RLG00000011666

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0030548
Physical Location & Seq
Forward (+)
11527384 .. 11528319
936 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011666

Sequence Viewer

Length: 492 bp
ATGTTACACGAAAGCGCCGCTTTCTCTGGAGTGTTGTCACACAGCAGCCCGCCTAGAAGAGCCACTCGCTCTGTAGTGTTGTCACCTACACTCTTGCAGCATGCCCCCTTCGGGCAATATGGCTTTCGAGAAAGAAGCTCGTTTATAAAATTCATGGGATTGATTCTACCTTCGGTTCATCTGGTTCCGCCTCAATGTGAGAATAGCATAGGAACTGGAAGTACGCTTCGCCACCTCGACCTCGAAACAGGCGTTGATCGGCTGCAGTCTTCGGGGCGAAAAGGCTTGCCCGCTCCCTTTGGGCTCCATTTCTCCCGCGGCACGCAGAAGGAAAGTAAAGAAAAACCTCCCCGTTCATATCTCTTATGCGCTATGAGCTCCCCAAGACCGAGGTTATGTCACTACCGGACCTTCATCTTTTCGAAAGCCCAGACCCATTCTTCTGGATCGTCATTAGTCCTATTTCAGGGGGCTATCTGCCCTATCTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

17.95

Weight (kDa)

10.19

Isoelectric Point (pI)

64.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030548)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_MTg0498501
rosa_laevigata RLG00000011666

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 146
AccBSI CCGCTC 1 cut(s) 293
AccII CGCG 1 cut(s) 318
AciI CCGC 6 cut(s) 18, 50, 188, 291, 316, 318
AclWI GGATC 1 cut(s) 454
AcsI RAATTY 1 cut(s) 149
AfaI GTAC 1 cut(s) 223
AfiI CCNNNNNNNGG 2 cut(s) 111, 466
AluBI AGCT 2 cut(s) 138, 378
AluI AGCT 2 cut(s) 138, 378
Alw21I GWGCWC 1 cut(s) 380
AlwI GGATC 1 cut(s) 454
ApeKI GCWGC 3 cut(s) 45, 97, 262
ApoI RAATTY 1 cut(s) 149
AspLEI GCGC 2 cut(s) 17, 371
AspS9I GGNCC 1 cut(s) 408
AsuHPI GGTGA 1 cut(s) 75
AsuII TTCGAA 1 cut(s) 422
AvaII GGWCC 1 cut(s) 408
BanII GRGCYC 2 cut(s) 306, 380
BbsI GAAGAC 1 cut(s) 261
Bbv12I GWGCWC 1 cut(s) 380
BbvI GCAGC 3 cut(s) 57, 109, 249
BfaI CTAG 1 cut(s) 54
BfmI CTRYAG 2 cut(s) 72, 263
BfoI RGCGCY 1 cut(s) 18
BisI GCNGC 5 cut(s) 18, 46, 98, 263, 319
BlsI GCNGC 5 cut(s) 19, 47, 99, 264, 320
Bme18I GGWCC 1 cut(s) 408
BmgT120I GGNCC 1 cut(s) 408
BmiI GGNNCC 2 cut(s) 186, 305
BpiI GAAGAC 1 cut(s) 261
BpmI CTGGAG 1 cut(s) 48
Bpu14I TTCGAA 1 cut(s) 422
BsaJI CCNNGG 2 cut(s) 316, 389
BsaWI WCCGGW 1 cut(s) 405
Bsc4I CCNNNNNNNGG 2 cut(s) 111, 466
Bse1I ACTGG 1 cut(s) 220
BseDI CCNNGG 2 cut(s) 316, 389
BseLI CCNNNNNNNGG 2 cut(s) 111, 466
BseNI ACTGG 1 cut(s) 220
BseXI GCAGC 3 cut(s) 57, 109, 249
Bsh1236I CGCG 1 cut(s) 318
BsiHKAI GWGCWC 1 cut(s) 380
BsiSI CCGG 1 cut(s) 406
BslI CCNNNNNNNGG 2 cut(s) 111, 466
Bsp119I TTCGAA 1 cut(s) 422
Bsp1286I GDGCHC 2 cut(s) 306, 380
Bsp143I GATC 2 cut(s) 256, 446
BspACI CCGC 6 cut(s) 18, 50, 188, 291, 316, 318
BspFNI CGCG 1 cut(s) 318
BspLI GGNNCC 2 cut(s) 186, 305
BspMAI CTGCAG 1 cut(s) 267
BspPI GGATC 1 cut(s) 454
BspQI GCTCTTC 1 cut(s) 52
BspT104I TTCGAA 1 cut(s) 422
BsrBI CCGCTC 1 cut(s) 293
BsrI ACTGG 1 cut(s) 220
BssECI CCNNGG 2 cut(s) 316, 389
BssMI GATC 2 cut(s) 256, 446
Bst6I CTCTTC 1 cut(s) 52
BstBI TTCGAA 1 cut(s) 422
BstC8I GCNNGC 5 cut(s) 50, 102, 287, 291, 323
BstDSI CCRYGG 1 cut(s) 316
BstENI CCTNNNNNAGG 1 cut(s) 464
BstFNI CGCG 1 cut(s) 318
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 2 cut(s) 17, 371
BstKTI GATC 2 cut(s) 259, 449
BstMBI GATC 2 cut(s) 256, 446
BstMWI GCNNNNNNNGC 1 cut(s) 375
BstNSI RCATGY 1 cut(s) 104
BstSFI CTRYAG 2 cut(s) 72, 263
BstUI CGCG 1 cut(s) 318
BstV1I GCAGC 3 cut(s) 57, 109, 249
BstV2I GAAGAC 1 cut(s) 261
BstXI CCANNNNNNTGG 1 cut(s) 443
BtgI CCRYGG 1 cut(s) 316
Cac8I GCNNGC 5 cut(s) 50, 102, 287, 291, 323
CfoI GCGC 2 cut(s) 17, 371
Cfr13I GGNCC 1 cut(s) 408
Cfr42I CCGCGG 1 cut(s) 319
Csp6I GTAC 1 cut(s) 222
CviAII CATG 2 cut(s) 101, 154
CviQI GTAC 1 cut(s) 222
DpnI GATC 2 cut(s) 258, 448
DpnII GATC 2 cut(s) 256, 446
Eam1104I CTCTTC 1 cut(s) 52
EarI CTCTTC 1 cut(s) 52
EciI GGCGGA 1 cut(s) 177
Ecl136II GAGCTC 1 cut(s) 378
Eco24I GRGCYC 2 cut(s) 306, 380
Eco47I GGWCC 1 cut(s) 408
Eco53kI GAGCTC 1 cut(s) 378
EcoICRI GAGCTC 1 cut(s) 378
EcoNI CCTNNNNNAGG 1 cut(s) 464
EcoT38I GRGCYC 2 cut(s) 306, 380
FaeI CATG 2 cut(s) 104, 157
FaiI YATR 9 cut(s) 102, 120, 146, 155, 209, 358, 367, 374, 397
FalI AAGNNNNNCTT 1 cut(s) 36
FatI CATG 2 cut(s) 100, 153
FauI CCCGC 3 cut(s) 57, 298, 323
Fnu4HI GCNGC 5 cut(s) 18, 46, 98, 263, 319
FriOI GRGCYC 2 cut(s) 306, 380
Fsp4HI GCNGC 5 cut(s) 18, 46, 98, 263, 319
FspBI CTAG 1 cut(s) 54
GlaI GCGC 2 cut(s) 16, 370
GluI GCNGC 5 cut(s) 18, 46, 98, 263, 319
GsuI CTGGAG 1 cut(s) 48
HaeII RGCGCY 1 cut(s) 18
HapII CCGG 1 cut(s) 406
HhaI GCGC 2 cut(s) 17, 371
Hin1II CATG 2 cut(s) 104, 157
Hin6I GCGC 2 cut(s) 15, 369
HinP1I GCGC 2 cut(s) 15, 369
HinfI GANTC 1 cut(s) 163
HpaII CCGG 1 cut(s) 406
HphI GGTGA 1 cut(s) 75
Hpy188III TCNNGA 3 cut(s) 27, 128, 444
HpyAV CCTTC 4 cut(s) 118, 180, 322, 421
HpyCH4V TGCA 2 cut(s) 97, 265
HpyF10VI GCNNNNNNNGC 1 cut(s) 375
Hsp92II CATG 2 cut(s) 104, 157
HspAI GCGC 2 cut(s) 15, 369
KspI CCGCGG 1 cut(s) 319
Kzo9I GATC 2 cut(s) 256, 446
LguI GCTCTTC 1 cut(s) 52
LmnI GCTCC 3 cut(s) 298, 309, 383
LpnPI CCDG 8 cut(s) 12, 167, 201, 234, 419, 429, 443, 452
Lsp1109I GCAGC 3 cut(s) 57, 109, 249
MaeI CTAG 1 cut(s) 54
MaeIII GTNAC 4 cut(s) 3, 36, 81, 398
MalI GATC 2 cut(s) 258, 448
MbiI CCGCTC 1 cut(s) 293
MboI GATC 2 cut(s) 256, 446
MboII GAAGA 3 cut(s) 69, 261, 432
MhlI GDGCHC 2 cut(s) 306, 380
MluCI AATT 1 cut(s) 149
MnlI CCTC 5 cut(s) 201, 245, 251, 357, 384
MseI TTAA 1 cut(s) 490
MspA1I CMGCKG 1 cut(s) 318
MspI CCGG 1 cut(s) 406
MvnI CGCG 1 cut(s) 318
MwoI GCNNNNNNNGC 1 cut(s) 375
NdeII GATC 2 cut(s) 256, 446
NlaIII CATG 2 cut(s) 104, 157
NlaIV GGNNCC 2 cut(s) 186, 305
NmuCI GTSAC 3 cut(s) 36, 81, 398
NspI RCATGY 1 cut(s) 104
NspV TTCGAA 1 cut(s) 422
PaeI GCATGC 1 cut(s) 104
PciSI GCTCTTC 1 cut(s) 52
PcsI WCGNNNNNNNCGW 1 cut(s) 249
PfeI GAWTC 1 cut(s) 163
PkrI GCNGC 5 cut(s) 19, 47, 99, 264, 320
PsiI TTATAA 1 cut(s) 146
Psp124BI GAGCTC 1 cut(s) 380
PspN4I GGNNCC 2 cut(s) 186, 305
PspPI GGNCC 1 cut(s) 408
PsrI GAACNNNNNNTAC 2 cut(s) 205, 237
PstI CTGCAG 1 cut(s) 267
RsaI GTAC 1 cut(s) 223
RsaNI GTAC 1 cut(s) 222
SacI GAGCTC 1 cut(s) 380
SacII CCGCGG 1 cut(s) 319
SapI GCTCTTC 1 cut(s) 52
SaqAI TTAA 1 cut(s) 490
SatI GCNGC 5 cut(s) 18, 46, 98, 263, 319
Sau3AI GATC 2 cut(s) 256, 446
Sau96I GGNCC 1 cut(s) 408
SduI GDGCHC 2 cut(s) 306, 380
SetI ASST 9 cut(s) 88, 140, 172, 237, 243, 349, 380, 395, 413
SfcI CTRYAG 2 cut(s) 72, 263
Sfr303I CCGCGG 1 cut(s) 319
SfuI TTCGAA 1 cut(s) 422
SgrBI CCGCGG 1 cut(s) 319
SinI GGWCC 1 cut(s) 408
SphI GCATGC 1 cut(s) 104
Sse9I AATT 1 cut(s) 149
SsiI CCGC 6 cut(s) 18, 50, 188, 291, 316, 318
SspMI CTAG 1 cut(s) 54
SstI GAGCTC 1 cut(s) 380
TaqI TCGA 4 cut(s) 127, 237, 243, 422
TaqII GACCGA 1 cut(s) 403
TasI AATT 1 cut(s) 149
TauI GCSGC 2 cut(s) 20, 321
TfiI GAWTC 1 cut(s) 163
Tru1I TTAA 1 cut(s) 490
Tru9I TTAA 1 cut(s) 490
TseFI GTSAC 3 cut(s) 36, 81, 398
TseI GCWGC 3 cut(s) 45, 97, 262
Tsp45I GTSAC 3 cut(s) 36, 81, 398
TspDTI ATGAA 4 cut(s) 142, 167, 345, 403
VpaK11BI GGWCC 1 cut(s) 408
XagI CCTNNNNNAGG 1 cut(s) 464
XapI RAATTY 1 cut(s) 149
XceI RCATGY 1 cut(s) 104
XspI CTAG 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.