RLG00000011958
ERF Family

Belongs to the GST superfamily

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
14087898 .. 14088582
685 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011958

Sequence Viewer

Length: 318 bp
ATGAGAGGTGGTGAATATAAAAAGGAGTCCTTCCTTGCCCTCAATAGTCAAGAGCAATTACACAATACATTGCCCATGAAGGTGGAGGCTCTAAAGTACGACCCAGCAGCCTCAAAACTGACTTTTGAGCTAGCTATGAAGCCTGCCTTTGGCAAGCCCACAGACTCCGCAGTTGTGGAGGAATTTGAAGCTAAGTTGGTTACAATTCTCGATGTGTATGAGACTCGTCTGGGCCAATCGAAATACTTGGGAGGTGACTGCTTCAGCCTTCAGATCATGGTGCTTTTTGGAGTTGATAAATATTTAGAATTTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

106

Amino Acids

11.83

Weight (kDa)

4.99

Isoelectric Point (pI)

32.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029249)

Species Orthologous Gene IDs
pyrus_communis pycom03g22360
rosa_laevigata RLG00000011958

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 168
AcsI RAATTY 2 cut(s) 182, 308
AcuI CTGAAG 2 cut(s) 247, 254
AfaI GTAC 1 cut(s) 98
AfiI CCNNNNNNNGG 1 cut(s) 149
AgsI TTSAA 1 cut(s) 188
AluBI AGCT 3 cut(s) 130, 134, 191
AluI AGCT 3 cut(s) 130, 134, 191
Alw26I GTCTC 1 cut(s) 215
AoxI GGCC 1 cut(s) 232
ApeKI GCWGC 1 cut(s) 107
ApoI RAATTY 2 cut(s) 182, 308
AspS9I GGNCC 1 cut(s) 232
AsuHPI GGTGA 2 cut(s) 23, 266
AsuNHI GCTAGC 1 cut(s) 130
BbvI GCAGC 1 cut(s) 119
BcoDI GTCTC 1 cut(s) 215
BfaI CTAG 1 cut(s) 131
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 232
BmtI GCTAGC 1 cut(s) 134
Bsc4I CCNNNNNNNGG 1 cut(s) 149
Bse3DI GCAATG 1 cut(s) 68
BseLI CCNNNNNNNGG 1 cut(s) 149
BseMI GCAATG 1 cut(s) 68
BseXI GCAGC 1 cut(s) 119
BseYI CCCAGC 1 cut(s) 103
BshFI GGCC 1 cut(s) 234
BslI CCNNNNNNNGG 1 cut(s) 149
BsmAI GTCTC 1 cut(s) 215
BsnI GGCC 1 cut(s) 234
Bsp143I GATC 1 cut(s) 273
BspACI CCGC 1 cut(s) 168
BspANI GGCC 1 cut(s) 234
BspOI GCTAGC 1 cut(s) 134
BsrDI GCAATG 1 cut(s) 68
BssMI GATC 1 cut(s) 273
BstC8I GCNNGC 3 cut(s) 132, 144, 155
BstDEI CTNAG 1 cut(s) 192
BstKTI GATC 1 cut(s) 276
BstMAI GTCTC 1 cut(s) 215
BstMBI GATC 1 cut(s) 273
BstV1I GCAGC 1 cut(s) 119
BstXI CCANNNNNNTGG 1 cut(s) 82
BsuRI GGCC 1 cut(s) 234
Cac8I GCNNGC 3 cut(s) 132, 144, 155
Cfr13I GGNCC 1 cut(s) 232
Csp6I GTAC 1 cut(s) 97
CviAII CATG 2 cut(s) 76, 277
CviJI RGCY 9 cut(s) 89, 110, 130, 134, 142, 157, 191, 234, 267
CviKI_1 RGCY 9 cut(s) 89, 110, 130, 134, 142, 157, 191, 234, 267
CviQI GTAC 1 cut(s) 97
DdeI CTNAG 1 cut(s) 192
DpnI GATC 1 cut(s) 275
DpnII GATC 1 cut(s) 273
Eco57I CTGAAG 2 cut(s) 247, 254
FaeI CATG 2 cut(s) 79, 280
FaiI YATR 5 cut(s) 18, 77, 137, 219, 278
FalI AAGNNNNNCTT 4 cut(s) 14, 46, 131, 163
FatI CATG 2 cut(s) 75, 276
Fnu4HI GCNGC 1 cut(s) 108
Fsp4HI GCNGC 1 cut(s) 108
FspBI CTAG 1 cut(s) 131
GluI GCNGC 1 cut(s) 108
GsaI CCCAGC 1 cut(s) 107
HaeIII GGCC 1 cut(s) 234
Hin1II CATG 2 cut(s) 79, 280
HinfI GANTC 3 cut(s) 26, 164, 223
HphI GGTGA 2 cut(s) 23, 266
Hpy188I TCNGA 1 cut(s) 273
Hpy188III TCNNGA 2 cut(s) 50, 209
HpyAV CCTTC 3 cut(s) 40, 73, 278
HpyF3I CTNAG 1 cut(s) 192
Hsp92II CATG 2 cut(s) 79, 280
Kzo9I GATC 1 cut(s) 273
LpnPI CCDG 3 cut(s) 117, 156, 215
Lsp1109I GCAGC 1 cut(s) 119
MaeI CTAG 1 cut(s) 131
MaeIII GTNAC 2 cut(s) 199, 254
MalI GATC 1 cut(s) 275
MboI GATC 1 cut(s) 273
MluCI AATT 4 cut(s) 56, 182, 204, 308
MlyI GAGTC 3 cut(s) 35, 158, 217
MnlI CCTC 5 cut(s) 50, 79, 121, 172, 245
MslI CAYNNNNRTG 1 cut(s) 80
NdeII GATC 1 cut(s) 273
NheI GCTAGC 1 cut(s) 130
NlaIII CATG 2 cut(s) 79, 280
NmuCI GTSAC 1 cut(s) 254
PkrI GCNGC 1 cut(s) 109
PleI GAGTC 3 cut(s) 34, 158, 217
PpsI GAGTC 3 cut(s) 34, 158, 217
PspFI CCCAGC 1 cut(s) 103
PspPI GGNCC 1 cut(s) 232
RsaI GTAC 1 cut(s) 98
RsaNI GTAC 1 cut(s) 97
RseI CAYNNNNRTG 1 cut(s) 80
SatI GCNGC 1 cut(s) 108
Sau3AI GATC 1 cut(s) 273
Sau96I GGNCC 1 cut(s) 232
SchI GAGTC 3 cut(s) 35, 158, 217
SetI ASST 6 cut(s) 10, 84, 132, 136, 193, 256
SmiMI CAYNNNNRTG 1 cut(s) 80
Sse9I AATT 4 cut(s) 56, 182, 204, 308
SsiI CCGC 1 cut(s) 168
SspI AATATT 1 cut(s) 302
SspMI CTAG 1 cut(s) 131
TaqI TCGA 2 cut(s) 210, 239
TasI AATT 4 cut(s) 56, 182, 204, 308
TseFI GTSAC 1 cut(s) 254
TseI GCWGC 1 cut(s) 107
Tsp45I GTSAC 1 cut(s) 254
TspDTI ATGAA 2 cut(s) 92, 152
XapI RAATTY 2 cut(s) 182, 308
XspI CTAG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.