Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0030747

Physical Location & Seq

Genomic Coordinates Reverse (-)

55386390 .. 55386908

Gene Structure 519 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014607

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGCTCTGCAAGGGTGTTGTCCCTCTAGGAACTTTCAGTGACCTTATGATCTTGCAAATCAGCTGTTGTCATTCTATTGAGACCCTATTCACTGTAACGCTGATTGAACAGCTGGGAAACCTTGAAGAGCTTACTATCAGATATTGTTTACGATTGAAGGTGCTGATACAGGAAGAAGGGTCAATCCAGAGAGCTGAAGTCAGCCTTCCAAGACTAAAGAATCTGGAGTTGTATACTTTGTTGGAACTGAAGAGCATTTATAGTGAAGACATAATTTGCAATTCTTTGAGCACAATTACTGTTCAGAAATGTCCAGGTCTAAAGAAGCTACCTATCACCATATTGACAGATCAAGGAGATCCGCAGCGACAACCATCAACCACTCCACCAATCAAAGAAATCATAGCAGAGAGGTCGTGGTGGGATTCAGTAGAATTGGCTAATCGCGATGCAAAAACCTTCCTCTGGTCTAGACTAGTAGAGCCTACAATGATGTACTTGGAACTGGATGAACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0023052 GO:0043207 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

173

Amino Acids

19.64

Weight (kDa)

4.9

Isoelectric Point (pI)

47.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_RPS2	PF23247	7 - 110	7e-14	Plant disease resistance protein RPS2-like, leucine-rich repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0030747)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000014607
rosa_multiflora	Rmu_co8222438.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	233
AccII	CGCG	1 cut(s)	447
AciI	CCGC	1 cut(s)	362
AclWI	GGATC	1 cut(s)	353
AcuI	CTGAAG	2 cut(s)	216, 269
AfaI	GTAC	1 cut(s)	497
AfiI	CCNNNNNNNGG	1 cut(s)	465
AgsI	TTSAA	3 cut(s)	107, 125, 157
AhlI	ACTAGT	1 cut(s)	475
AjnI	CCWGG	1 cut(s)	313
AluBI	AGCT	5 cut(s)	63, 112, 130, 194, 328
AluI	AGCT	5 cut(s)	63, 112, 130, 194, 328
Alw21I	GWGCWC	1 cut(s)	293
Alw26I	GTCTC	1 cut(s)	74
AlwI	GGATC	1 cut(s)	353
ApeKI	GCWGC	1 cut(s)	364
AsuHPI	GGTGA	1 cut(s)	328
BbsI	GAAGAC	1 cut(s)	273
Bbv12I	GWGCWC	1 cut(s)	293
BbvI	GCAGC	1 cut(s)	376
BccI	CCATC	1 cut(s)	382
BcgI	CGANNNNNNTGC	2 cut(s)	396, 430
BciT130I	CCWGG	1 cut(s)	315
BcoDI	GTCTC	1 cut(s)	74
BcuI	ACTAGT	1 cut(s)	475
BfaI	CTAG	3 cut(s)	26, 471, 476
BisI	GCNGC	1 cut(s)	365
BlsI	GCNGC	1 cut(s)	366
Bme1390I	CCNGG	1 cut(s)	315
BmrFI	CCNGG	1 cut(s)	315
BmsI	GCATC	1 cut(s)	439
BpiI	GAAGAC	1 cut(s)	273
BpmI	CTGGAG	1 cut(s)	245
BsaI	GGTCTC	1 cut(s)	74
Bsc4I	CCNNNNNNNGG	1 cut(s)	465
Bse1I	ACTGG	1 cut(s)	510
BseBI	CCWGG	1 cut(s)	315
BseGI	GGATG	1 cut(s)	514
BseLI	CCNNNNNNNGG	1 cut(s)	465
BseNI	ACTGG	1 cut(s)	510
BseXI	GCAGC	1 cut(s)	376
BseYI	CCCAGC	1 cut(s)	112
Bsh1236I	CGCG	1 cut(s)	447
BsiHKAI	GWGCWC	1 cut(s)	293
BslFI	GGGAC	1 cut(s)	5
BslI	CCNNNNNNNGG	1 cut(s)	465
BsmAI	GTCTC	1 cut(s)	74
BsmFI	GGGAC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	74
Bsp1286I	GDGCHC	1 cut(s)	293
Bsp143I	GATC	3 cut(s)	48, 349, 358
Bsp68I	TCGCGA	1 cut(s)	447
BspACI	CCGC	1 cut(s)	362
BspFNI	CGCG	1 cut(s)	447
BspPI	GGATC	1 cut(s)	353
BspQI	GCTCTTC	2 cut(s)	120, 245
BspTNI	GGTCTC	1 cut(s)	74
BsrI	ACTGG	1 cut(s)	510
BssMI	GATC	3 cut(s)	48, 349, 358
BssNAI	GTATAC	1 cut(s)	234
Bst1107I	GTATAC	1 cut(s)	234
Bst2UI	CCWGG	1 cut(s)	315
Bst4CI	ACNGT	2 cut(s)	94, 301
Bst6I	CTCTTC	2 cut(s)	120, 245
BstF5I	GGATG	1 cut(s)	514
BstFNI	CGCG	1 cut(s)	447
BstKTI	GATC	3 cut(s)	51, 352, 361
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	3 cut(s)	48, 349, 358
BstNI	CCWGG	1 cut(s)	315
BstSCI	CCNGG	1 cut(s)	313
BstUI	CGCG	1 cut(s)	447
BstV1I	GCAGC	1 cut(s)	376
BstV2I	GAAGAC	1 cut(s)	273
BstX2I	RGATCY	1 cut(s)	358
BstYI	RGATCY	1 cut(s)	358
BstZ17I	GTATAC	1 cut(s)	234
BtgZI	GCGATG	1 cut(s)	462
BtsCI	GGATG	1 cut(s)	514
BtsIMutI	CAGTG	2 cut(s)	43, 90
BtuMI	TCGCGA	1 cut(s)	447
Csp6I	GTAC	1 cut(s)	496
CviJI	RGCY	8 cut(s)	63, 112, 130, 194, 204, 328, 440, 484
CviKI_1	RGCY	8 cut(s)	63, 112, 130, 194, 204, 328, 440, 484
CviQI	GTAC	1 cut(s)	496
DpnI	GATC	3 cut(s)	50, 351, 360
DpnII	GATC	3 cut(s)	48, 349, 358
Eam1104I	CTCTTC	2 cut(s)	120, 245
EarI	CTCTTC	2 cut(s)	120, 245
Eco31I	GGTCTC	1 cut(s)	74
Eco57I	CTGAAG	2 cut(s)	216, 269
EcoRII	CCWGG	1 cut(s)	313
FaiI	YATR	6 cut(s)	47, 234, 261, 272, 341, 404
FalI	AAGNNNNNCTT	2 cut(s)	189, 221
FaqI	GGGAC	1 cut(s)	5
FblI	GTMKAC	1 cut(s)	233
Fnu4HI	GCNGC	1 cut(s)	365
Fsp4HI	GCNGC	1 cut(s)	365
FspBI	CTAG	3 cut(s)	26, 471, 476
GluI	GCNGC	1 cut(s)	365
GsaI	CCCAGC	1 cut(s)	116
GsuI	CTGGAG	1 cut(s)	245
HinfI	GANTC	2 cut(s)	220, 425
HphI	GGTGA	1 cut(s)	328
Hpy166II	GTNNAC	2 cut(s)	149, 234
Hpy188I	TCNGA	3 cut(s)	140, 306, 518
Hpy188III	TCNNGA	4 cut(s)	187, 224, 446, 471
Hpy8I	GTNNAC	2 cut(s)	149, 234
HpyAV	CCTTC	4 cut(s)	151, 170, 215, 469
HpyCH4III	ACNGT	2 cut(s)	94, 301
HpyCH4V	TGCA	4 cut(s)	9, 55, 279, 452
Kzo9I	GATC	3 cut(s)	48, 349, 358
LguI	GCTCTTC	2 cut(s)	120, 245
LpnPI	CCDG	8 cut(s)	98, 155, 200, 209, 300, 327, 451, 491
Lsp1109I	GCAGC	1 cut(s)	376
LweI	GCATC	1 cut(s)	439
MaeI	CTAG	3 cut(s)	26, 471, 476
MaeIII	GTNAC	2 cut(s)	38, 94
MalI	GATC	3 cut(s)	50, 351, 360
MboI	GATC	3 cut(s)	48, 349, 358
MboII	GAAGA	4 cut(s)	137, 185, 262, 278
MflI	RGATCY	1 cut(s)	358
MhlI	GDGCHC	1 cut(s)	293
MluCI	AATT	4 cut(s)	273, 280, 294, 434
MmeI	TCCRAC	1 cut(s)	222
MnlI	CCTC	3 cut(s)	33, 405, 473
MspA1I	CMGCKG	2 cut(s)	63, 112
MspR9I	CCNGG	1 cut(s)	315
MvaI	CCWGG	1 cut(s)	315
MvnI	CGCG	1 cut(s)	447
NdeII	GATC	3 cut(s)	48, 349, 358
NmuCI	GTSAC	1 cut(s)	38
NruI	TCGCGA	1 cut(s)	447
PciSI	GCTCTTC	2 cut(s)	120, 245
PfeI	GAWTC	2 cut(s)	220, 425
PkrI	GCNGC	1 cut(s)	366
Psp6I	CCWGG	1 cut(s)	313
PspFI	CCCAGC	1 cut(s)	112
PspGI	CCWGG	1 cut(s)	313
PsuI	RGATCY	1 cut(s)	358
PvuII	CAGCTG	2 cut(s)	63, 112
RruI	TCGCGA	1 cut(s)	447
RsaI	GTAC	1 cut(s)	497
RsaNI	GTAC	1 cut(s)	496
SapI	GCTCTTC	2 cut(s)	120, 245
SatI	GCNGC	1 cut(s)	365
Sau3AI	GATC	3 cut(s)	48, 349, 358
ScrFI	CCNGG	1 cut(s)	315
SduI	GDGCHC	1 cut(s)	293
SfaNI	GCATC	1 cut(s)	439
SpeI	ACTAGT	1 cut(s)	475
Sse9I	AATT	4 cut(s)	273, 280, 294, 434
SsiI	CCGC	1 cut(s)	362
SspMI	CTAG	3 cut(s)	26, 471, 476
StyD4I	CCNGG	1 cut(s)	313
TaaI	ACNGT	2 cut(s)	94, 301
TasI	AATT	4 cut(s)	273, 280, 294, 434
TatI	WGTACW	1 cut(s)	495
TfiI	GAWTC	2 cut(s)	220, 425
TscAI	CASTG	2 cut(s)	43, 97
TseFI	GTSAC	1 cut(s)	38
TseI	GCWGC	1 cut(s)	364
Tsp45I	GTSAC	1 cut(s)	38
TspRI	CASTG	2 cut(s)	43, 97
XbaI	TCTAGA	1 cut(s)	470
XmiI	GTMKAC	1 cut(s)	233
XspI	CTAG	3 cut(s)	26, 471, 476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.