RLG00000014959

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0030707
Physical Location & Seq
Forward (+)
59977673 .. 59980934
3262 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014959

Sequence Viewer

Length: 450 bp
ATGATGATCAAGATTCAAGAGCAAGACTCTAATGAAGAACCTACACAAGGTTGTCAAGAAAACCAATATCGAATCAATGATTTACCAAAATTACCTGGGCTTTTCAAGAAGGATAGAAGAGGATTCACCATTGGGCCTGTCCATCTCCCCCTACAACGCCGGAGACGTCGCTGCACTTATCTGGAGCTAGACTTGAACGTGAGGAGGAGGTTGCTCCGGTACCTGGACATTGCTCTGGTCAATTTACAACCAGAGAATCTCGGGCTTGAGGCAGACACTGAGGGGCTCCATGAGGTGGTCATCACCACAGCGGAGTCTTCTAAGCGGAACAACCCCAAAATCGATTCTCAAGTTACTCATGCTACTACCTCTTCAACAATGAATTCCAGCCAGAAGAGTGTTGATACCCTTTCTCATGCTCTGGGAAAGGAAGTGGAACCCCAAACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

17.02

Weight (kDa)

7.82

Isoelectric Point (pI)

64.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030707)

Species Orthologous Gene IDs
rosa_laevigata RLG00000014959
rosa_roxburghii Rroxscaffold_7G00211440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 169
Acc65I GGTACC 1 cut(s) 219
AccB1I GGYRCC 1 cut(s) 219
AccB7I CCANNNNNTGG 1 cut(s) 295
AciI CCGC 2 cut(s) 311, 325
AcsI RAATTY 1 cut(s) 382
AcyI GRCGYC 1 cut(s) 166
AfaI GTAC 1 cut(s) 221
AfiI CCNNNNNNNGG 3 cut(s) 47, 223, 295
AgsI TTSAA 4 cut(s) 17, 106, 196, 375
AjnI CCWGG 2 cut(s) 94, 222
AluBI AGCT 1 cut(s) 187
AluI AGCT 1 cut(s) 187
Alw26I GTCTC 1 cut(s) 157
AlwNI CAGNNNCTG 1 cut(s) 278
Ama87I CYCGRG 1 cut(s) 260
AoxI GGCC 1 cut(s) 134
ApeKI GCWGC 1 cut(s) 171
ApoI RAATTY 1 cut(s) 382
Asp718I GGTACC 1 cut(s) 219
AspS9I GGNCC 1 cut(s) 134
AsuHPI GGTGA 2 cut(s) 118, 295
AvaI CYCGRG 1 cut(s) 260
BanI GGYRCC 1 cut(s) 219
BanII GRGCYC 1 cut(s) 288
BbsI GAAGAC 1 cut(s) 309
BbvI GCAGC 1 cut(s) 158
BccI CCATC 1 cut(s) 150
BciT130I CCWGG 2 cut(s) 96, 224
BclI TGATCA 1 cut(s) 6
BcoDI GTCTC 1 cut(s) 157
BfaI CTAG 2 cut(s) 188, 448
BisI GCNGC 1 cut(s) 172
BlsI GCNGC 1 cut(s) 173
Bme1390I CCNGG 2 cut(s) 96, 224
BmeT110I CYCGRG 1 cut(s) 260
BmgT120I GGNCC 1 cut(s) 134
BmiI GGNNCC 3 cut(s) 221, 287, 438
BmrFI CCNGG 2 cut(s) 96, 224
BpiI GAAGAC 1 cut(s) 309
BplI GAGNNNNNCTC 2 cut(s) 11, 43
BpmI CTGGAG 1 cut(s) 203
BpuEI CTTGAG 2 cut(s) 287, 333
Bsa29I ATCGAT 1 cut(s) 342
BsaHI GRCGYC 1 cut(s) 166
BsaJI CCNNGG 1 cut(s) 95
BsaWI WCCGGW 1 cut(s) 216
Bsc4I CCNNNNNNNGG 3 cut(s) 47, 223, 295
Bse3DI GCAATG 1 cut(s) 228
BseBI CCWGG 2 cut(s) 96, 224
BseCI ATCGAT 1 cut(s) 342
BseDI CCNNGG 1 cut(s) 95
BseLI CCNNNNNNNGG 3 cut(s) 47, 223, 295
BseMI GCAATG 1 cut(s) 228
BseMII CTCAG 1 cut(s) 270
BseRI GAGGAG 2 cut(s) 217, 220
BseXI GCAGC 1 cut(s) 158
BsgI GTGCAG 1 cut(s) 157
BshFI GGCC 1 cut(s) 136
BshNI GGYRCC 1 cut(s) 219
BshVI ATCGAT 1 cut(s) 342
BsiHKCI CYCGRG 1 cut(s) 260
BsiSI CCGG 2 cut(s) 160, 217
BslI CCNNNNNNNGG 3 cut(s) 47, 223, 295
BsmAI GTCTC 1 cut(s) 157
BsmBI CGTCTC 1 cut(s) 157
BsnI GGCC 1 cut(s) 136
BsoBI CYCGRG 1 cut(s) 260
Bsp1286I GDGCHC 1 cut(s) 288
Bsp143I GATC 1 cut(s) 6
BspACI CCGC 2 cut(s) 311, 325
BspANI GGCC 1 cut(s) 136
BspCNI CTCAG 1 cut(s) 271
BspDI ATCGAT 1 cut(s) 342
BspLI GGNNCC 3 cut(s) 221, 287, 438
BspT107I GGYRCC 1 cut(s) 219
BsrDI GCAATG 1 cut(s) 228
BssECI CCNNGG 1 cut(s) 95
BssMI GATC 1 cut(s) 6
BssNI GRCGYC 1 cut(s) 166
Bst2UI CCWGG 2 cut(s) 96, 224
Bst6I CTCTTC 3 cut(s) 112, 376, 389
BstACI GRCGYC 1 cut(s) 166
BstDEI CTNAG 2 cut(s) 279, 321
BstENI CCTNNNNNAGG 1 cut(s) 45
BstKTI GATC 1 cut(s) 9
BstMAI GTCTC 1 cut(s) 157
BstMBI GATC 1 cut(s) 6
BstNI CCWGG 2 cut(s) 96, 224
BstSCI CCNGG 2 cut(s) 94, 222
BstV1I GCAGC 1 cut(s) 158
BstV2I GAAGAC 1 cut(s) 309
Bsu15I ATCGAT 1 cut(s) 342
BsuRI GGCC 1 cut(s) 136
BsuTUI ATCGAT 1 cut(s) 342
BtsIMutI CAGTG 1 cut(s) 276
CaiI CAGNNNCTG 1 cut(s) 278
Cfr13I GGNCC 1 cut(s) 134
ClaI ATCGAT 1 cut(s) 342
Csp6I GTAC 1 cut(s) 220
CviAII CATG 3 cut(s) 290, 359, 416
CviJI RGCY 6 cut(s) 100, 136, 187, 265, 286, 390
CviKI_1 RGCY 6 cut(s) 100, 136, 187, 265, 286, 390
CviQI GTAC 1 cut(s) 220
DdeI CTNAG 2 cut(s) 279, 321
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
Eam1104I CTCTTC 3 cut(s) 112, 376, 389
EarI CTCTTC 3 cut(s) 112, 376, 389
Eco24I GRGCYC 1 cut(s) 288
Eco88I CYCGRG 1 cut(s) 260
EcoNI CCTNNNNNAGG 1 cut(s) 45
EcoRI GAATTC 1 cut(s) 382
EcoRII CCWGG 2 cut(s) 94, 222
EcoT38I GRGCYC 1 cut(s) 288
Esp3I CGTCTC 1 cut(s) 157
FaeI CATG 3 cut(s) 293, 362, 419
FaiI YATR 3 cut(s) 291, 360, 417
FatI CATG 3 cut(s) 289, 358, 415
FbaI TGATCA 1 cut(s) 6
Fnu4HI GCNGC 1 cut(s) 172
FriOI GRGCYC 1 cut(s) 288
Fsp4HI GCNGC 1 cut(s) 172
FspBI CTAG 2 cut(s) 188, 448
GluI GCNGC 1 cut(s) 172
GsuI CTGGAG 1 cut(s) 203
HaeIII GGCC 1 cut(s) 136
HapII CCGG 2 cut(s) 160, 217
Hin1I GRCGYC 1 cut(s) 166
Hin1II CATG 3 cut(s) 293, 362, 419
HinfI GANTC 7 cut(s) 13, 26, 72, 123, 256, 314, 344
HpaII CCGG 2 cut(s) 160, 217
HphI GGTGA 2 cut(s) 118, 295
Hpy188III TCNNGA 5 cut(s) 10, 17, 56, 106, 182
Hpy99I CGWCG 1 cut(s) 171
HpyAV CCTTC 1 cut(s) 103
HpyCH4IV ACGT 2 cut(s) 166, 198
HpyCH4V TGCA 1 cut(s) 174
HpyF3I CTNAG 2 cut(s) 279, 321
HpySE526I ACGT 2 cut(s) 166, 198
Hsp92I GRCGYC 1 cut(s) 166
Hsp92II CATG 3 cut(s) 293, 362, 419
KpnI GGTACC 1 cut(s) 223
Ksp22I TGATCA 1 cut(s) 6
Kzo9I GATC 1 cut(s) 6
LmnI GCTCC 3 cut(s) 184, 219, 291
Lsp1109I GCAGC 1 cut(s) 158
MaeI CTAG 2 cut(s) 188, 448
MaeII ACGT 2 cut(s) 166, 198
MaeIII GTNAC 1 cut(s) 352
MalI GATC 1 cut(s) 8
MboI GATC 1 cut(s) 6
MboII GAAGA 5 cut(s) 47, 129, 309, 363, 406
MhlI GDGCHC 1 cut(s) 288
MluCI AATT 3 cut(s) 89, 241, 382
MlyI GAGTC 2 cut(s) 20, 323
MnlI CCTC 8 cut(s) 113, 195, 198, 201, 262, 274, 286, 379
MspA1I CMGCKG 1 cut(s) 311
MspI CCGG 2 cut(s) 160, 217
MspR9I CCNGG 2 cut(s) 96, 224
MvaI CCWGG 2 cut(s) 96, 224
NdeII GATC 1 cut(s) 6
NlaIII CATG 3 cut(s) 293, 362, 419
NlaIV GGNNCC 3 cut(s) 221, 287, 438
PcsI WCGNNNNNNNCGW 1 cut(s) 163
PfeI GAWTC 5 cut(s) 13, 72, 123, 256, 344
PflMI CCANNNNNTGG 1 cut(s) 295
PkrI GCNGC 1 cut(s) 173
PleI GAGTC 2 cut(s) 20, 322
PpsI GAGTC 2 cut(s) 20, 322
Psp6I CCWGG 2 cut(s) 94, 222
PspGI CCWGG 2 cut(s) 94, 222
PspN4I GGNNCC 3 cut(s) 221, 287, 438
PspPI GGNCC 1 cut(s) 134
PstNI CAGNNNCTG 1 cut(s) 278
RsaI GTAC 1 cut(s) 221
RsaNI GTAC 1 cut(s) 220
SatI GCNGC 1 cut(s) 172
Sau3AI GATC 1 cut(s) 6
Sau96I GGNCC 1 cut(s) 134
SchI GAGTC 2 cut(s) 20, 323
ScrFI CCNGG 2 cut(s) 96, 224
SduI GDGCHC 1 cut(s) 288
SmlI CTYRAG 2 cut(s) 266, 348
SmoI CTYRAG 2 cut(s) 266, 348
Sse9I AATT 3 cut(s) 89, 241, 382
SsiI CCGC 2 cut(s) 311, 325
SspMI CTAG 2 cut(s) 188, 448
StyD4I CCNGG 2 cut(s) 94, 222
TaiI ACGT 2 cut(s) 169, 201
TaqI TCGA 2 cut(s) 70, 342
TasI AATT 3 cut(s) 89, 241, 382
TfiI GAWTC 5 cut(s) 13, 72, 123, 256, 344
TscAI CASTG 1 cut(s) 283
TseI GCWGC 1 cut(s) 171
TspDTI ATGAA 2 cut(s) 48, 395
TspRI CASTG 1 cut(s) 283
Van91I CCANNNNNTGG 1 cut(s) 295
XagI CCTNNNNNAGG 1 cut(s) 45
XapI RAATTY 1 cut(s) 382
XspI CTAG 2 cut(s) 188, 448
ZraI GACGTC 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.