Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8222438.1

Orthogroup ID

OG0030747

Physical Location & Seq

Genomic Coordinates Forward (+)

24 .. 542

Gene Structure 519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8222438.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

atgctctgcaggggtgttgtccctctaggaactttcggtgaccttatgatcttgcaaatcagttgttgtcattctattgagactctattcactgtaacgctgattgaacagctcggaaaccttgaagaactcactatcagatattgtttaagattgaaggtgctgatacaggaagaagggtcaatccagagagctgaagtcagccttccaagacttaagaatctggaattgtatacgttgttggaactgaagagcatttatagtgaagacatgatttgcaattctttgagcacaattactgttcagaaatgtccaggtctaaagaagctacctatcaccatatcgacagatcaaggagatccacagcgacaaccatcaaccactccaccaatcaaagaaatcatagcagagagatggtggtgggattcagtagaattggctaatcccgatgcaaaaaccatcctctggcctagactggtagagcctacaatgatgtacttggaactggatgaactctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0023052 GO:0043207 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

172

Amino Acids

19.65

Weight (kDa)

4.8

Isoelectric Point (pI)

45.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030747)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000014607
rosa_multiflora	Rmu_co8222438.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	465
AccI	GTMKAC	1 cut(s)	233
AclWI	GGATC	1 cut(s)	353
AcuI	CTGAAG	2 cut(s)	216, 269
AfaI	GTAC	1 cut(s)	497
AfiI	CCNNNNNNNGG	1 cut(s)	465
AflII	CTTAAG	1 cut(s)	215
AgsI	TTSAA	3 cut(s)	107, 125, 157
AjnI	CCWGG	1 cut(s)	313
AluBI	AGCT	3 cut(s)	112, 194, 328
AluI	AGCT	3 cut(s)	112, 194, 328
Alw21I	GWGCWC	1 cut(s)	293
Alw26I	GTCTC	1 cut(s)	74
AlwI	GGATC	1 cut(s)	353
AoxI	GGCC	1 cut(s)	467
AsuHPI	GGTGA	2 cut(s)	50, 328
BbsI	GAAGAC	1 cut(s)	273
Bbv12I	GWGCWC	1 cut(s)	293
BccI	CCATC	3 cut(s)	382, 408, 467
BciT130I	CCWGG	1 cut(s)	315
BcoDI	GTCTC	1 cut(s)	74
BfaI	CTAG	2 cut(s)	26, 471
BfmI	CTRYAG	1 cut(s)	7
BfrI	CTTAAG	1 cut(s)	215
Bme1390I	CCNGG	1 cut(s)	315
BmrFI	CCNGG	1 cut(s)	315
BmsI	GCATC	1 cut(s)	439
BpiI	GAAGAC	1 cut(s)	273
Bsc4I	CCNNNNNNNGG	1 cut(s)	465
Bse1I	ACTGG	2 cut(s)	480, 510
BseBI	CCWGG	1 cut(s)	315
BseGI	GGATG	2 cut(s)	459, 514
BseLI	CCNNNNNNNGG	1 cut(s)	465
BseNI	ACTGG	2 cut(s)	480, 510
BshFI	GGCC	1 cut(s)	469
BsiHKAI	GWGCWC	1 cut(s)	293
BslFI	GGGAC	1 cut(s)	5
BslI	CCNNNNNNNGG	1 cut(s)	465
BsmAI	GTCTC	1 cut(s)	74
BsmFI	GGGAC	1 cut(s)	5
BsnI	GGCC	1 cut(s)	469
Bsp1286I	GDGCHC	1 cut(s)	293
Bsp143I	GATC	3 cut(s)	48, 349, 358
BspANI	GGCC	1 cut(s)	469
BspMAI	CTGCAG	1 cut(s)	11
BspPI	GGATC	1 cut(s)	353
BspQI	GCTCTTC	1 cut(s)	245
BspTI	CTTAAG	1 cut(s)	215
BsrI	ACTGG	2 cut(s)	480, 510
BssMI	GATC	3 cut(s)	48, 349, 358
BssNAI	GTATAC	1 cut(s)	234
Bst1107I	GTATAC	1 cut(s)	234
Bst2UI	CCWGG	1 cut(s)	315
Bst4CI	ACNGT	2 cut(s)	94, 301
Bst6I	CTCTTC	1 cut(s)	245
BstAFI	CTTAAG	1 cut(s)	215
BstEII	GGTNACC	1 cut(s)	38
BstF5I	GGATG	2 cut(s)	459, 514
BstKTI	GATC	3 cut(s)	51, 352, 361
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	3 cut(s)	48, 349, 358
BstNI	CCWGG	1 cut(s)	315
BstPI	GGTNACC	1 cut(s)	38
BstSCI	CCNGG	1 cut(s)	313
BstSFI	CTRYAG	1 cut(s)	7
BstV2I	GAAGAC	1 cut(s)	273
BstX2I	RGATCY	1 cut(s)	358
BstYI	RGATCY	1 cut(s)	358
BstZ17I	GTATAC	1 cut(s)	234
BsuRI	GGCC	1 cut(s)	469
BtsCI	GGATG	2 cut(s)	459, 514
BtsIMutI	CAGTG	1 cut(s)	90
Csp6I	GTAC	1 cut(s)	496
CviAII	CATG	1 cut(s)	271
CviJI	RGCY	7 cut(s)	112, 194, 204, 328, 440, 469, 484
CviKI_1	RGCY	7 cut(s)	112, 194, 204, 328, 440, 469, 484
CviQI	GTAC	1 cut(s)	496
DpnI	GATC	3 cut(s)	50, 351, 360
DpnII	GATC	3 cut(s)	48, 349, 358
Eam1104I	CTCTTC	1 cut(s)	245
EarI	CTCTTC	1 cut(s)	245
Eco57I	CTGAAG	2 cut(s)	216, 269
Eco91I	GGTNACC	1 cut(s)	38
EcoO65I	GGTNACC	1 cut(s)	38
EcoRII	CCWGG	1 cut(s)	313
FaeI	CATG	1 cut(s)	274
FaiI	YATR	6 cut(s)	47, 234, 261, 272, 341, 404
FalI	AAGNNNNNCTT	2 cut(s)	189, 221
FaqI	GGGAC	1 cut(s)	5
FatI	CATG	1 cut(s)	270
FblI	GTMKAC	1 cut(s)	233
FokI	GGATG	1 cut(s)	446
FspBI	CTAG	2 cut(s)	26, 471
HaeIII	GGCC	1 cut(s)	469
Hin1II	CATG	1 cut(s)	274
HinfI	GANTC	3 cut(s)	82, 220, 425
HphI	GGTGA	2 cut(s)	50, 328
Hpy166II	GTNNAC	1 cut(s)	234
Hpy188I	TCNGA	4 cut(s)	116, 140, 306, 518
Hpy188III	TCNNGA	3 cut(s)	187, 224, 446
Hpy8I	GTNNAC	1 cut(s)	234
HpyAV	CCTTC	3 cut(s)	151, 170, 215
HpyCH4III	ACNGT	2 cut(s)	94, 301
HpyCH4IV	ACGT	1 cut(s)	236
HpyCH4V	TGCA	4 cut(s)	9, 55, 279, 452
HpySE526I	ACGT	1 cut(s)	236
Hsp92II	CATG	1 cut(s)	274
Kzo9I	GATC	3 cut(s)	48, 349, 358
LguI	GCTCTTC	1 cut(s)	245
LpnPI	CCDG	8 cut(s)	155, 200, 209, 300, 327, 451, 461, 491
LweI	GCATC	1 cut(s)	439
MaeI	CTAG	2 cut(s)	26, 471
MaeII	ACGT	1 cut(s)	236
MaeIII	GTNAC	2 cut(s)	38, 94
MalI	GATC	3 cut(s)	50, 351, 360
MboI	GATC	3 cut(s)	48, 349, 358
MboII	GAAGA	4 cut(s)	137, 185, 262, 278
MflI	RGATCY	1 cut(s)	358
MhlI	GDGCHC	1 cut(s)	293
MluCI	AATT	4 cut(s)	227, 280, 294, 434
MlyI	GAGTC	1 cut(s)	76
MmeI	TCCRAC	1 cut(s)	222
MnlI	CCTC	2 cut(s)	33, 473
MseI	TTAA	2 cut(s)	149, 216
MspCI	CTTAAG	1 cut(s)	215
MspR9I	CCNGG	1 cut(s)	315
MvaI	CCWGG	1 cut(s)	315
NdeII	GATC	3 cut(s)	48, 349, 358
NlaIII	CATG	1 cut(s)	274
NmuCI	GTSAC	1 cut(s)	38
PciSI	GCTCTTC	1 cut(s)	245
PfeI	GAWTC	2 cut(s)	220, 425
PflMI	CCANNNNNTGG	1 cut(s)	465
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
Psp6I	CCWGG	1 cut(s)	313
PspEI	GGTNACC	1 cut(s)	38
PspGI	CCWGG	1 cut(s)	313
PstI	CTGCAG	1 cut(s)	11
PsuI	RGATCY	1 cut(s)	358
RsaI	GTAC	1 cut(s)	497
RsaNI	GTAC	1 cut(s)	496
SapI	GCTCTTC	1 cut(s)	245
SaqAI	TTAA	2 cut(s)	149, 216
Sau3AI	GATC	3 cut(s)	48, 349, 358
SchI	GAGTC	1 cut(s)	76
ScrFI	CCNGG	1 cut(s)	315
SduI	GDGCHC	1 cut(s)	293
SetI	ASST	9 cut(s)	45, 114, 123, 162, 196, 239, 319, 330, 334
SfaNI	GCATC	1 cut(s)	439
SfcI	CTRYAG	1 cut(s)	7
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	4 cut(s)	227, 280, 294, 434
SspMI	CTAG	2 cut(s)	26, 471
StyD4I	CCNGG	1 cut(s)	313
TaaI	ACNGT	2 cut(s)	94, 301
TaiI	ACGT	1 cut(s)	239
TaqI	TCGA	1 cut(s)	344
TasI	AATT	4 cut(s)	227, 280, 294, 434
TatI	WGTACW	1 cut(s)	495
TfiI	GAWTC	2 cut(s)	220, 425
Tru1I	TTAA	2 cut(s)	149, 216
Tru9I	TTAA	2 cut(s)	149, 216
TscAI	CASTG	1 cut(s)	97
TseFI	GTSAC	1 cut(s)	38
Tsp45I	GTSAC	1 cut(s)	38
TspRI	CASTG	1 cut(s)	97
Van91I	CCANNNNNTGG	1 cut(s)	465
Vha464I	CTTAAG	1 cut(s)	215
XmiI	GTMKAC	1 cut(s)	233
XspI	CTAG	2 cut(s)	26, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.