RLG00000013283

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0030692
Physical Location & Seq
Reverse (-)
29206870 .. 29207863
994 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013283

Sequence Viewer

Length: 729 bp
ATGGAAGCACATGTACAAACCAACATCAGCATAGACCAGTCTGCTCTGCTTGCTTTCAAAGCCAGTATCACTGATGATTCTCATAAACTGATCTTCACCAACTGGTCAACCATTGTCCCAATTTGTAACTGGGTTGGCGTTACTTGTGCTGCTCGCCACCACAGAGTGGCGGAATTGGCTAGCTTGCACCGGTTGAGGTTGATTAGCTTGGGATATAACAAGTTTATGGGAATCATTCCCTCATGGTTCGGGTCCTTATCCAAACTTCAAACATTTAATTTGTATGGCAATCAGTTTTCAGGTTCCATACCAGTAGCCATCTTGAACTTATCTACACTTCAAGTAATTGATCTGATGTATAACCAACTCTCAGAAATTCCTAATGACATTGGCAGTTTAGATCAATTAGAAATATTGTTTGTGCAATTGAATGCTTTAAAAGGGTCTATGCCTATAGTTGTTTTCAACATGTCTTCTTTGACTATGTTGGCTCTCTATGGAAACAATTTAAATGGTAGTCTTCCAGATAATATATGTCAACATCTTCCGACTATTCAAGATTTGACTCTGGGTTCCAACAAATTCGACGGTCCACTTCCATCGAAATTGTGGGAATGCAAAGAACTCCTTCAATTGAAAGTACCAATGCAACAGTTTCAGTGGAGACATACCAAATACTTTTGGGAACTTGACTCATACACAGAAATGACCTTGGCTTTCACTATTTGA

Protein Analysis

243

Amino Acids

27.32

Weight (kDa)

6.14

Isoelectric Point (pI)

34.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 12 - 49 1.6e-09 Leucine rich repeat N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0030692)

Species Orthologous Gene IDs
rosa_laevigata RLG00000013283
rosa_multiflora Rmu_sc0003242.1_g000024

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 166
AciI CCGC 1 cut(s) 170
AcsI RAATTY 2 cut(s) 375, 581
AdeI CACNNNGTG 1 cut(s) 166
AfaI GTAC 2 cut(s) 15, 642
AfiI CCNNNNNNNGG 1 cut(s) 166
AflIII ACRYGT 2 cut(s) 10, 468
AgeI ACCGGT 1 cut(s) 189
AgsI TTSAA 9 cut(s) 58, 269, 325, 341, 430, 466, 557, 632, 637
AluBI AGCT 2 cut(s) 183, 207
AluI AGCT 2 cut(s) 183, 207
Alw26I GTCTC 1 cut(s) 658
ApeKI GCWGC 1 cut(s) 149
ApoI RAATTY 2 cut(s) 375, 581
AsiGI ACCGGT 1 cut(s) 189
Asp700I GAANNNNTTC 1 cut(s) 627
AspS9I GGNCC 2 cut(s) 252, 590
AsuHPI GGTGA 1 cut(s) 88
AsuNHI GCTAGC 1 cut(s) 179
AvaII GGWCC 2 cut(s) 252, 590
BarI GAAGNNNNNNTAC 1 cut(s) 29
BbsI GAAGAC 2 cut(s) 465, 512
BbvI GCAGC 1 cut(s) 136
BccI CCATC 2 cut(s) 326, 607
BcoDI GTCTC 1 cut(s) 658
BfaI CTAG 1 cut(s) 180
BfmI CTRYAG 1 cut(s) 453
BisI GCNGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 151
Bme18I GGWCC 2 cut(s) 252, 590
BmgT120I GGNCC 2 cut(s) 252, 590
BmiI GGNNCC 3 cut(s) 253, 304, 574
BmrI ACTGGG 1 cut(s) 139
BmtI GCTAGC 1 cut(s) 183
BmuI ACTGGG 1 cut(s) 139
BpiI GAAGAC 2 cut(s) 465, 512
BsaJI CCNNGG 1 cut(s) 711
BsaWI WCCGGW 1 cut(s) 189
Bsc4I CCNNNNNNNGG 1 cut(s) 166
Bse118I RCCGGY 1 cut(s) 189
Bse1I ACTGG 5 cut(s) 37, 63, 107, 134, 311
BseDI CCNNGG 1 cut(s) 711
BseLI CCNNNNNNNGG 1 cut(s) 166
BseMII CTCAG 1 cut(s) 384
BseNI ACTGG 5 cut(s) 37, 63, 107, 134, 311
BseXI GCAGC 1 cut(s) 136
BshTI ACCGGT 1 cut(s) 189
BsiSI CCGG 1 cut(s) 190
BslFI GGGAC 1 cut(s) 101
BslI CCNNNNNNNGG 1 cut(s) 166
BsmAI GTCTC 1 cut(s) 658
BsmFI GGGAC 1 cut(s) 101
BsmI GAATGC 2 cut(s) 436, 620
Bsp1407I TGTACA 1 cut(s) 13
Bsp143I GATC 3 cut(s) 90, 349, 400
BspACI CCGC 1 cut(s) 170
BspCNI CTCAG 1 cut(s) 383
BspLI GGNNCC 3 cut(s) 253, 304, 574
BspOI GCTAGC 1 cut(s) 183
BsrFI RCCGGY 1 cut(s) 189
BsrGI TGTACA 1 cut(s) 13
BsrI ACTGG 5 cut(s) 37, 63, 107, 134, 311
BssAI RCCGGY 1 cut(s) 189
BssECI CCNNGG 1 cut(s) 711
BssMI GATC 3 cut(s) 90, 349, 400
BssT1I CCWWGG 1 cut(s) 711
Bst4CI ACNGT 2 cut(s) 590, 654
BstAUI TGTACA 1 cut(s) 13
BstC8I GCNNGC 4 cut(s) 51, 154, 181, 185
BstDEI CTNAG 1 cut(s) 370
BstKTI GATC 3 cut(s) 93, 352, 403
BstMAI GTCTC 1 cut(s) 658
BstMBI GATC 3 cut(s) 90, 349, 400
BstMWI GCNNNNNNNGC 3 cut(s) 50, 59, 176
BstNSI RCATGY 2 cut(s) 14, 472
BstSFI CTRYAG 1 cut(s) 453
BstV1I GCAGC 1 cut(s) 136
BstV2I GAAGAC 2 cut(s) 465, 512
BtsIMutI CAGTG 2 cut(s) 69, 665
Cac8I GCNNGC 4 cut(s) 51, 154, 181, 185
Cfr10I RCCGGY 1 cut(s) 189
Cfr13I GGNCC 2 cut(s) 252, 590
Csp6I GTAC 2 cut(s) 14, 641
CspAI ACCGGT 1 cut(s) 189
CviAII CATG 3 cut(s) 11, 243, 469
CviJI RGCY 7 cut(s) 62, 179, 183, 207, 317, 491, 716
CviKI_1 RGCY 7 cut(s) 62, 179, 183, 207, 317, 491, 716
CviQI GTAC 2 cut(s) 14, 641
DdeI CTNAG 1 cut(s) 370
DpnI GATC 3 cut(s) 92, 351, 402
DpnII GATC 3 cut(s) 90, 349, 400
DraI TTTAAA 2 cut(s) 438, 510
DraIII CACNNNGTG 1 cut(s) 166
EciI GGCGGA 1 cut(s) 185
Eco130I CCWWGG 1 cut(s) 711
Eco47I GGWCC 2 cut(s) 252, 590
EcoO109I RGGNCCY 1 cut(s) 252
EcoT14I CCWWGG 1 cut(s) 711
ErhI CCWWGG 1 cut(s) 711
FaeI CATG 3 cut(s) 14, 246, 472
FalI AAGNNNNNCTT 2 cut(s) 612, 644
FaqI GGGAC 1 cut(s) 101
FatI CATG 3 cut(s) 10, 242, 468
Fnu4HI GCNGC 1 cut(s) 150
Fsp4HI GCNGC 1 cut(s) 150
FspBI CTAG 1 cut(s) 180
GluI GCNGC 1 cut(s) 150
HapII CCGG 1 cut(s) 190
Hin1II CATG 3 cut(s) 14, 246, 472
HincII GTYRAC 2 cut(s) 108, 539
HindII GTYRAC 2 cut(s) 108, 539
HinfI GANTC 4 cut(s) 77, 231, 565, 692
HpaII CCGG 1 cut(s) 190
HphI GGTGA 1 cut(s) 88
Hpy166II GTNNAC 3 cut(s) 108, 539, 593
Hpy188I TCNGA 3 cut(s) 354, 373, 549
Hpy188III TCNNGA 3 cut(s) 322, 524, 557
Hpy8I GTNNAC 3 cut(s) 108, 539, 593
Hpy99I CGWCG 1 cut(s) 590
HpyAV CCTTC 1 cut(s) 638
HpyCH4III ACNGT 2 cut(s) 590, 654
HpyCH4V TGCA 4 cut(s) 187, 424, 618, 649
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 59, 176
HpyF3I CTNAG 1 cut(s) 370
Hsp92II CATG 3 cut(s) 14, 246, 472
Kzo9I GATC 3 cut(s) 90, 349, 400
LpnPI CCDG 9 cut(s) 50, 76, 88, 115, 203, 285, 324, 537, 554
Lsp1109I GCAGC 1 cut(s) 136
MaeI CTAG 1 cut(s) 180
MaeIII GTNAC 2 cut(s) 125, 139
MalI GATC 3 cut(s) 92, 351, 402
MboI GATC 3 cut(s) 90, 349, 400
MboII GAAGA 4 cut(s) 85, 465, 512, 536
MfeI CAATTG 2 cut(s) 425, 632
MlyI GAGTC 2 cut(s) 559, 686
MmeI TCCRAC 2 cut(s) 572, 600
MnlI CCTC 2 cut(s) 189, 250
MroXI GAANNNNTTC 1 cut(s) 627
MseI TTAA 3 cut(s) 276, 437, 509
MslI CAYNNNNRTG 1 cut(s) 704
MspI CCGG 1 cut(s) 190
MunI CAATTG 2 cut(s) 425, 632
Mva1269I GAATGC 2 cut(s) 436, 620
MwoI GCNNNNNNNGC 3 cut(s) 50, 59, 176
NdeII GATC 3 cut(s) 90, 349, 400
NheI GCTAGC 1 cut(s) 179
NlaIII CATG 3 cut(s) 14, 246, 472
NlaIV GGNNCC 3 cut(s) 253, 304, 574
NspI RCATGY 2 cut(s) 14, 472
PciI ACATGT 2 cut(s) 10, 468
PctI GAATGC 2 cut(s) 436, 620
PdmI GAANNNNTTC 1 cut(s) 627
PfeI GAWTC 2 cut(s) 77, 231
PflMI CCANNNNNTGG 1 cut(s) 166
PinAI ACCGGT 1 cut(s) 189
PkrI GCNGC 1 cut(s) 151
PleI GAGTC 2 cut(s) 559, 686
PpsI GAGTC 2 cut(s) 559, 686
PpuMI RGGWCCY 1 cut(s) 252
PscI ACATGT 2 cut(s) 10, 468
Psp5II RGGWCCY 1 cut(s) 252
PspN4I GGNNCC 3 cut(s) 253, 304, 574
PspPI GGNCC 2 cut(s) 252, 590
PspPPI RGGWCCY 1 cut(s) 252
RsaI GTAC 2 cut(s) 15, 642
RsaNI GTAC 2 cut(s) 14, 641
RseI CAYNNNNRTG 1 cut(s) 704
SaqAI TTAA 3 cut(s) 276, 437, 509
SatI GCNGC 1 cut(s) 150
Sau3AI GATC 3 cut(s) 90, 349, 400
Sau96I GGNCC 2 cut(s) 252, 590
SchI GAGTC 2 cut(s) 559, 686
SetI ASST 5 cut(s) 185, 200, 209, 304, 713
SfcI CTRYAG 1 cut(s) 453
SinI GGWCC 2 cut(s) 252, 590
SmiI ATTTAAAT 1 cut(s) 510
SmiMI CAYNNNNRTG 1 cut(s) 704
SsiI CCGC 1 cut(s) 170
SspI AATATT 1 cut(s) 414
SspMI CTAG 1 cut(s) 180
StyI CCWWGG 1 cut(s) 711
SwaI ATTTAAAT 1 cut(s) 510
TaaI ACNGT 2 cut(s) 590, 654
TaqI TCGA 2 cut(s) 585, 602
TatI WGTACW 1 cut(s) 13
TfiI GAWTC 2 cut(s) 77, 231
Tru1I TTAA 3 cut(s) 276, 437, 509
Tru9I TTAA 3 cut(s) 276, 437, 509
TscAI CASTG 2 cut(s) 76, 665
TseI GCWGC 1 cut(s) 149
TspRI CASTG 2 cut(s) 76, 665
Van91I CCANNNNNTGG 1 cut(s) 166
VpaK11BI GGWCC 2 cut(s) 252, 590
XapI RAATTY 2 cut(s) 375, 581
XceI RCATGY 2 cut(s) 14, 472
XcmI CCANNNNNNNNNTGG 2 cut(s) 126, 606
XmnI GAANNNNTTC 1 cut(s) 627
XspI CTAG 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.