Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0030744

Physical Location & Seq

Genomic Coordinates Reverse (-)

15510439 .. 15510992

Gene Structure 554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012127

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGCCCTATGTTCATATGGATTTTTTAATAGTTTTCCTTAATCCAATAGTTCTTTTATGGCTGTTGAGATTTGAGAATCCTTGTAATGGCTTACTGTTTTGCTTCCATTTTATGGCTGCTGGGGGTGTGTTGGGCCTGCCCTCAAATGAAGAGAGGATTCTAATCCCTGGTGTGCCTAGGAGTCGGTGGTTAGGATTTGAGGATCTTAAACCGATCAGTATACCGTTGGAAGCTGCGGTTCTTACAGCTGTGCCTGCAGGAGTGGATCTGCTCAGGTATAAAATGCAGAGAATGCTAGAGTGGGTTCCAGAGAATCGAATTACTGCACAGGAGGCCCTCAGTCATCCTTACTTTGCCAATATGCAATTCGATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000082 GO:0000278 GO:0000307 GO:0000902 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0008284 GO:0009058 GO:0009059 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009826 GO:0009888 GO:0009889 GO:0009987 GO:0010016 GO:0010033 GO:0010103 GO:0010154 GO:0010374 GO:0010376 GO:0010389 GO:0010440 GO:0010444 GO:0010468 GO:0010556 GO:0010564 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0022402 GO:0022414 GO:0023052 GO:0030154 GO:0030332 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032875 GO:0032989 GO:0032991 GO:0034641 GO:0034645 GO:0036211 GO:0040007 GO:0042023 GO:0042127 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044786 GO:0044843 GO:0046483 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051239 GO:0051716 GO:0051726 GO:0060255 GO:0060560 GO:0061458 GO:0061695 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090329 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:0097472 GO:0099402 GO:0140096 GO:1901360 GO:1901564 GO:1901576 GO:1901987 GO:1901990 GO:1902494 GO:1902554 GO:1902749 GO:1902806 GO:1902911 GO:1903047 GO:1990234 GO:2000026 GO:2000037 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

126

Amino Acids

14.31

Weight (kDa)

5.27

Isoelectric Point (pI)

40.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030744)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000012127
rosa_samantha	Rh6AG330400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	112
AccI	GTMKAC	1 cut(s)	220
AciI	CCGC	1 cut(s)	236
AclWI	GGATC	2 cut(s)	210, 273
AfiI	CCNNNNNNNGG	2 cut(s)	86, 112
AjnI	CCWGG	1 cut(s)	166
AjuI	GAANNNNNNNTTGG	1 cut(s)	350
AluBI	AGCT	2 cut(s)	233, 248
AluI	AGCT	2 cut(s)	233, 248
AlwI	GGATC	2 cut(s)	210, 273
AoxI	GGCC	2 cut(s)	133, 333
ApeKI	GCWGC	2 cut(s)	116, 233
AspA2I	CCTAGG	1 cut(s)	176
AspS9I	GGNCC	2 cut(s)	133, 334
AvrII	CCTAGG	1 cut(s)	176
BbvI	GCAGC	2 cut(s)	103, 220
BciT130I	CCWGG	1 cut(s)	168
BfaI	CTAG	2 cut(s)	177, 296
BfmI	CTRYAG	1 cut(s)	255
BisI	GCNGC	2 cut(s)	117, 234
BlnI	CCTAGG	1 cut(s)	176
BlsI	GCNGC	2 cut(s)	118, 235
Bme1390I	CCNGG	1 cut(s)	168
BmgT120I	GGNCC	2 cut(s)	133, 334
BmiI	GGNNCC	1 cut(s)	306
BmrFI	CCNGG	1 cut(s)	168
Bpu10I	CCTNAGC	1 cut(s)	272
BsaBI	GATNNNNATC	1 cut(s)	161
BsaJI	CCNNGG	2 cut(s)	166, 176
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 112
Bse8I	GATNNNNATC	1 cut(s)	161
BseBI	CCWGG	1 cut(s)	168
BseDI	CCNNGG	2 cut(s)	166, 176
BseGI	GGATG	1 cut(s)	343
BseJI	GATNNNNATC	1 cut(s)	161
BseLI	CCNNNNNNNGG	2 cut(s)	86, 112
BseMII	CTCAG	2 cut(s)	286, 352
BseXI	GCAGC	2 cut(s)	103, 220
BseYI	CCCAGC	1 cut(s)	119
BsgI	GTGCAG	1 cut(s)	309
BshFI	GGCC	2 cut(s)	135, 335
BslI	CCNNNNNNNGG	2 cut(s)	86, 112
BsmI	GAATGC	1 cut(s)	297
BsnI	GGCC	2 cut(s)	135, 335
Bsp143I	GATC	3 cut(s)	202, 213, 265
BspACI	CCGC	1 cut(s)	236
BspANI	GGCC	2 cut(s)	135, 335
BspCNI	CTCAG	2 cut(s)	285, 351
BspLI	GGNNCC	1 cut(s)	306
BspMAI	CTGCAG	1 cut(s)	259
BspPI	GGATC	2 cut(s)	210, 273
BssECI	CCNNGG	2 cut(s)	166, 176
BssMI	GATC	3 cut(s)	202, 213, 265
BssNAI	GTATAC	1 cut(s)	221
BssT1I	CCWWGG	1 cut(s)	176
Bst1107I	GTATAC	1 cut(s)	221
Bst2UI	CCWGG	1 cut(s)	168
Bst4CI	ACNGT	2 cut(s)	96, 225
Bst6I	CTCTTC	1 cut(s)	144
BstAPI	GCANNNNNTGC	1 cut(s)	292
BstC8I	GCNNGC	2 cut(s)	137, 255
BstDEI	CTNAG	2 cut(s)	272, 338
BstF5I	GGATG	1 cut(s)	343
BstKTI	GATC	3 cut(s)	205, 216, 268
BstMBI	GATC	3 cut(s)	202, 213, 265
BstMWI	GCNNNNNNNGC	3 cut(s)	254, 292, 332
BstNI	CCWGG	1 cut(s)	168
BstSCI	CCNGG	1 cut(s)	166
BstSFI	CTRYAG	1 cut(s)	255
BstV1I	GCAGC	2 cut(s)	103, 220
BstX2I	RGATCY	2 cut(s)	202, 265
BstYI	RGATCY	2 cut(s)	202, 265
BstZ17I	GTATAC	1 cut(s)	221
BsuRI	GGCC	2 cut(s)	135, 335
BtsCI	GGATG	1 cut(s)	343
Cac8I	GCNNGC	2 cut(s)	137, 255
Cfr13I	GGNCC	2 cut(s)	133, 334
CviJI	RGCY	7 cut(s)	61, 90, 116, 135, 233, 248, 335
CviKI_1	RGCY	7 cut(s)	61, 90, 116, 135, 233, 248, 335
DdeI	CTNAG	2 cut(s)	272, 338
DpnI	GATC	3 cut(s)	204, 215, 267
DpnII	GATC	3 cut(s)	202, 213, 265
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
Eco130I	CCWWGG	1 cut(s)	176
EcoO109I	RGGNCCY	1 cut(s)	334
EcoRII	CCWGG	1 cut(s)	166
EcoT14I	CCWWGG	1 cut(s)	176
ErhI	CCWWGG	1 cut(s)	176
FaiI	YATR	8 cut(s)	9, 15, 17, 58, 113, 221, 279, 362
FauNDI	CATATG	1 cut(s)	15
FblI	GTMKAC	1 cut(s)	220
Fnu4HI	GCNGC	2 cut(s)	117, 234
FokI	GGATG	1 cut(s)	330
Fsp4HI	GCNGC	2 cut(s)	117, 234
FspBI	CTAG	2 cut(s)	177, 296
GluI	GCNGC	2 cut(s)	117, 234
GsaI	CCCAGC	1 cut(s)	123
HaeIII	GGCC	2 cut(s)	135, 335
HinfI	GANTC	4 cut(s)	76, 157, 181, 313
Hpy166II	GTNNAC	1 cut(s)	221
Hpy188III	TCNNGA	1 cut(s)	308
Hpy8I	GTNNAC	1 cut(s)	221
HpyCH4III	ACNGT	2 cut(s)	96, 225
HpyCH4V	TGCA	4 cut(s)	257, 286, 326, 364
HpyF10VI	GCNNNNNNNGC	3 cut(s)	254, 292, 332
HpyF3I	CTNAG	2 cut(s)	272, 338
Kzo9I	GATC	3 cut(s)	202, 213, 265
LpnPI	CCDG	9 cut(s)	105, 149, 153, 180, 243, 259, 267, 314, 321
Lsp1109I	GCAGC	2 cut(s)	103, 220
MaeI	CTAG	2 cut(s)	177, 296
MalI	GATC	3 cut(s)	204, 215, 267
MboI	GATC	3 cut(s)	202, 213, 265
MboII	GAAGA	1 cut(s)	161
MflI	RGATCY	2 cut(s)	202, 265
MluCI	AATT	2 cut(s)	318, 365
MlyI	GAGTC	1 cut(s)	190
MmeI	TCCRAC	1 cut(s)	207
MnlI	CCTC	5 cut(s)	147, 151, 193, 325, 347
MseI	TTAA	3 cut(s)	26, 39, 207
MspA1I	CMGCKG	1 cut(s)	248
MspR9I	CCNGG	1 cut(s)	168
Mva1269I	GAATGC	1 cut(s)	297
MvaI	CCWGG	1 cut(s)	168
MwoI	GCNNNNNNNGC	3 cut(s)	254, 292, 332
NdeI	CATATG	1 cut(s)	15
NdeII	GATC	3 cut(s)	202, 213, 265
NlaIV	GGNNCC	1 cut(s)	306
PctI	GAATGC	1 cut(s)	297
PfeI	GAWTC	3 cut(s)	76, 157, 313
PflMI	CCANNNNNTGG	1 cut(s)	112
PkrI	GCNGC	2 cut(s)	118, 235
PleI	GAGTC	1 cut(s)	189
PpsI	GAGTC	1 cut(s)	189
Psp6I	CCWGG	1 cut(s)	166
PspFI	CCCAGC	1 cut(s)	119
PspGI	CCWGG	1 cut(s)	166
PspN4I	GGNNCC	1 cut(s)	306
PspPI	GGNCC	2 cut(s)	133, 334
PstI	CTGCAG	1 cut(s)	259
PsuI	RGATCY	2 cut(s)	202, 265
PvuII	CAGCTG	1 cut(s)	248
SaqAI	TTAA	3 cut(s)	26, 39, 207
SatI	GCNGC	2 cut(s)	117, 234
Sau3AI	GATC	3 cut(s)	202, 213, 265
Sau96I	GGNCC	2 cut(s)	133, 334
SbfI	CCTGCAGG	1 cut(s)	259
SchI	GAGTC	1 cut(s)	190
ScrFI	CCNGG	1 cut(s)	168
SdaI	CCTGCAGG	1 cut(s)	259
SetI	ASST	3 cut(s)	235, 250, 278
SfcI	CTRYAG	1 cut(s)	255
Sse8387I	CCTGCAGG	1 cut(s)	259
Sse9I	AATT	2 cut(s)	318, 365
SsiI	CCGC	1 cut(s)	236
SspMI	CTAG	2 cut(s)	177, 296
StyD4I	CCNGG	1 cut(s)	166
StyI	CCWWGG	1 cut(s)	176
TaaI	ACNGT	2 cut(s)	96, 225
TaqI	TCGA	2 cut(s)	316, 369
TasI	AATT	2 cut(s)	318, 365
TfiI	GAWTC	3 cut(s)	76, 157, 313
Tru1I	TTAA	3 cut(s)	26, 39, 207
Tru9I	TTAA	3 cut(s)	26, 39, 207
TseI	GCWGC	2 cut(s)	116, 233
TspDTI	ATGAA	1 cut(s)	162
Van91I	CCANNNNNTGG	1 cut(s)	112
XmaJI	CCTAGG	1 cut(s)	176
XmiI	GTMKAC	1 cut(s)	220
XspI	CTAG	2 cut(s)	177, 296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.