RLG00000013366

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0025297
Physical Location & Seq
Reverse (-)
30364992 .. 30365309
318 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013366

Sequence Viewer

Length: 318 bp
ATGACGAACTCCGGCAATTCGCGACGAAGAGCAGACTGCTCTTCACACCCAAGCAATTGCTCAGGACACCTAAGCTCTATCTTCTCGCTGAATCTGTCGAACACCGTGTTGCAAATCGAACACCTCGCCCTCGCGGTCAAGATCGAGCTTCTGCACTGGCCAATTCTCATTCGGCCCGGATCTCATCTTTGCCTTCCGCTCTTGCAACCACATTCGCTGCACGAGCTTTTCCGGCCCAGCTCCAATTCATTCACCTTCGCCGGAGTTGATTTGAGATCGAGATGCAGACCTCCGATTCGCTGCGTTTTGATTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.68

Weight (kDa)

9.48

Isoelectric Point (pI)

61.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025297)

Species Orthologous Gene IDs
rosa_laevigata RLG00000013366 RLG00000017155 RLG00000032657

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 199
AccII CGCG 2 cut(s) 22, 134
AciI CCGC 2 cut(s) 134, 197
AclWI GGATC 1 cut(s) 187
AcoI YGGCCR 1 cut(s) 158
AluBI AGCT 4 cut(s) 75, 148, 226, 240
AluI AGCT 4 cut(s) 75, 148, 226, 240
AlwI GGATC 1 cut(s) 187
AoxI GGCC 3 cut(s) 158, 173, 233
ApeKI GCWGC 2 cut(s) 217, 300
ArsI GACNNNNNNTTYG 2 cut(s) 279, 311
AspS9I GGNCC 2 cut(s) 174, 234
AsuC2I CCSGG 1 cut(s) 177
AsuHPI GGTGA 1 cut(s) 244
BalI TGGCCA 1 cut(s) 160
BauI CACGAG 1 cut(s) 221
BbvI GCAGC 2 cut(s) 204, 287
BcnI CCSGG 1 cut(s) 177
BisI GCNGC 2 cut(s) 218, 301
BlsI GCNGC 2 cut(s) 219, 302
Bme1390I CCNGG 1 cut(s) 177
BmgT120I GGNCC 2 cut(s) 174, 234
BmrFI CCNGG 1 cut(s) 177
BmsI GCATC 1 cut(s) 272
Bpu10I CCTNAGC 2 cut(s) 61, 71
BpuMI CCSGG 1 cut(s) 177
Bse1I ACTGG 1 cut(s) 161
BseMII CTCAG 1 cut(s) 75
BseNI ACTGG 1 cut(s) 161
BseXI GCAGC 2 cut(s) 204, 287
BseYI CCCAGC 1 cut(s) 236
BsgI GTGCAG 2 cut(s) 137, 203
Bsh1236I CGCG 2 cut(s) 22, 134
BshFI GGCC 3 cut(s) 160, 175, 235
BsiSI CCGG 4 cut(s) 12, 177, 232, 261
BsnI GGCC 3 cut(s) 160, 175, 235
Bsp143I GATC 3 cut(s) 141, 179, 275
Bsp68I TCGCGA 1 cut(s) 22
BspACI CCGC 2 cut(s) 134, 197
BspANI GGCC 3 cut(s) 160, 175, 235
BspCNI CTCAG 1 cut(s) 74
BspFNI CGCG 2 cut(s) 22, 134
BspHI TCATGA 1 cut(s) 314
BspPI GGATC 1 cut(s) 187
BspQI GCTCTTC 2 cut(s) 22, 46
BsrBI CCGCTC 1 cut(s) 199
BsrI ACTGG 1 cut(s) 161
BssMI GATC 3 cut(s) 141, 179, 275
BssSI CACGAG 1 cut(s) 221
Bst2BI CACGAG 1 cut(s) 221
Bst4CI ACNGT 1 cut(s) 106
Bst6I CTCTTC 2 cut(s) 22, 46
BstDEI CTNAG 2 cut(s) 61, 71
BstFNI CGCG 2 cut(s) 22, 134
BstKTI GATC 3 cut(s) 144, 182, 278
BstMBI GATC 3 cut(s) 141, 179, 275
BstMWI GCNNNNNNNGC 2 cut(s) 223, 232
BstSCI CCNGG 1 cut(s) 175
BstUI CGCG 2 cut(s) 22, 134
BstV1I GCAGC 2 cut(s) 204, 287
BstX2I RGATCY 1 cut(s) 179
BstYI RGATCY 1 cut(s) 179
BsuRI GGCC 3 cut(s) 160, 175, 235
BtsIMutI CAGTG 1 cut(s) 154
BtuMI TCGCGA 1 cut(s) 22
CciI TCATGA 1 cut(s) 314
Cfr13I GGNCC 2 cut(s) 174, 234
CviAII CATG 1 cut(s) 315
CviJI RGCY 7 cut(s) 75, 148, 160, 175, 226, 235, 240
CviKI_1 RGCY 7 cut(s) 75, 148, 160, 175, 226, 235, 240
DdeI CTNAG 2 cut(s) 61, 71
DpnI GATC 3 cut(s) 143, 181, 277
DpnII GATC 3 cut(s) 141, 179, 275
EaeI YGGCCR 1 cut(s) 158
Eam1104I CTCTTC 2 cut(s) 22, 46
EarI CTCTTC 2 cut(s) 22, 46
FaeI CATG 1 cut(s) 318
FaiI YATR 1 cut(s) 316
FatI CATG 1 cut(s) 314
Fnu4HI GCNGC 2 cut(s) 218, 301
Fsp4HI GCNGC 2 cut(s) 218, 301
GluI GCNGC 2 cut(s) 218, 301
GsaI CCCAGC 1 cut(s) 240
HaeIII GGCC 3 cut(s) 160, 175, 235
HapII CCGG 4 cut(s) 12, 177, 232, 261
Hin1II CATG 1 cut(s) 318
HinfI GANTC 2 cut(s) 91, 295
HpaII CCGG 4 cut(s) 12, 177, 232, 261
HphI GGTGA 1 cut(s) 244
Hpy188I TCNGA 1 cut(s) 294
Hpy188III TCNNGA 5 cut(s) 21, 63, 139, 279, 315
Hpy99I CGWCG 1 cut(s) 27
HpyAV CCTTC 2 cut(s) 203, 265
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4V TGCA 5 cut(s) 112, 154, 205, 220, 285
HpyF10VI GCNNNNNNNGC 2 cut(s) 223, 232
HpyF3I CTNAG 2 cut(s) 61, 71
Hsp92II CATG 1 cut(s) 318
Kzo9I GATC 3 cut(s) 141, 179, 275
LguI GCTCTTC 2 cut(s) 22, 46
LmnI GCTCC 1 cut(s) 245
LpnPI CCDG 7 cut(s) 25, 48, 142, 190, 245, 250, 274
Lsp1109I GCAGC 2 cut(s) 204, 287
LweI GCATC 1 cut(s) 272
MalI GATC 3 cut(s) 143, 181, 277
MbiI CCGCTC 1 cut(s) 199
MboI GATC 3 cut(s) 141, 179, 275
MboII GAAGA 3 cut(s) 33, 39, 73
MfeI CAATTG 1 cut(s) 55
MflI RGATCY 1 cut(s) 179
MlsI TGGCCA 1 cut(s) 160
MluCI AATT 4 cut(s) 16, 55, 162, 244
MluNI TGGCCA 1 cut(s) 160
MnlI CCTC 3 cut(s) 134, 140, 300
Mox20I TGGCCA 1 cut(s) 160
MscI TGGCCA 1 cut(s) 160
Msp20I TGGCCA 1 cut(s) 160
MspI CCGG 4 cut(s) 12, 177, 232, 261
MspR9I CCNGG 1 cut(s) 177
MunI CAATTG 1 cut(s) 55
MvnI CGCG 2 cut(s) 22, 134
MwoI GCNNNNNNNGC 2 cut(s) 223, 232
NciI CCSGG 1 cut(s) 177
NdeII GATC 3 cut(s) 141, 179, 275
NlaIII CATG 1 cut(s) 318
NruI TCGCGA 1 cut(s) 22
PagI TCATGA 1 cut(s) 314
PciSI GCTCTTC 2 cut(s) 22, 46
PfeI GAWTC 2 cut(s) 91, 295
PkrI GCNGC 2 cut(s) 219, 302
PspFI CCCAGC 1 cut(s) 236
PspPI GGNCC 2 cut(s) 174, 234
PsuI RGATCY 1 cut(s) 179
RruI TCGCGA 1 cut(s) 22
SapI GCTCTTC 2 cut(s) 22, 46
SatI GCNGC 2 cut(s) 218, 301
Sau3AI GATC 3 cut(s) 141, 179, 275
Sau96I GGNCC 2 cut(s) 174, 234
ScrFI CCNGG 1 cut(s) 177
SetI ASST 8 cut(s) 72, 77, 126, 150, 228, 242, 257, 292
SfaNI GCATC 1 cut(s) 272
Sse9I AATT 4 cut(s) 16, 55, 162, 244
SsiI CCGC 2 cut(s) 134, 197
StyD4I CCNGG 1 cut(s) 175
TaaI ACNGT 1 cut(s) 106
TaqI TCGA 4 cut(s) 98, 117, 144, 278
TasI AATT 4 cut(s) 16, 55, 162, 244
TfiI GAWTC 2 cut(s) 91, 295
TscAI CASTG 1 cut(s) 161
TseI GCWGC 2 cut(s) 217, 300
TspDTI ATGAA 2 cut(s) 237, 303
TspRI CASTG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.