Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003242.1

Orthogroup ID

OG0030692

Physical Location & Seq

Genomic Coordinates Forward (+)

118043 .. 118975

Gene Structure 933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003242.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

atgtcttcattgattactctgactctatatgggaacaacttgaagggtagacttcctgacaatatatgtcagaatcttcctcatattcagtcgttggccttctctcacaaccagtttaatggtccacttccatccaaattttggcagtgcaaacaacttgtatctttactattgtcgcgtaacaacttcagtggaagcatacccaaaactattgggaacgtaactcggttgaaggagataaatcttgggtacaattacctgacaggtactataccacatgagataggtgatcttccaaatttagagatattggcagtccatgttaataatctgaatggcttcatcccaaccacaatcttcaacatgtccacagcaagtttaatatcacttggtgttaatcagctctcaggtagccttccaccagatataggtcttcagcttccaaacctacaagagctttatgtaggtagcaatttgctcaccggcgtattcccaaaatccatctccaatgcttctaacctcactaccctagagttggccgggaactcattttccggctatattcctagaactctctgcggcttacaagaccttcagttgcttaacttagagggcaacaaattaaccattgatacttccactccagaagcaaacgcttttccatgtctgaccaaccttagaaatttgaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04016 ko04064 ko04620 ko04621 ko04624 ko04626 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04016 map04064 map04620 map04621 map04624 map04626 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

230

Amino Acids

24.99

Weight (kDa)

6.89

Isoelectric Point (pI)

34.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030692)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000013283
rosa_multiflora	Rmu_sc0003242.1_g000024

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	141
AccI	GTMKAC	1 cut(s)	49
AccII	CGCG	1 cut(s)	178
AciI	CCGC	1 cut(s)	579
AcoI	YGGCCR	1 cut(s)	537
AcsI	RAATTY	3 cut(s)	137, 298, 682
AcuI	CTGAAG	3 cut(s)	172, 419, 578
AdeI	CACNNNGTG	1 cut(s)	392
AfaI	GTAC	2 cut(s)	251, 268
AfiI	CCNNNNNNNGG	3 cut(s)	141, 428, 535
AflIII	ACRYGT	1 cut(s)	363
AgsI	TTSAA	4 cut(s)	43, 232, 361, 688
AloI	GAACNNNNNNTCC	2 cut(s)	536, 568
AluBI	AGCT	3 cut(s)	403, 439, 457
AluI	AGCT	3 cut(s)	403, 439, 457
AoxI	GGCC	2 cut(s)	96, 537
ApoI	RAATTY	3 cut(s)	137, 298, 682
Asp700I	GAANNNNTTC	1 cut(s)	338
AspS9I	GGNCC	1 cut(s)	122
AsuC2I	CCSGG	1 cut(s)	541
AsuHPI	GGTGA	2 cut(s)	299, 472
AvaII	GGWCC	1 cut(s)	122
BbsI	GAAGAC	1 cut(s)	425
BccI	CCATC	2 cut(s)	139, 509
BcnI	CCSGG	1 cut(s)	541
BfaI	CTAG	2 cut(s)	530, 567
BisI	GCNGC	1 cut(s)	580
BlsI	GCNGC	1 cut(s)	581
Bme1390I	CCNGG	1 cut(s)	541
Bme18I	GGWCC	1 cut(s)	122
BmgT120I	GGNCC	1 cut(s)	122
BmrFI	CCNGG	1 cut(s)	541
BpiI	GAAGAC	1 cut(s)	425
BpmI	CTGGAG	1 cut(s)	627
BpuMI	CCSGG	1 cut(s)	541
BsaXI	ACNNNNNCTCC	2 cut(s)	625, 655
Bsc4I	CCNNNNNNNGG	3 cut(s)	141, 428, 535
Bse118I	RCCGGY	1 cut(s)	482
Bse1I	ACTGG	1 cut(s)	112
BseGI	GGATG	2 cut(s)	131, 342
BseLI	CCNNNNNNNGG	3 cut(s)	141, 428, 535
BseMII	CTCAG	1 cut(s)	420
BseNI	ACTGG	1 cut(s)	112
Bsh1236I	CGCG	1 cut(s)	178
BshFI	GGCC	2 cut(s)	98, 539
BsiSI	CCGG	3 cut(s)	483, 540, 555
BslI	CCNNNNNNNGG	3 cut(s)	141, 428, 535
BsnI	GGCC	2 cut(s)	98, 539
Bsp143I	GATC	1 cut(s)	289
BspACI	CCGC	1 cut(s)	579
BspANI	GGCC	2 cut(s)	98, 539
BspCNI	CTCAG	1 cut(s)	419
BspFNI	CGCG	1 cut(s)	178
BsrFI	RCCGGY	1 cut(s)	482
BsrI	ACTGG	1 cut(s)	112
BssAI	RCCGGY	1 cut(s)	482
BssMI	GATC	1 cut(s)	289
BstDEI	CTNAG	3 cut(s)	406, 607, 677
BstF5I	GGATG	2 cut(s)	131, 342
BstFNI	CGCG	1 cut(s)	178
BstKTI	GATC	1 cut(s)	292
BstMBI	GATC	1 cut(s)	289
BstNSI	RCATGY	1 cut(s)	367
BstSCI	CCNGG	1 cut(s)	539
BstUI	CGCG	1 cut(s)	178
BstV2I	GAAGAC	1 cut(s)	425
BstXI	CCANNNNNNTGG	1 cut(s)	119
BsuRI	GGCC	2 cut(s)	98, 539
BtsCI	GGATG	2 cut(s)	131, 342
BtsI	GCAGTG	1 cut(s)	152
BtsIMutI	CAGTG	2 cut(s)	152, 196
Cfr10I	RCCGGY	1 cut(s)	482
Cfr13I	GGNCC	1 cut(s)	122
Csp6I	GTAC	2 cut(s)	250, 267
CspCI	CAANNNNNGTGG	2 cut(s)	172, 207
CviAII	CATG	4 cut(s)	278, 320, 364, 663
CviJI	RGCY	9 cut(s)	98, 339, 403, 414, 439, 457, 539, 558, 582
CviKI_1	RGCY	9 cut(s)	98, 339, 403, 414, 439, 457, 539, 558, 582
CviQI	GTAC	2 cut(s)	250, 267
DdeI	CTNAG	3 cut(s)	406, 607, 677
DpnI	GATC	1 cut(s)	291
DpnII	GATC	1 cut(s)	289
DraIII	CACNNNGTG	1 cut(s)	392
EaeI	YGGCCR	1 cut(s)	537
Eco47I	GGWCC	1 cut(s)	122
Eco57I	CTGAAG	3 cut(s)	172, 419, 578
FaeI	CATG	4 cut(s)	281, 323, 367, 666
FatI	CATG	4 cut(s)	277, 319, 363, 662
FblI	GTMKAC	1 cut(s)	49
Fnu4HI	GCNGC	1 cut(s)	580
FokI	GGATG	2 cut(s)	118, 329
Fsp4HI	GCNGC	1 cut(s)	580
FspBI	CTAG	2 cut(s)	530, 567
GluI	GCNGC	1 cut(s)	580
GsuI	CTGGAG	1 cut(s)	627
HaeIII	GGCC	2 cut(s)	98, 539
HapII	CCGG	3 cut(s)	483, 540, 555
Hin1II	CATG	4 cut(s)	281, 323, 367, 666
HinfI	GANTC	2 cut(s)	22, 73
HpaII	CCGG	3 cut(s)	483, 540, 555
HphI	GGTGA	2 cut(s)	299, 472
Hpy166II	GTNNAC	3 cut(s)	50, 125, 369
Hpy188I	TCNGA	4 cut(s)	21, 72, 333, 669
Hpy188III	TCNNGA	2 cut(s)	56, 644
Hpy8I	GTNNAC	3 cut(s)	50, 125, 369
HpyAV	CCTTC	5 cut(s)	37, 109, 226, 425, 602
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	1 cut(s)	150
HpyF3I	CTNAG	3 cut(s)	406, 607, 677
HpySE526I	ACGT	1 cut(s)	219
Hsp92II	CATG	4 cut(s)	281, 323, 367, 666
Kzo9I	GATC	1 cut(s)	289
MaeI	CTAG	2 cut(s)	530, 567
MaeII	ACGT	1 cut(s)	219
MaeIII	GTNAC	2 cut(s)	179, 220
MalI	GATC	1 cut(s)	291
MboI	GATC	1 cut(s)	289
MboII	GAAGA	4 cut(s)	68, 284, 349, 425
MluCI	AATT	7 cut(s)	137, 253, 298, 472, 620, 682, 688
MlyI	GAGTC	1 cut(s)	16
MnlI	CCTC	3 cut(s)	90, 530, 604
MroXI	GAANNNNTTC	1 cut(s)	338
MseI	TTAA	7 cut(s)	117, 324, 380, 396, 603, 623, 691
MspI	CCGG	3 cut(s)	483, 540, 555
MspR9I	CCNGG	1 cut(s)	541
MvnI	CGCG	1 cut(s)	178
NciI	CCSGG	1 cut(s)	541
NdeII	GATC	1 cut(s)	289
NlaIII	CATG	4 cut(s)	281, 323, 367, 666
NspI	RCATGY	1 cut(s)	367
PciI	ACATGT	1 cut(s)	363
PdmI	GAANNNNTTC	1 cut(s)	338
PfeI	GAWTC	1 cut(s)	73
PflMI	CCANNNNNTGG	1 cut(s)	141
PkrI	GCNGC	1 cut(s)	581
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
PscI	ACATGT	1 cut(s)	363
PspPI	GGNCC	1 cut(s)	122
RsaI	GTAC	2 cut(s)	251, 268
RsaNI	GTAC	2 cut(s)	250, 267
SaqAI	TTAA	7 cut(s)	117, 324, 380, 396, 603, 623, 691
SatI	GCNGC	1 cut(s)	580
Sau3AI	GATC	1 cut(s)	289
Sau96I	GGNCC	1 cut(s)	122
SchI	GAGTC	1 cut(s)	16
ScrFI	CCNGG	1 cut(s)	541
SgrAI	CRCCGGYG	1 cut(s)	482
SinI	GGWCC	1 cut(s)	122
Sse9I	AATT	7 cut(s)	137, 253, 298, 472, 620, 682, 688
SsiI	CCGC	1 cut(s)	579
SspMI	CTAG	2 cut(s)	530, 567
StyD4I	CCNGG	1 cut(s)	539
TaiI	ACGT	1 cut(s)	222
TasI	AATT	7 cut(s)	137, 253, 298, 472, 620, 682, 688
TauI	GCSGC	1 cut(s)	582
TfiI	GAWTC	1 cut(s)	73
Tru1I	TTAA	7 cut(s)	117, 324, 380, 396, 603, 623, 691
Tru9I	TTAA	7 cut(s)	117, 324, 380, 396, 603, 623, 691
TscAI	CASTG	2 cut(s)	152, 196
TspDTI	ATGAA	1 cut(s)	331
TspRI	CASTG	2 cut(s)	152, 196
Van91I	CCANNNNNTGG	1 cut(s)	141
VpaK11BI	GGWCC	1 cut(s)	122
XapI	RAATTY	3 cut(s)	137, 298, 682
XceI	RCATGY	1 cut(s)	367
XcmI	CCANNNNNNNNNTGG	1 cut(s)	138
XmiI	GTMKAC	1 cut(s)	49
XmnI	GAANNNNTTC	1 cut(s)	338
XspI	CTAG	2 cut(s)	530, 567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.