274I	CTCGAG	1 cut(s)	80
SlaI	CTCGAG	1 cut(s)	80
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
SphI	GCATGC	1 cut(s)	296
Sse9I	AATT	4 cut(s)	35, 74, 87, 344
SsiI	CCGC	5 cut(s)	25, 65, 282, 285, 328
SspMI	CTAG	2 cut(s)	132, 354
TaaI	ACNGT	1 cut(s)	218
TaiI	ACGT	2 cut(s)	129, 153
TaqI	TCGA	2 cut(s)	81, 207
TasI	AATT	4 cut(s)	35, 74, 87, 344
TauI	GCSGC	4 cut(s)	67, 284, 287, 330
TfiI	GAWTC	1 cut(s)	335
TseI	GCWGC	5 cut(s)	244, 247, 250, 253, 319
TspDTI	ATGAA	1 cut(s)	119
XapI	RAATTY	3 cut(s)	35, 74, 344
XceI	RCATGY	1 cut(s)	296
XhoI	CTCGAG	1 cut(s)	80
XspI	CTAG	2 cut(s)	132, 354
ZraI	GACGTC	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.