Rh6AG413600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0030738
Physical Location & Seq
Reverse (-)
60917830 .. 60920500
2671 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG413600.1

Sequence Viewer

Length: 192 bp
ATGCCGGCGTTTTGGTTCAAACATTTGACGAGTCTAACTGCAGCTAAAACGGCCCTAAAGCTCCGCCATCGCTCCGATCTAAAACGAATGGTGGCAGCACAAGAAGACGAGGAACCTCGAGCTTCCGATCATCGAGCCGGCGGCAAGGAGCTCAAATTCGAAGCAGAGTCGTTCTCCGACGAGCGGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

63

Amino Acids

7.24

Weight (kDa)

8.16

Isoelectric Point (pI)

47.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030738)

Species Orthologous Gene IDs
rosa_laevigata RLG00000014572
rosa_samantha Rh6AG413600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 184
AciI CCGC 3 cut(s) 64, 141, 184
AcsI RAATTY 1 cut(s) 155
AfiI CCNNNNNNNGG 1 cut(s) 183
AgsI TTSAA 1 cut(s) 19
AluBI AGCT 4 cut(s) 44, 61, 122, 151
AluI AGCT 4 cut(s) 44, 61, 122, 151
Alw21I GWGCWC 1 cut(s) 153
Ama87I CYCGRG 1 cut(s) 117
AoxI GGCC 1 cut(s) 51
ApeKI GCWGC 2 cut(s) 41, 95
ApoI RAATTY 1 cut(s) 155
AspS9I GGNCC 1 cut(s) 52
AsuII TTCGAA 1 cut(s) 159
AvaI CYCGRG 1 cut(s) 117
BanII GRGCYC 1 cut(s) 153
BbsI GAAGAC 1 cut(s) 111
Bbv12I GWGCWC 1 cut(s) 153
BbvI GCAGC 2 cut(s) 53, 107
BccI CCATC 1 cut(s) 75
BceAI ACGGC 1 cut(s) 66
BfmI CTRYAG 1 cut(s) 39
BisI GCNGC 4 cut(s) 42, 96, 142, 185
BlsI GCNGC 4 cut(s) 43, 97, 143, 186
BmeT110I CYCGRG 1 cut(s) 117
BmgT120I GGNCC 1 cut(s) 52
BmiI GGNNCC 1 cut(s) 114
BpiI GAAGAC 1 cut(s) 111
BplI GAGNNNNNCTC 2 cut(s) 158, 190
Bpu14I TTCGAA 1 cut(s) 159
Bsc4I CCNNNNNNNGG 1 cut(s) 183
Bse118I RCCGGY 2 cut(s) 4, 137
BseLI CCNNNNNNNGG 1 cut(s) 183
BseXI GCAGC 2 cut(s) 53, 107
BshFI GGCC 1 cut(s) 53
BsiHKAI GWGCWC 1 cut(s) 153
BsiHKCI CYCGRG 1 cut(s) 117
BsiSI CCGG 2 cut(s) 5, 138
BslI CCNNNNNNNGG 1 cut(s) 183
BsnI GGCC 1 cut(s) 53
BsoBI CYCGRG 1 cut(s) 117
Bsp119I TTCGAA 1 cut(s) 159
Bsp1286I GDGCHC 1 cut(s) 153
Bsp143I GATC 2 cut(s) 76, 127
BspACI CCGC 3 cut(s) 64, 141, 184
BspANI GGCC 1 cut(s) 53
BspLI GGNNCC 1 cut(s) 114
BspMAI CTGCAG 1 cut(s) 43
BspT104I TTCGAA 1 cut(s) 159
BsrBI CCGCTC 1 cut(s) 184
BsrFI RCCGGY 2 cut(s) 4, 137
BssAI RCCGGY 2 cut(s) 4, 137
BssMI GATC 2 cut(s) 76, 127
BstBI TTCGAA 1 cut(s) 159
BstC8I GCNNGC 2 cut(s) 6, 139
BstKTI GATC 2 cut(s) 79, 130
BstMBI GATC 2 cut(s) 76, 127
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstSFI CTRYAG 1 cut(s) 39
BstV1I GCAGC 2 cut(s) 53, 107
BstV2I GAAGAC 1 cut(s) 111
BsuRI GGCC 1 cut(s) 53
BtgZI GCGATG 1 cut(s) 53
Cac8I GCNNGC 2 cut(s) 6, 139
Cfr10I RCCGGY 2 cut(s) 4, 137
Cfr13I GGNCC 1 cut(s) 52
CviJI RGCY 7 cut(s) 44, 53, 61, 122, 137, 151, 187
CviKI_1 RGCY 7 cut(s) 44, 53, 61, 122, 137, 151, 187
DpnI GATC 2 cut(s) 78, 129
DpnII GATC 2 cut(s) 76, 127
EciI GGCGGA 1 cut(s) 53
Ecl136II GAGCTC 1 cut(s) 151
Eco24I GRGCYC 1 cut(s) 153
Eco53kI GAGCTC 1 cut(s) 151
Eco88I CYCGRG 1 cut(s) 117
EcoICRI GAGCTC 1 cut(s) 151
EcoT38I GRGCYC 1 cut(s) 153
FaiI YATR 1 cut(s) 190
Fnu4HI GCNGC 4 cut(s) 42, 96, 142, 185
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 4 cut(s) 42, 96, 142, 185
GluI GCNGC 4 cut(s) 42, 96, 142, 185
HaeIII GGCC 1 cut(s) 53
HapII CCGG 2 cut(s) 5, 138
HinfI GANTC 2 cut(s) 31, 167
HpaII CCGG 2 cut(s) 5, 138
Hpy188I TCNGA 3 cut(s) 76, 127, 178
Hpy99I CGWCG 1 cut(s) 182
HpyCH4V TGCA 1 cut(s) 41
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
KroI GCCGGC 2 cut(s) 4, 137
KroNI GCCGGC 2 cut(s) 6, 139
Kzo9I GATC 2 cut(s) 76, 127
LmnI GCTCC 3 cut(s) 66, 77, 148
LpnPI CCDG 2 cut(s) 18, 151
Lsp1109I GCAGC 2 cut(s) 53, 107
MalI GATC 2 cut(s) 78, 129
MbiI CCGCTC 1 cut(s) 184
MboI GATC 2 cut(s) 76, 127
MboII GAAGA 1 cut(s) 116
MhlI GDGCHC 1 cut(s) 153
MluCI AATT 1 cut(s) 155
MlyI GAGTC 2 cut(s) 40, 176
MnlI CCTC 2 cut(s) 103, 126
MroNI GCCGGC 2 cut(s) 4, 137
MspI CCGG 2 cut(s) 5, 138
MwoI GCNNNNNNNGC 1 cut(s) 50
NaeI GCCGGC 2 cut(s) 6, 139
NdeII GATC 2 cut(s) 76, 127
NgoMIV GCCGGC 2 cut(s) 4, 137
NlaIV GGNNCC 1 cut(s) 114
NspV TTCGAA 1 cut(s) 159
PaeR7I CTCGAG 1 cut(s) 117
PdiI GCCGGC 2 cut(s) 6, 139
PkrI GCNGC 4 cut(s) 43, 97, 143, 186
PleI GAGTC 2 cut(s) 39, 175
PpsI GAGTC 2 cut(s) 39, 175
Psp124BI GAGCTC 1 cut(s) 153
PspN4I GGNNCC 1 cut(s) 114
PspPI GGNCC 1 cut(s) 52
PspXI VCTCGAGB 1 cut(s) 117
PstI CTGCAG 1 cut(s) 43
SacI GAGCTC 1 cut(s) 153
SatI GCNGC 4 cut(s) 42, 96, 142, 185
Sau3AI GATC 2 cut(s) 76, 127
Sau96I GGNCC 1 cut(s) 52
SchI GAGTC 2 cut(s) 40, 176
SduI GDGCHC 1 cut(s) 153
SetI ASST 5 cut(s) 46, 63, 118, 124, 153
SfcI CTRYAG 1 cut(s) 39
Sfr274I CTCGAG 1 cut(s) 117
SfuI TTCGAA 1 cut(s) 159
SgeI CNNG 9 cut(s) 17, 42, 113, 121, 129, 131, 146, 150, 157
SlaI CTCGAG 1 cut(s) 117
SmlI CTYRAG 1 cut(s) 117
SmoI CTYRAG 1 cut(s) 117
Sse9I AATT 1 cut(s) 155
SsiI CCGC 3 cut(s) 64, 141, 184
SstI GAGCTC 1 cut(s) 153
TaqI TCGA 3 cut(s) 118, 133, 159
TasI AATT 1 cut(s) 155
TauI GCSGC 2 cut(s) 144, 187
TseI GCWGC 2 cut(s) 41, 95
XapI RAATTY 1 cut(s) 155
XhoI CTCGAG 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.