Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0030707

Physical Location & Seq

Genomic Coordinates Forward (+)

61872253 .. 61873869

Gene Structure 1617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00211440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGAGAAGACGGGGCGATCGCGGTGTCGGCGATGGACGCGTTCGAGAAACTGGAGAAGGTTGGAGAAGGGACCTATGGCAAGGTTTACAGAGCCGAGAGAAGGCCATCGGCAAGATTGTCGCCCTAAAAAAGACTCGCCTCCACGAGGACGAAGAAGGCGTCCCTCCCACCACTCTCTGCGAGATAGGTTGATGGATGTGAAGCAAGGCACGAATAAGGAAGGCAAGACGTACTGCCCTACTTGGTCTGAATTCAATACATCTACTAATACCATGAAAGTATGTGATGATGCAGAGTCTGATGTACCAACTCTGCAAAGGTGTTGCCTTCTGCCATGGTCATGGAATCTTACACGGAGTATGATCCTTAAGATTGAGGATCTTGGACTGGCTCAAGCATTTACTCTGCCCATCAAGAAGTATACTCATGAGGTAGTGCATGGGCACCAGAAGTCCTTCTGGGATCTACACGTTACTCAACTGAGTGGATATTTGTTACCTGGGCTTTTCAAGAAGGATAGAAGAGGATTCACCATTGGGCCTGTCCTTCTCCCCTTCTCCGCCGTAGACGTCGTTGCAATTATCTGGAGCGCTAGAGCTAGAGTGCTAGACTTGAACGTGAGGAGGAGGTTGCTCCAGTACCTGGACATTGCTCCGGTCAATTTACAACCAGAGAGTCTCAGGCTTGAGGTAAACACTGAGGGGCTCCATGAGGTGGTCGTTACCACAGCGGAGGCTTCTAAGAGGAACAACCCCAAAATGGATTCTCAAGTTACTCATGCTACTACCTCTTCAACGATGAATTCCATCCAGAAGAATGGTGATACCCTTTCTCATGCTCTGGGAAAGGAAGTGGAACCCCAAACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000278 GO:0000307 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0008284 GO:0009719 GO:0009725 GO:0009755 GO:0009934 GO:0009987 GO:0010033 GO:0010389 GO:0010468 GO:0010564 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0022603 GO:0023052 GO:0030332 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0036211 GO:0042127 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044843 GO:0046777 GO:0048509 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051716 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0070887 GO:0071310 GO:0071495 GO:0071704 GO:0097472 GO:0140096 GO:1901564 GO:1901987 GO:1901990 GO:1902494 GO:1902554 GO:1902749 GO:1902911 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

289

Amino Acids

33.23

Weight (kDa)

9.95

Isoelectric Point (pI)

56.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030707)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000014959
rosa_roxburghii	Rroxscaffold_7G00211440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	573
AccB1I	GGYRCC	1 cut(s)	444
AccB7I	CCANNNNNTGG	2 cut(s)	643, 715
AccI	GTMKAC	2 cut(s)	422, 567
AccII	CGCG	2 cut(s)	22, 40
AciI	CCGC	3 cut(s)	22, 561, 731
AclWI	GGATC	3 cut(s)	358, 387, 471
AcsI	RAATTY	2 cut(s)	251, 802
AcyI	GRCGYC	2 cut(s)	160, 570
AfaI	GTAC	3 cut(s)	233, 306, 641
AfeI	AGCGCT	1 cut(s)	592
AfiI	CCNNNNNNNGG	5 cut(s)	101, 146, 643, 715, 760
AflII	CTTAAG	1 cut(s)	368
AflIII	ACRYGT	2 cut(s)	38, 469
AgsI	TTSAA	4 cut(s)	256, 511, 616, 795
AjnI	CCWGG	2 cut(s)	499, 642
AluBI	AGCT	1 cut(s)	599
AluI	AGCT	1 cut(s)	599
Alw26I	GTCTC	1 cut(s)	683
AlwI	GGATC	3 cut(s)	358, 387, 471
AlwNI	CAGNNNCTG	2 cut(s)	299, 643
Aor51HI	AGCGCT	1 cut(s)	592
AoxI	GGCC	2 cut(s)	103, 539
ApoI	RAATTY	2 cut(s)	251, 802
ArsI	GACNNNNNNTTYG	2 cut(s)	145, 177
AsiSI	GCGATCGC	1 cut(s)	20
Asp700I	GAANNNNTTC	1 cut(s)	455
AspLEI	GCGC	1 cut(s)	593
AspS9I	GGNCC	2 cut(s)	71, 539
AsuHPI	GGTGA	2 cut(s)	523, 833
AvaII	GGWCC	1 cut(s)	71
BaeGI	GKGCMC	1 cut(s)	447
BanI	GGYRCC	1 cut(s)	444
BanII	GRGCYC	1 cut(s)	708
BauI	CACGAG	1 cut(s)	144
BbsI	GAAGAC	1 cut(s)	14
BccI	CCATC	5 cut(s)	27, 114, 187, 419, 815
BceAI	ACGGC	1 cut(s)	548
BcgI	CGANNNNNNTGC	2 cut(s)	101, 135
BciT130I	CCWGG	2 cut(s)	501, 644
BcoDI	GTCTC	1 cut(s)	683
BfaI	CTAG	4 cut(s)	594, 600, 608, 868
BfoI	RGCGCY	1 cut(s)	594
BfrI	CTTAAG	1 cut(s)	368
Bme1390I	CCNGG	2 cut(s)	501, 644
Bme18I	GGWCC	1 cut(s)	71
BmgT120I	GGNCC	2 cut(s)	71, 539
BmiI	GGNNCC	4 cut(s)	72, 446, 707, 858
BmrFI	CCNGG	2 cut(s)	501, 644
BmsI	GCATC	1 cut(s)	280
BpiI	GAAGAC	1 cut(s)	14
BpmI	CTGGAG	3 cut(s)	73, 607, 620
BpuEI	CTTGAG	3 cut(s)	378, 707, 753
BsaHI	GRCGYC	2 cut(s)	160, 570
BsaJI	CCNNGG	2 cut(s)	335, 500
BsaWI	WCCGGW	1 cut(s)	655
Bsc4I	CCNNNNNNNGG	5 cut(s)	101, 146, 643, 715, 760
Bse1I	ACTGG	3 cut(s)	56, 393, 637
Bse3DI	GCAATG	1 cut(s)	648
BseBI	CCWGG	2 cut(s)	501, 644
BseDI	CCNNGG	2 cut(s)	335, 500
BseGI	GGATG	2 cut(s)	202, 807
BseLI	CCNNNNNNNGG	5 cut(s)	101, 146, 643, 715, 760
BseMI	GCAATG	1 cut(s)	648
BseMII	CTCAG	3 cut(s)	473, 690, 694
BseNI	ACTGG	3 cut(s)	56, 393, 637
BseRI	GAGGAG	2 cut(s)	637, 640
BseSI	GKGCMC	1 cut(s)	447
Bsh1236I	CGCG	2 cut(s)	22, 40
Bsh1285I	CGRYCG	1 cut(s)	20
BshFI	GGCC	2 cut(s)	105, 541
BshNI	GGYRCC	1 cut(s)	444
BsiEI	CGRYCG	1 cut(s)	20
BsiSI	CCGG	1 cut(s)	656
BslFI	GGGAC	2 cut(s)	84, 147
BslI	CCNNNNNNNGG	5 cut(s)	101, 146, 643, 715, 760
BsmAI	GTCTC	1 cut(s)	683
BsmFI	GGGAC	2 cut(s)	84, 147
BsnI	GGCC	2 cut(s)	105, 541
Bsp1286I	GDGCHC	2 cut(s)	447, 708
Bsp143I	GATC	4 cut(s)	17, 363, 379, 463
Bsp19I	CCATGG	1 cut(s)	335
BspACI	CCGC	3 cut(s)	22, 561, 731
BspANI	GGCC	2 cut(s)	105, 541
BspCNI	CTCAG	3 cut(s)	474, 691, 693
BspFNI	CGCG	2 cut(s)	22, 40
BspHI	TCATGA	1 cut(s)	427
BspLI	GGNNCC	4 cut(s)	72, 446, 707, 858
BspPI	GGATC	3 cut(s)	358, 387, 471
BspT107I	GGYRCC	1 cut(s)	444
BspTI	CTTAAG	1 cut(s)	368
BsrDI	GCAATG	1 cut(s)	648
BsrI	ACTGG	3 cut(s)	56, 393, 637
BssECI	CCNNGG	2 cut(s)	335, 500
BssMI	GATC	4 cut(s)	17, 363, 379, 463
BssNAI	GTATAC	1 cut(s)	423
BssNI	GRCGYC	2 cut(s)	160, 570
BssSI	CACGAG	1 cut(s)	144
BssT1I	CCWWGG	1 cut(s)	335
Bst1107I	GTATAC	1 cut(s)	423
Bst2BI	CACGAG	1 cut(s)	144
Bst2UI	CCWGG	2 cut(s)	501, 644
Bst6I	CTCTTC	2 cut(s)	517, 796
BstACI	GRCGYC	2 cut(s)	160, 570
BstAFI	CTTAAG	1 cut(s)	368
BstDEI	CTNAG	4 cut(s)	482, 680, 699, 741
BstDSI	CCRYGG	1 cut(s)	335
BstENI	CCTNNNNNAGG	1 cut(s)	144
BstF5I	GGATG	2 cut(s)	202, 807
BstFNI	CGCG	2 cut(s)	22, 40
BstH2I	RGCGCY	1 cut(s)	594
BstHHI	GCGC	1 cut(s)	593
BstKTI	GATC	4 cut(s)	20, 366, 382, 466
BstMAI	GTCTC	1 cut(s)	683
BstMBI	GATC	4 cut(s)	17, 363, 379, 463
BstMCI	CGRYCG	1 cut(s)	20
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 37
BstNI	CCWGG	2 cut(s)	501, 644
BstSCI	CCNGG	2 cut(s)	499, 642
BstSLI	GKGCMC	1 cut(s)	447
BstUI	CGCG	2 cut(s)	22, 40
BstV2I	GAAGAC	1 cut(s)	14
BstX2I	RGATCY	2 cut(s)	379, 463
BstXI	CCANNNNNNTGG	2 cut(s)	342, 818
BstYI	RGATCY	2 cut(s)	379, 463
BstZ17I	GTATAC	1 cut(s)	423
BsuRI	GGCC	2 cut(s)	105, 541
BtgI	CCRYGG	1 cut(s)	335
BtgZI	GCGATG	1 cut(s)	46
BtsCI	GGATG	2 cut(s)	202, 807
BtsIMutI	CAGTG	1 cut(s)	696
CaiI	CAGNNNCTG	2 cut(s)	299, 643
CciI	TCATGA	1 cut(s)	427
CfoI	GCGC	1 cut(s)	593
Cfr13I	GGNCC	2 cut(s)	71, 539
CseI	GACGC	2 cut(s)	46, 149
Csp6I	GTAC	3 cut(s)	232, 305, 640
CviAII	CATG	8 cut(s)	274, 336, 342, 428, 440, 710, 779, 836
CviJI	RGCY	9 cut(s)	94, 105, 392, 505, 541, 599, 685, 706, 737
CviKI_1	RGCY	9 cut(s)	94, 105, 392, 505, 541, 599, 685, 706, 737
CviQI	GTAC	3 cut(s)	232, 305, 640
DdeI	CTNAG	4 cut(s)	482, 680, 699, 741
DpnI	GATC	4 cut(s)	19, 365, 381, 465
DpnII	GATC	4 cut(s)	17, 363, 379, 463
Eam1104I	CTCTTC	2 cut(s)	517, 796
EarI	CTCTTC	2 cut(s)	517, 796
EciI	GGCGGA	1 cut(s)	550
Eco130I	CCWWGG	1 cut(s)	335
Eco24I	GRGCYC	1 cut(s)	708
Eco47I	GGWCC	1 cut(s)	71
Eco47III	AGCGCT	1 cut(s)	592
EcoNI	CCTNNNNNAGG	1 cut(s)	144
EcoO109I	RGGNCCY	1 cut(s)	71
EcoRI	GAATTC	2 cut(s)	251, 802
EcoRII	CCWGG	2 cut(s)	499, 642
EcoT14I	CCWWGG	1 cut(s)	335
EcoT38I	GRGCYC	1 cut(s)	708
ErhI	CCWWGG	1 cut(s)	335
FaeI	CATG	8 cut(s)	277, 339, 345, 431, 443, 713, 782, 839
FaqI	GGGAC	2 cut(s)	84, 147
FatI	CATG	8 cut(s)	273, 335, 341, 427, 439, 709, 778, 835
FblI	GTMKAC	2 cut(s)	422, 567
FokI	GGATG	2 cut(s)	209, 794
FriOI	GRGCYC	1 cut(s)	708
FspBI	CTAG	4 cut(s)	594, 600, 608, 868
GlaI	GCGC	1 cut(s)	592
GsuI	CTGGAG	3 cut(s)	73, 607, 620
HaeII	RGCGCY	1 cut(s)	594
HaeIII	GGCC	2 cut(s)	105, 541
HapII	CCGG	1 cut(s)	656
HgaI	GACGC	2 cut(s)	46, 149
HhaI	GCGC	1 cut(s)	593
Hin1I	GRCGYC	2 cut(s)	160, 570
Hin1II	CATG	8 cut(s)	277, 339, 345, 431, 443, 713, 782, 839
Hin6I	GCGC	1 cut(s)	591
HinP1I	GCGC	1 cut(s)	591
HinfI	GANTC	6 cut(s)	134, 296, 346, 528, 676, 764
HpaII	CCGG	1 cut(s)	656
HphI	GGTGA	2 cut(s)	523, 833
Hpy166II	GTNNAC	4 cut(s)	87, 423, 568, 694
Hpy188I	TCNGA	2 cut(s)	250, 301
Hpy188III	TCNNGA	6 cut(s)	45, 415, 428, 511, 586, 811
Hpy8I	GTNNAC	4 cut(s)	87, 423, 568, 694
Hpy99I	CGWCG	1 cut(s)	575
HpyCH4IV	ACGT	4 cut(s)	230, 471, 570, 618
HpyCH4V	TGCA	4 cut(s)	293, 316, 439, 578
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 37
HpyF3I	CTNAG	4 cut(s)	482, 680, 699, 741
HpySE526I	ACGT	4 cut(s)	230, 471, 570, 618
Hsp92I	GRCGYC	2 cut(s)	160, 570
Hsp92II	CATG	8 cut(s)	277, 339, 345, 431, 443, 713, 782, 839
HspAI	GCGC	1 cut(s)	591
Kzo9I	GATC	4 cut(s)	17, 363, 379, 463
LmnI	GCTCC	4 cut(s)	588, 639, 658, 711
LweI	GCATC	1 cut(s)	280
MaeI	CTAG	4 cut(s)	594, 600, 608, 868
MaeII	ACGT	4 cut(s)	230, 471, 570, 618
MaeIII	GTNAC	4 cut(s)	472, 495, 721, 772
MalI	GATC	4 cut(s)	19, 365, 381, 465
MboI	GATC	4 cut(s)	17, 363, 379, 463
MboII	GAAGA	5 cut(s)	19, 165, 534, 783, 826
MflI	RGATCY	2 cut(s)	379, 463
MhlI	GDGCHC	2 cut(s)	447, 708
MluCI	AATT	4 cut(s)	251, 579, 661, 802
MluI	ACGCGT	1 cut(s)	38
MlyI	GAGTC	3 cut(s)	128, 305, 685
MmeI	TCCRAC	1 cut(s)	42
MroXI	GAANNNNTTC	1 cut(s)	455
MseI	TTAA	1 cut(s)	369
MslI	CAYNNNNRTG	1 cut(s)	340
MspA1I	CMGCKG	1 cut(s)	731
MspCI	CTTAAG	1 cut(s)	368
MspI	CCGG	1 cut(s)	656
MspR9I	CCNGG	2 cut(s)	501, 644
MvaI	CCWGG	2 cut(s)	501, 644
MvnI	CGCG	2 cut(s)	22, 40
MwoI	GCNNNNNNNGC	2 cut(s)	28, 37
NcoI	CCATGG	1 cut(s)	335
NdeII	GATC	4 cut(s)	17, 363, 379, 463
NlaIII	CATG	8 cut(s)	277, 339, 345, 431, 443, 713, 782, 839
NlaIV	GGNNCC	4 cut(s)	72, 446, 707, 858
NmeAIII	GCCGAG	1 cut(s)	120
PagI	TCATGA	1 cut(s)	427
PcsI	WCGNNNNNNNCGW	1 cut(s)	157
PdmI	GAANNNNTTC	1 cut(s)	455
PfeI	GAWTC	3 cut(s)	346, 528, 764
PflMI	CCANNNNNTGG	2 cut(s)	643, 715
Ple19I	CGATCG	1 cut(s)	20
PleI	GAGTC	3 cut(s)	128, 304, 684
PpsI	GAGTC	3 cut(s)	128, 304, 684
PpuMI	RGGWCCY	1 cut(s)	71
Psp5II	RGGWCCY	1 cut(s)	71
Psp6I	CCWGG	2 cut(s)	499, 642
PspGI	CCWGG	2 cut(s)	499, 642
PspN4I	GGNNCC	4 cut(s)	72, 446, 707, 858
PspPI	GGNCC	2 cut(s)	71, 539
PspPPI	RGGWCCY	1 cut(s)	71
PstNI	CAGNNNCTG	2 cut(s)	299, 643
PsuI	RGATCY	2 cut(s)	379, 463
PvuI	CGATCG	1 cut(s)	20
RgaI	GCGATCGC	1 cut(s)	20
RsaI	GTAC	3 cut(s)	233, 306, 641
RsaNI	GTAC	3 cut(s)	232, 305, 640
RseI	CAYNNNNRTG	1 cut(s)	340
SaqAI	TTAA	1 cut(s)	369
Sau3AI	GATC	4 cut(s)	17, 363, 379, 463
Sau96I	GGNCC	2 cut(s)	71, 539
SchI	GAGTC	3 cut(s)	128, 305, 685
ScrFI	CCNGG	2 cut(s)	501, 644
SduI	GDGCHC	2 cut(s)	447, 708
SfaAI	GCGATCGC	1 cut(s)	20
SfaNI	GCATC	1 cut(s)	280
SgfI	GCGATCGC	1 cut(s)	20
SinI	GGWCC	1 cut(s)	71
SmiMI	CAYNNNNRTG	1 cut(s)	340
SmlI	CTYRAG	4 cut(s)	368, 393, 686, 768
SmoI	CTYRAG	4 cut(s)	368, 393, 686, 768
Sse9I	AATT	4 cut(s)	251, 579, 661, 802
SsiI	CCGC	3 cut(s)	22, 561, 731
SspMI	CTAG	4 cut(s)	594, 600, 608, 868
StyD4I	CCNGG	2 cut(s)	499, 642
StyI	CCWWGG	1 cut(s)	335
TaiI	ACGT	4 cut(s)	233, 474, 573, 621
TaqI	TCGA	1 cut(s)	44
TasI	AATT	4 cut(s)	251, 579, 661, 802
TfiI	GAWTC	3 cut(s)	346, 528, 764
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TscAI	CASTG	1 cut(s)	703
TspDTI	ATGAA	2 cut(s)	290, 815
TspGWI	ACGGA	1 cut(s)	370
TspRI	CASTG	1 cut(s)	703
Van91I	CCANNNNNTGG	2 cut(s)	643, 715
Vha464I	CTTAAG	1 cut(s)	368
VpaK11BI	GGWCC	1 cut(s)	71
XagI	CCTNNNNNAGG	1 cut(s)	144
XapI	RAATTY	2 cut(s)	251, 802
XmiI	GTMKAC	2 cut(s)	422, 567
XmnI	GAANNNNTTC	1 cut(s)	455
XspI	CTAG	4 cut(s)	594, 600, 608, 868
ZraI	GACGTC	1 cut(s)	571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.