RLG00000014572

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0030738
Physical Location & Seq
Reverse (-)
54927648 .. 54929545
1898 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014572

Sequence Viewer

Length: 525 bp
ATGATTGTTAAGTATATCTATACGTTTCACTTCATAGACCAGTACAAGCCGACGGCGTCGTTTTGGTTCACCGAGGGGCCGTTGGAGAGCGGGTTGGACCCGCCGCTGACCCGGTTCCAGATAGACCATTCGGGTCAGCTCCGGCAGTATACTTGCGGTTTAAGCGAGACCTGGGACAAGTTTTGGTACCAGCCTGAGGACAAGTACAGAGTGTTTGGTTTGTGTGGGAGGTTTGGGGTTTGTGATAGTGAGACTGCCGAACCCTGTGAGTGTCCCTCAGGGTTTAAGCCTGTGGATGAGTCTGGTTGGGACTCTGGGGACGATTCCTCCTCATTGAATAAGCGTTTGACAAAGTCCTTCGCTTCAATAGATAACGAAGGCCAAGCCCCAAAGCTCCGCCATCGCTCCGATCTAAAACGAATGGTGGCAGCACAAGAAGATGAGGAACCTCGAGCTTCCGATCATCGAGCCGGCAACAAGGAGCTCAAATTCGAAGCCGAGTCGTTCTCCGACGAGCGGCTATGA

Protein Analysis

175

Amino Acids

20.0

Weight (kDa)

4.97

Isoelectric Point (pI)

44.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 35 - 97 5.6e-14 S-locus glycoprotein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0030738)

Species Orthologous Gene IDs
rosa_laevigata RLG00000014572
rosa_samantha Rh6AG413600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 186
AccB1I GGYRCC 1 cut(s) 186
AccBSI CCGCTC 2 cut(s) 90, 517
AccI GTMKAC 1 cut(s) 149
AciI CCGC 6 cut(s) 90, 101, 104, 156, 397, 517
AcsI RAATTY 1 cut(s) 488
AcyI GRCGYC 1 cut(s) 56
AfaI GTAC 3 cut(s) 44, 188, 206
AfiI CCNNNNNNNGG 2 cut(s) 196, 516
AgsI TTSAA 2 cut(s) 337, 366
AjnI CCWGG 1 cut(s) 170
AluBI AGCT 4 cut(s) 139, 394, 455, 484
AluI AGCT 4 cut(s) 139, 394, 455, 484
Alw21I GWGCWC 1 cut(s) 486
Alw26I GTCTC 2 cut(s) 161, 245
Ama87I CYCGRG 1 cut(s) 450
AoxI GGCC 2 cut(s) 77, 379
ApeKI GCWGC 1 cut(s) 428
ApoI RAATTY 1 cut(s) 488
Asp718I GGTACC 1 cut(s) 186
AspS9I GGNCC 2 cut(s) 77, 97
AsuC2I CCSGG 1 cut(s) 112
AsuHPI GGTGA 1 cut(s) 61
AsuII TTCGAA 1 cut(s) 492
AvaI CYCGRG 1 cut(s) 450
AvaII GGWCC 1 cut(s) 97
AxyI CCTNAGG 2 cut(s) 195, 277
BanI GGYRCC 1 cut(s) 186
BanII GRGCYC 1 cut(s) 486
Bbv12I GWGCWC 1 cut(s) 486
BbvI GCAGC 1 cut(s) 440
BccI CCATC 1 cut(s) 408
BceAI ACGGC 2 cut(s) 64, 69
BciT130I CCWGG 1 cut(s) 172
BcnI CCSGG 1 cut(s) 112
BcoDI GTCTC 2 cut(s) 161, 245
BisI GCNGC 3 cut(s) 104, 429, 518
BlsI GCNGC 3 cut(s) 105, 430, 519
Bme1390I CCNGG 2 cut(s) 112, 172
Bme18I GGWCC 1 cut(s) 97
BmeT110I CYCGRG 1 cut(s) 450
BmgT120I GGNCC 2 cut(s) 77, 97
BmiI GGNNCC 5 cut(s) 78, 99, 116, 188, 447
BmrFI CCNGG 2 cut(s) 112, 172
BplI GAGNNNNNCTC 4 cut(s) 260, 292, 491, 523
Bpu14I TTCGAA 1 cut(s) 492
BpuMI CCSGG 1 cut(s) 112
BsaHI GRCGYC 1 cut(s) 56
BsaI GGTCTC 1 cut(s) 161
BsaJI CCNNGG 2 cut(s) 72, 171
BsaXI ACNNNNNCTCC 4 cut(s) 77, 107, 311, 341
Bsc4I CCNNNNNNNGG 2 cut(s) 196, 516
Bse118I RCCGGY 1 cut(s) 470
Bse1I ACTGG 1 cut(s) 40
Bse21I CCTNAGG 2 cut(s) 195, 277
BseBI CCWGG 1 cut(s) 172
BseDI CCNNGG 2 cut(s) 72, 171
BseGI GGATG 1 cut(s) 301
BseLI CCNNNNNNNGG 2 cut(s) 196, 516
BseMII CTCAG 2 cut(s) 186, 291
BseNI ACTGG 1 cut(s) 40
BseRI GAGGAG 1 cut(s) 319
BseXI GCAGC 1 cut(s) 440
BshFI GGCC 2 cut(s) 79, 381
BshNI GGYRCC 1 cut(s) 186
BsiHKAI GWGCWC 1 cut(s) 486
BsiHKCI CYCGRG 1 cut(s) 450
BsiSI CCGG 3 cut(s) 112, 142, 471
BslFI GGGAC 4 cut(s) 188, 258, 323, 332
BslI CCNNNNNNNGG 2 cut(s) 196, 516
BsmAI GTCTC 2 cut(s) 161, 245
BsmFI GGGAC 4 cut(s) 188, 258, 323, 332
BsnI GGCC 2 cut(s) 79, 381
Bso31I GGTCTC 1 cut(s) 161
BsoBI CYCGRG 1 cut(s) 450
Bsp119I TTCGAA 1 cut(s) 492
Bsp1286I GDGCHC 1 cut(s) 486
Bsp143I GATC 2 cut(s) 409, 460
BspACI CCGC 6 cut(s) 90, 101, 104, 156, 397, 517
BspANI GGCC 2 cut(s) 79, 381
BspCNI CTCAG 2 cut(s) 187, 290
BspLI GGNNCC 5 cut(s) 78, 99, 116, 188, 447
BspT104I TTCGAA 1 cut(s) 492
BspT107I GGYRCC 1 cut(s) 186
BspTNI GGTCTC 1 cut(s) 161
BsrBI CCGCTC 2 cut(s) 90, 517
BsrFI RCCGGY 1 cut(s) 470
BsrI ACTGG 1 cut(s) 40
BssAI RCCGGY 1 cut(s) 470
BssECI CCNNGG 2 cut(s) 72, 171
BssMI GATC 2 cut(s) 409, 460
BssNAI GTATAC 1 cut(s) 150
BssNI GRCGYC 1 cut(s) 56
Bst1107I GTATAC 1 cut(s) 150
Bst2UI CCWGG 1 cut(s) 172
BstACI GRCGYC 1 cut(s) 56
BstBI TTCGAA 1 cut(s) 492
BstC8I GCNNGC 1 cut(s) 472
BstDEI CTNAG 2 cut(s) 195, 277
BstF5I GGATG 1 cut(s) 301
BstKTI GATC 2 cut(s) 412, 463
BstMAI GTCTC 2 cut(s) 161, 245
BstMBI GATC 2 cut(s) 409, 460
BstMWI GCNNNNNNNGC 1 cut(s) 162
BstNI CCWGG 1 cut(s) 172
BstSCI CCNGG 2 cut(s) 110, 170
BstV1I GCAGC 1 cut(s) 440
BstZ17I GTATAC 1 cut(s) 150
Bsu36I CCTNAGG 2 cut(s) 195, 277
BsuRI GGCC 2 cut(s) 79, 381
BtgZI GCGATG 1 cut(s) 386
BtsCI GGATG 1 cut(s) 301
Cac8I GCNNGC 1 cut(s) 472
Cfr10I RCCGGY 1 cut(s) 470
Cfr13I GGNCC 2 cut(s) 77, 97
CseI GACGC 1 cut(s) 45
Csp6I GTAC 3 cut(s) 43, 187, 205
CviQI GTAC 3 cut(s) 43, 187, 205
DdeI CTNAG 2 cut(s) 195, 277
DpnI GATC 2 cut(s) 411, 462
DpnII GATC 2 cut(s) 409, 460
EciI GGCGGA 1 cut(s) 386
Ecl136II GAGCTC 1 cut(s) 484
Eco24I GRGCYC 1 cut(s) 486
Eco31I GGTCTC 1 cut(s) 161
Eco47I GGWCC 1 cut(s) 97
Eco53kI GAGCTC 1 cut(s) 484
Eco81I CCTNAGG 2 cut(s) 195, 277
Eco88I CYCGRG 1 cut(s) 450
EcoICRI GAGCTC 1 cut(s) 484
EcoRII CCWGG 1 cut(s) 170
EcoT38I GRGCYC 1 cut(s) 486
FaiI YATR 5 cut(s) 15, 21, 35, 150, 523
FaqI GGGAC 4 cut(s) 188, 258, 323, 332
FauI CCCGC 2 cut(s) 83, 108
FblI GTMKAC 1 cut(s) 149
Fnu4HI GCNGC 3 cut(s) 104, 429, 518
FokI GGATG 1 cut(s) 308
FriOI GRGCYC 1 cut(s) 486
Fsp4HI GCNGC 3 cut(s) 104, 429, 518
GluI GCNGC 3 cut(s) 104, 429, 518
HaeIII GGCC 2 cut(s) 79, 381
HapII CCGG 3 cut(s) 112, 142, 471
HgaI GACGC 1 cut(s) 45
Hin1I GRCGYC 1 cut(s) 56
HinfI GANTC 4 cut(s) 299, 311, 323, 500
HpaII CCGG 3 cut(s) 112, 142, 471
HphI GGTGA 1 cut(s) 61
Hpy166II GTNNAC 2 cut(s) 69, 150
Hpy188I TCNGA 3 cut(s) 409, 460, 511
Hpy188III TCNNGA 1 cut(s) 118
Hpy8I GTNNAC 2 cut(s) 69, 150
Hpy99I CGWCG 3 cut(s) 55, 61, 515
HpyAV CCTTC 2 cut(s) 367, 371
HpyCH4IV ACGT 1 cut(s) 23
HpyF10VI GCNNNNNNNGC 1 cut(s) 162
HpyF3I CTNAG 2 cut(s) 195, 277
HpySE526I ACGT 1 cut(s) 23
Hsp92I GRCGYC 1 cut(s) 56
KpnI GGTACC 1 cut(s) 190
KroI GCCGGC 1 cut(s) 470
KroNI GCCGGC 1 cut(s) 472
Kzo9I GATC 2 cut(s) 409, 460
LmnI GCTCC 4 cut(s) 144, 399, 410, 481
Lsp1109I GCAGC 1 cut(s) 440
MaeII ACGT 1 cut(s) 23
MalI GATC 2 cut(s) 411, 462
MbiI CCGCTC 2 cut(s) 90, 517
MboI GATC 2 cut(s) 409, 460
MboII GAAGA 1 cut(s) 449
MhlI GDGCHC 1 cut(s) 486
MluCI AATT 1 cut(s) 488
MlyI GAGTC 3 cut(s) 305, 308, 509
MmeI TCCRAC 2 cut(s) 63, 75
MnlI CCTC 8 cut(s) 67, 190, 222, 286, 337, 340, 436, 459
MroNI GCCGGC 1 cut(s) 470
MseI TTAA 3 cut(s) 9, 161, 285
MspA1I CMGCKG 1 cut(s) 106
MspI CCGG 3 cut(s) 112, 142, 471
MspR9I CCNGG 2 cut(s) 112, 172
MvaI CCWGG 1 cut(s) 172
MwoI GCNNNNNNNGC 1 cut(s) 162
NaeI GCCGGC 1 cut(s) 472
NciI CCSGG 1 cut(s) 112
NdeII GATC 2 cut(s) 409, 460
NgoMIV GCCGGC 1 cut(s) 470
NlaIV GGNNCC 5 cut(s) 78, 99, 116, 188, 447
NmeAIII GCCGAG 1 cut(s) 523
NspV TTCGAA 1 cut(s) 492
PaeR7I CTCGAG 1 cut(s) 450
PdiI GCCGGC 1 cut(s) 472
PfeI GAWTC 1 cut(s) 323
PflFI GACNNNGTC 2 cut(s) 55, 352
PkrI GCNGC 3 cut(s) 105, 430, 519
PleI GAGTC 3 cut(s) 305, 307, 508
PpsI GAGTC 3 cut(s) 305, 307, 508
Psp124BI GAGCTC 1 cut(s) 486
Psp6I CCWGG 1 cut(s) 170
PspGI CCWGG 1 cut(s) 170
PspN4I GGNNCC 5 cut(s) 78, 99, 116, 188, 447
PspPI GGNCC 2 cut(s) 77, 97
PspXI VCTCGAGB 1 cut(s) 450
PsyI GACNNNGTC 2 cut(s) 55, 352
RsaI GTAC 3 cut(s) 44, 188, 206
RsaNI GTAC 3 cut(s) 43, 187, 205
SacI GAGCTC 1 cut(s) 486
SaqAI TTAA 3 cut(s) 9, 161, 285
SatI GCNGC 3 cut(s) 104, 429, 518
Sau3AI GATC 2 cut(s) 409, 460
Sau96I GGNCC 2 cut(s) 77, 97
SchI GAGTC 3 cut(s) 305, 308, 509
ScrFI CCNGG 2 cut(s) 112, 172
SduI GDGCHC 1 cut(s) 486
SetI ASST 8 cut(s) 26, 141, 173, 233, 396, 451, 457, 486
Sfr274I CTCGAG 1 cut(s) 450
SfuI TTCGAA 1 cut(s) 492
SinI GGWCC 1 cut(s) 97
SlaI CTCGAG 1 cut(s) 450
SmlI CTYRAG 1 cut(s) 450
SmoI CTYRAG 1 cut(s) 450
Sse9I AATT 1 cut(s) 488
SsiI CCGC 6 cut(s) 90, 101, 104, 156, 397, 517
SstI GAGCTC 1 cut(s) 486
StyD4I CCNGG 2 cut(s) 110, 170
TaiI ACGT 1 cut(s) 26
TaqI TCGA 3 cut(s) 451, 466, 492
TasI AATT 1 cut(s) 488
TatI WGTACW 2 cut(s) 42, 204
TauI GCSGC 2 cut(s) 106, 520
TfiI GAWTC 1 cut(s) 323
Tru1I TTAA 3 cut(s) 9, 161, 285
Tru9I TTAA 3 cut(s) 9, 161, 285
TseI GCWGC 1 cut(s) 428
TspDTI ATGAA 1 cut(s) 22
Tth111I GACNNNGTC 2 cut(s) 55, 352
VpaK11BI GGWCC 1 cut(s) 97
XapI RAATTY 1 cut(s) 488
XhoI CTCGAG 1 cut(s) 450
XmiI GTMKAC 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.