RLG00000012679

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0026653
Physical Location & Seq
Reverse (-)
21223770 .. 21224451
682 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012679

Sequence Viewer

Length: 600 bp
ATGTATCGCTGGTCTGGAATTCAACTGGATGTGAACAAATTTCGCGGCTATTATTCTGAAATTGAAAGGACAAGAGCAAGTGGTACAACTGAACAAGATAGGATTGTGGAAGCCAAACAAAAGTTTAGGAGGGAGCGAGGATACAACTTTACATATGAGCATTGTTGGCATGTGTTGAAGTTCCACCCGAAATGGAACTTGGAACTCTCTAGGAAAAAACCAAAGAAAACTCATGCTACCGTTCCTGCTACTTCGTCTCCTATCAATCCATCTGCTAGCCCAGATACAATAGATTTAGTTGATGGCAATGTTGAAGGCAATGAGTCTCCATGCTTGGAGAGGCCTATAGGCAAAAAGGCTGCCAAGACCTTGGCAAGGAAGGCAAAAGCTAAAGAGAAAGTGGAAGCAGCCCAATTTGAATTAGAAGACTATTATGCTCTGAAAGTTGAACATGCTCATAAGGAGGATGAGCAATTTCAACTGATGTATGATGCAGAACAGGAGAACATTAAGCTGAGGAAACAAGAACTTGAAATTCAAGTTCGAAAAGAGGATAATGCAATAATGGAAATTGATACTTCAACAATGGAACCAATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

200

Amino Acids

23.24

Weight (kDa)

7.03

Isoelectric Point (pI)

48.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 50 - 197 1.1e-20 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0026653)

Species Orthologous Gene IDs
prunus_persica Prupe.1G196800_v2.0.a1
rosa_laevigata RLG00000012679

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 45
AciI CCGC 1 cut(s) 45
AcsI RAATTY 3 cut(s) 18, 38, 534
AfaI GTAC 1 cut(s) 85
AfiI CCNNNNNNNGG 1 cut(s) 375
AjuI GAANNNNNNNTTGG 2 cut(s) 182, 214
AluBI AGCT 2 cut(s) 389, 514
AluI AGCT 2 cut(s) 389, 514
Alw26I GTCTC 2 cut(s) 261, 330
AoxI GGCC 1 cut(s) 341
ApeKI GCWGC 2 cut(s) 359, 407
ApoI RAATTY 3 cut(s) 18, 38, 534
AsuII TTCGAA 1 cut(s) 544
AsuNHI GCTAGC 1 cut(s) 275
BbsI GAAGAC 1 cut(s) 432
BbvCI CCTCAGC 1 cut(s) 515
BbvI GCAGC 2 cut(s) 346, 419
BccI CCATC 2 cut(s) 277, 296
BciVI GTATCC 1 cut(s) 134
BcoDI GTCTC 2 cut(s) 261, 330
BfaI CTAG 2 cut(s) 210, 276
BfmI CTRYAG 1 cut(s) 345
BfuI GTATCC 1 cut(s) 134
BisI GCNGC 3 cut(s) 46, 360, 408
BlsI GCNGC 3 cut(s) 47, 361, 409
BmiI GGNNCC 1 cut(s) 591
BmsI GCATC 1 cut(s) 481
BmtI GCTAGC 1 cut(s) 279
BpiI GAAGAC 1 cut(s) 432
Bpu10I CCTNAGC 1 cut(s) 515
Bpu14I TTCGAA 1 cut(s) 544
BsaJI CCNNGG 1 cut(s) 369
BsaXI ACNNNNNCTCC 2 cut(s) 241, 271
Bsc4I CCNNNNNNNGG 1 cut(s) 375
Bse1I ACTGG 1 cut(s) 30
Bse3DI GCAATG 2 cut(s) 313, 325
BseDI CCNNGG 1 cut(s) 369
BseGI GGATG 2 cut(s) 34, 472
BseLI CCNNNNNNNGG 1 cut(s) 375
BseMI GCAATG 2 cut(s) 313, 325
BseMII CTCAG 1 cut(s) 506
BseNI ACTGG 1 cut(s) 30
BseXI GCAGC 2 cut(s) 346, 419
Bsh1236I CGCG 1 cut(s) 45
BshFI GGCC 1 cut(s) 343
BslI CCNNNNNNNGG 1 cut(s) 375
BsmAI GTCTC 2 cut(s) 261, 330
BsmBI CGTCTC 1 cut(s) 261
BsnI GGCC 1 cut(s) 343
Bsp119I TTCGAA 1 cut(s) 544
BspACI CCGC 1 cut(s) 45
BspANI GGCC 1 cut(s) 343
BspCNI CTCAG 1 cut(s) 507
BspFNI CGCG 1 cut(s) 45
BspLI GGNNCC 1 cut(s) 591
BspOI GCTAGC 1 cut(s) 279
BspT104I TTCGAA 1 cut(s) 544
BsrDI GCAATG 2 cut(s) 313, 325
BsrI ACTGG 1 cut(s) 30
BssECI CCNNGG 1 cut(s) 369
BssT1I CCWWGG 1 cut(s) 369
Bst4CI ACNGT 1 cut(s) 241
BstBI TTCGAA 1 cut(s) 544
BstC8I GCNNGC 1 cut(s) 277
BstDEI CTNAG 1 cut(s) 515
BstENI CCTNNNNNAGG 1 cut(s) 373
BstF5I GGATG 2 cut(s) 34, 472
BstFNI CGCG 1 cut(s) 45
BstMAI GTCTC 2 cut(s) 261, 330
BstMWI GCNNNNNNNGC 2 cut(s) 166, 380
BstNSI RCATGY 2 cut(s) 173, 455
BstSFI CTRYAG 1 cut(s) 345
BstUI CGCG 1 cut(s) 45
BstV1I GCAGC 2 cut(s) 346, 419
BstV2I GAAGAC 1 cut(s) 432
BstXI CCANNNNNNTGG 1 cut(s) 370
BsuI GTATCC 1 cut(s) 134
BsuRI GGCC 1 cut(s) 343
BtsCI GGATG 2 cut(s) 34, 472
Cac8I GCNNGC 1 cut(s) 277
Csp6I GTAC 1 cut(s) 84
CviAII CATG 4 cut(s) 170, 233, 330, 452
CviJI RGCY 8 cut(s) 48, 113, 279, 343, 359, 389, 410, 514
CviKI_1 RGCY 8 cut(s) 48, 113, 279, 343, 359, 389, 410, 514
CviQI GTAC 1 cut(s) 84
DdeI CTNAG 1 cut(s) 515
Eco130I CCWWGG 1 cut(s) 369
Eco147I AGGCCT 1 cut(s) 343
EcoNI CCTNNNNNAGG 1 cut(s) 373
EcoRI GAATTC 1 cut(s) 18
EcoT14I CCWWGG 1 cut(s) 369
ErhI CCWWGG 1 cut(s) 369
Esp3I CGTCTC 1 cut(s) 261
FaeI CATG 4 cut(s) 173, 236, 333, 455
FatI CATG 4 cut(s) 169, 232, 329, 451
FauNDI CATATG 1 cut(s) 154
Fnu4HI GCNGC 3 cut(s) 46, 360, 408
FokI GGATG 2 cut(s) 41, 479
Fsp4HI GCNGC 3 cut(s) 46, 360, 408
FspBI CTAG 2 cut(s) 210, 276
GluI GCNGC 3 cut(s) 46, 360, 408
HaeIII GGCC 1 cut(s) 343
Hin1II CATG 4 cut(s) 173, 236, 333, 455
HinfI GANTC 1 cut(s) 323
Hpy166II GTNNAC 1 cut(s) 34
Hpy188I TCNGA 2 cut(s) 58, 441
Hpy188III TCNNGA 1 cut(s) 15
Hpy8I GTNNAC 1 cut(s) 34
HpyAV CCTTC 2 cut(s) 308, 373
HpyCH4III ACNGT 1 cut(s) 241
HpyCH4V TGCA 2 cut(s) 494, 560
HpyF10VI GCNNNNNNNGC 2 cut(s) 166, 380
HpyF3I CTNAG 1 cut(s) 515
Hsp92II CATG 4 cut(s) 173, 236, 333, 455
LmnI GCTCC 1 cut(s) 133
LpnPI CCDG 4 cut(s) 11, 258, 294, 485
Lsp1109I GCAGC 2 cut(s) 346, 419
LweI GCATC 1 cut(s) 481
MaeI CTAG 2 cut(s) 210, 276
MboII GAAGA 1 cut(s) 437
MluCI AATT 8 cut(s) 18, 38, 60, 413, 419, 473, 534, 570
MlyI GAGTC 1 cut(s) 332
MnlI CCTC 6 cut(s) 123, 131, 333, 457, 510, 544
MseI TTAA 1 cut(s) 510
MvnI CGCG 1 cut(s) 45
MwoI GCNNNNNNNGC 2 cut(s) 166, 380
NdeI CATATG 1 cut(s) 154
NheI GCTAGC 1 cut(s) 275
NlaIII CATG 4 cut(s) 173, 236, 333, 455
NlaIV GGNNCC 1 cut(s) 591
NspI RCATGY 2 cut(s) 173, 455
NspV TTCGAA 1 cut(s) 544
PceI AGGCCT 1 cut(s) 343
PkrI GCNGC 3 cut(s) 47, 361, 409
PleI GAGTC 1 cut(s) 331
PpsI GAGTC 1 cut(s) 331
PspN4I GGNNCC 1 cut(s) 591
RsaI GTAC 1 cut(s) 85
RsaNI GTAC 1 cut(s) 84
SaqAI TTAA 1 cut(s) 510
SatI GCNGC 3 cut(s) 46, 360, 408
SchI GAGTC 1 cut(s) 332
SetI ASST 3 cut(s) 371, 391, 516
SfaNI GCATC 1 cut(s) 481
SfcI CTRYAG 1 cut(s) 345
SfuI TTCGAA 1 cut(s) 544
Sse9I AATT 8 cut(s) 18, 38, 60, 413, 419, 473, 534, 570
SseBI AGGCCT 1 cut(s) 343
SsiI CCGC 1 cut(s) 45
SspMI CTAG 2 cut(s) 210, 276
StuI AGGCCT 1 cut(s) 343
StyI CCWWGG 1 cut(s) 369
TaaI ACNGT 1 cut(s) 241
TaqI TCGA 1 cut(s) 544
TasI AATT 8 cut(s) 18, 38, 60, 413, 419, 473, 534, 570
TauI GCSGC 1 cut(s) 48
Tru1I TTAA 1 cut(s) 510
Tru9I TTAA 1 cut(s) 510
TseI GCWGC 2 cut(s) 359, 407
XagI CCTNNNNNAGG 1 cut(s) 373
XapI RAATTY 3 cut(s) 18, 38, 534
XceI RCATGY 2 cut(s) 173, 455
XspI CTAG 2 cut(s) 210, 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.