Rh6AG330400
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0030744
Physical Location & Seq
Forward (+)
53194670 .. 53199485
4816 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG330400.1

Sequence Viewer

Length: 228 bp
ATGGACAAGTATGAGACGCACATGGCGCTTGGGCGTCACGTGAAGTCTACTACGCTCGTCACCGCACTACCGGCGAGTTGTATATTGTTGGAAGCTGCAGTTCCTACAGCTGTGCCTGCAGGAGTGGATCTGCTTAGGAGAATGCTAGAGTGGGTTCCAGAGAATCGAATTACTGCACAGAAGGCCCTCAGTCATCCTTACTTTGCCAATATGCAATTCGGTTATTGA

Protein Analysis

75

Amino Acids

8.34

Weight (kDa)

7.95

Isoelectric Point (pI)

36.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0030744)

Species Orthologous Gene IDs
rosa_laevigata RLG00000012127
rosa_samantha Rh6AG330400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 47
AciI CCGC 1 cut(s) 63
AclWI GGATC 1 cut(s) 135
AcvI CACGTG 1 cut(s) 40
AcyI GRCGYC 1 cut(s) 34
AjuI GAANNNNNNNTTGG 1 cut(s) 200
AluBI AGCT 2 cut(s) 95, 110
AluI AGCT 2 cut(s) 95, 110
Alw26I GTCTC 1 cut(s) 8
AlwI GGATC 1 cut(s) 135
AoxI GGCC 1 cut(s) 183
ApeKI GCWGC 1 cut(s) 95
AspLEI GCGC 1 cut(s) 28
AspS9I GGNCC 1 cut(s) 184
AsuHPI GGTGA 1 cut(s) 52
BbrPI CACGTG 1 cut(s) 40
BbvI GCAGC 1 cut(s) 82
BcoDI GTCTC 1 cut(s) 8
BfaI CTAG 1 cut(s) 146
BfmI CTRYAG 3 cut(s) 96, 105, 117
BfoI RGCGCY 1 cut(s) 29
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
BmgT120I GGNCC 1 cut(s) 184
BmiI GGNNCC 1 cut(s) 156
Bpu10I CCTNAGC 1 cut(s) 134
BsaAI YACGTR 1 cut(s) 40
BsaHI GRCGYC 1 cut(s) 34
Bse118I RCCGGY 1 cut(s) 70
BseGI GGATG 1 cut(s) 193
BseMII CTCAG 1 cut(s) 202
BseXI GCAGC 1 cut(s) 82
BsgI GTGCAG 1 cut(s) 159
BshFI GGCC 1 cut(s) 185
BsiSI CCGG 1 cut(s) 71
BsmAI GTCTC 1 cut(s) 8
BsmBI CGTCTC 1 cut(s) 8
BsmI GAATGC 1 cut(s) 147
BsnI GGCC 1 cut(s) 185
Bsp143I GATC 1 cut(s) 127
BspACI CCGC 1 cut(s) 63
BspANI GGCC 1 cut(s) 185
BspCNI CTCAG 1 cut(s) 201
BspLI GGNNCC 1 cut(s) 156
BspMAI CTGCAG 2 cut(s) 100, 121
BspPI GGATC 1 cut(s) 135
BsrFI RCCGGY 1 cut(s) 70
BssAI RCCGGY 1 cut(s) 70
BssMI GATC 1 cut(s) 127
BssNI GRCGYC 1 cut(s) 34
BstACI GRCGYC 1 cut(s) 34
BstBAI YACGTR 1 cut(s) 40
BstC8I GCNNGC 1 cut(s) 117
BstDEI CTNAG 2 cut(s) 134, 188
BstF5I GGATG 1 cut(s) 193
BstH2I RGCGCY 1 cut(s) 29
BstHHI GCGC 1 cut(s) 28
BstKTI GATC 1 cut(s) 130
BstMAI GTCTC 1 cut(s) 8
BstMBI GATC 1 cut(s) 127
BstMWI GCNNNNNNNGC 4 cut(s) 25, 71, 116, 182
BstSFI CTRYAG 3 cut(s) 96, 105, 117
BstV1I GCAGC 1 cut(s) 82
BstX2I RGATCY 1 cut(s) 127
BstYI RGATCY 1 cut(s) 127
BsuRI GGCC 1 cut(s) 185
BtsCI GGATG 1 cut(s) 193
Cac8I GCNNGC 1 cut(s) 117
CfoI GCGC 1 cut(s) 28
Cfr10I RCCGGY 1 cut(s) 70
Cfr13I GGNCC 1 cut(s) 184
CseI GACGC 2 cut(s) 23, 25
CviAII CATG 1 cut(s) 22
CviJI RGCY 3 cut(s) 95, 110, 185
CviKI_1 RGCY 3 cut(s) 95, 110, 185
DdeI CTNAG 2 cut(s) 134, 188
DpnI GATC 1 cut(s) 129
DpnII GATC 1 cut(s) 127
Eco72I CACGTG 1 cut(s) 40
EcoO109I RGGNCCY 1 cut(s) 184
Esp3I CGTCTC 1 cut(s) 8
FaeI CATG 1 cut(s) 25
FaiI YATR 4 cut(s) 12, 23, 83, 212
FatI CATG 1 cut(s) 21
FblI GTMKAC 1 cut(s) 47
Fnu4HI GCNGC 1 cut(s) 96
FokI GGATG 1 cut(s) 180
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 1 cut(s) 146
GlaI GCGC 1 cut(s) 27
GluI GCNGC 1 cut(s) 96
HaeII RGCGCY 1 cut(s) 29
HaeIII GGCC 1 cut(s) 185
HapII CCGG 1 cut(s) 71
HgaI GACGC 2 cut(s) 23, 25
HhaI GCGC 1 cut(s) 28
Hin1I GRCGYC 1 cut(s) 34
Hin1II CATG 1 cut(s) 25
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HinfI GANTC 1 cut(s) 163
HpaII CCGG 1 cut(s) 71
HphI GGTGA 1 cut(s) 52
Hpy166II GTNNAC 1 cut(s) 48
Hpy188III TCNNGA 1 cut(s) 158
Hpy8I GTNNAC 1 cut(s) 48
HpyAV CCTTC 1 cut(s) 175
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 4 cut(s) 98, 119, 176, 214
HpyF10VI GCNNNNNNNGC 4 cut(s) 25, 71, 116, 182
HpyF3I CTNAG 2 cut(s) 134, 188
HpySE526I ACGT 1 cut(s) 39
Hsp92I GRCGYC 1 cut(s) 34
Hsp92II CATG 1 cut(s) 25
HspAI GCGC 1 cut(s) 26
Kzo9I GATC 1 cut(s) 127
LpnPI CCDG 4 cut(s) 84, 105, 129, 171
Lsp1109I GCAGC 1 cut(s) 82
MaeI CTAG 1 cut(s) 146
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 2 cut(s) 35, 58
MalI GATC 1 cut(s) 129
MboI GATC 1 cut(s) 127
MflI RGATCY 1 cut(s) 127
MluCI AATT 2 cut(s) 168, 215
MmeI TCCRAC 1 cut(s) 69
MnlI CCTC 1 cut(s) 197
MspA1I CMGCKG 1 cut(s) 110
MspI CCGG 1 cut(s) 71
Mva1269I GAATGC 1 cut(s) 147
MwoI GCNNNNNNNGC 4 cut(s) 25, 71, 116, 182
NdeII GATC 1 cut(s) 127
NlaIII CATG 1 cut(s) 25
NlaIV GGNNCC 1 cut(s) 156
NmuCI GTSAC 2 cut(s) 35, 58
PctI GAATGC 1 cut(s) 147
PfeI GAWTC 1 cut(s) 163
PkrI GCNGC 1 cut(s) 97
PmaCI CACGTG 1 cut(s) 40
PmlI CACGTG 1 cut(s) 40
Ppu21I YACGTR 1 cut(s) 40
PspCI CACGTG 1 cut(s) 40
PspN4I GGNNCC 1 cut(s) 156
PspPI GGNCC 1 cut(s) 184
PstI CTGCAG 2 cut(s) 100, 121
PsuI RGATCY 1 cut(s) 127
PvuII CAGCTG 1 cut(s) 110
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 1 cut(s) 127
Sau96I GGNCC 1 cut(s) 184
SbfI CCTGCAGG 1 cut(s) 121
SdaI CCTGCAGG 1 cut(s) 121
SetI ASST 3 cut(s) 42, 97, 112
SfcI CTRYAG 3 cut(s) 96, 105, 117
Sse8387I CCTGCAGG 1 cut(s) 121
Sse9I AATT 2 cut(s) 168, 215
SsiI CCGC 1 cut(s) 63
SspMI CTAG 1 cut(s) 146
TaiI ACGT 1 cut(s) 42
TaqI TCGA 1 cut(s) 166
TasI AATT 2 cut(s) 168, 215
TfiI GAWTC 1 cut(s) 163
TseFI GTSAC 2 cut(s) 35, 58
TseI GCWGC 1 cut(s) 95
Tsp45I GTSAC 2 cut(s) 35, 58
XmiI GTMKAC 1 cut(s) 47
XspI CTAG 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.