Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0021571

Physical Location & Seq

Genomic Coordinates Forward (+)

16127706 .. 16128207

Gene Structure 502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017399

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGCAATGACAGCTGCCGAGGTCAGTGAGGCTGCTCTGGTGCCAGCATTTCAACTTCTGTATGACAGCGTTAACCAAGCAATGGACAAAAAGACTGGCAAGTTTAAGCACGCGCATCCTCGTAAACCTCAAAAACGGGTCCAGCGCGTGATCGGATATGAAGAGCGCAACGTGAAGTTGGGTCTCTCCAAGGAAGAAGTAGAAAACCTAATCACACTGATGCACAAGGGAGTAGAGCAGGTCAGAAAGTTTTCGACCTTGAAGTTTCGTATGAGGTACTTCTGGTGCTGCATCAATGATCACGTTAGGGAAGTTAATGAGTTGGATACACATCTTCGAGAATTGTTGGAAATGCTGTGGCAGCAGGAATCGGAGGATCAAAGGAAGGAGAGCACTACATACTTGGTGAAGAATAGAGGACTTTTAGAGGTAGAGCGGGGGGAATATGATGCAACCAATATAGAGGAGGGGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

159

Amino Acids

18.59

Weight (kDa)

6.54

Isoelectric Point (pI)

37.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021571)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000017399
rosa_rugosa	Rorug02G0126000
rosa_samantha	Rh2AG176800 Rh2BG184800 Rh2DG182900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	229
AccB1I	GGYRCC	1 cut(s)	40
AccB7I	CCANNNNNTGG	1 cut(s)	82
AccBSI	CCGCTC	1 cut(s)	436
AccII	CGCG	2 cut(s)	113, 147
AciI	CCGC	1 cut(s)	436
AclWI	GGATC	1 cut(s)	384
AfaI	GTAC	1 cut(s)	278
AfiI	CCNNNNNNNGG	1 cut(s)	82
AgsI	TTSAA	2 cut(s)	53, 262
AluBI	AGCT	1 cut(s)	14
AluI	AGCT	1 cut(s)	14
Alw21I	GWGCWC	1 cut(s)	395
Alw26I	GTCTC	1 cut(s)	188
AlwI	GGATC	1 cut(s)	384
ApeKI	GCWGC	4 cut(s)	14, 32, 288, 361
Asp700I	GAANNNNTTC	1 cut(s)	250
AspLEI	GCGC	3 cut(s)	115, 147, 168
AspS9I	GGNCC	1 cut(s)	139
AsuHPI	GGTGA	1 cut(s)	418
AvaII	GGWCC	1 cut(s)	139
BanI	GGYRCC	1 cut(s)	40
Bbv12I	GWGCWC	1 cut(s)	395
BbvI	GCAGC	3 cut(s)	19, 275, 373
BciVI	GTATCC	1 cut(s)	319
BclI	TGATCA	1 cut(s)	298
BcoDI	GTCTC	1 cut(s)	188
BfuAI	ACCTGC	1 cut(s)	229
BfuI	GTATCC	1 cut(s)	319
BisI	GCNGC	4 cut(s)	15, 33, 289, 362
BlsI	GCNGC	4 cut(s)	16, 34, 290, 363
Bme18I	GGWCC	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	139
BmiI	GGNNCC	2 cut(s)	42, 140
BmsI	GCATC	4 cut(s)	124, 210, 300, 439
BsaBI	GATNNNNATC	1 cut(s)	330
BsaI	GGTCTC	1 cut(s)	188
BsaJI	CCNNGG	2 cut(s)	18, 189
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse1I	ACTGG	1 cut(s)	100
Bse3DI	GCAATG	2 cut(s)	12, 87
Bse8I	GATNNNNATC	1 cut(s)	330
BseDI	CCNNGG	2 cut(s)	18, 189
BseGI	GGATG	1 cut(s)	115
BseJI	GATNNNNATC	1 cut(s)	330
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMI	GCAATG	2 cut(s)	12, 87
BseNI	ACTGG	1 cut(s)	100
BseXI	GCAGC	3 cut(s)	19, 275, 373
Bsh1236I	CGCG	2 cut(s)	113, 147
BshNI	GGYRCC	1 cut(s)	40
BsiHKAI	GWGCWC	1 cut(s)	395
BslI	CCNNNNNNNGG	1 cut(s)	82
BsmAI	GTCTC	1 cut(s)	188
Bso31I	GGTCTC	1 cut(s)	188
Bsp1286I	GDGCHC	1 cut(s)	395
Bsp143I	GATC	3 cut(s)	150, 298, 376
BspACI	CCGC	1 cut(s)	436
BspFNI	CGCG	2 cut(s)	113, 147
BspLI	GGNNCC	2 cut(s)	42, 140
BspMI	ACCTGC	1 cut(s)	229
BspPI	GGATC	1 cut(s)	384
BspQI	GCTCTTC	1 cut(s)	156
BspT107I	GGYRCC	1 cut(s)	40
BspTNI	GGTCTC	1 cut(s)	188
BsrBI	CCGCTC	1 cut(s)	436
BsrDI	GCAATG	2 cut(s)	12, 87
BsrI	ACTGG	1 cut(s)	100
BssECI	CCNNGG	2 cut(s)	18, 189
BssMI	GATC	3 cut(s)	150, 298, 376
BssT1I	CCWWGG	1 cut(s)	189
Bst6I	CTCTTC	1 cut(s)	156
BstC8I	GCNNGC	2 cut(s)	45, 111
BstF5I	GGATG	1 cut(s)	115
BstFNI	CGCG	2 cut(s)	113, 147
BstHHI	GCGC	3 cut(s)	115, 147, 168
BstKTI	GATC	3 cut(s)	153, 301, 379
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	3 cut(s)	150, 298, 376
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 361
BstUI	CGCG	2 cut(s)	113, 147
BstV1I	GCAGC	3 cut(s)	19, 275, 373
BsuI	GTATCC	1 cut(s)	319
BtsCI	GGATG	1 cut(s)	115
BtsIMutI	CAGTG	2 cut(s)	31, 215
BveI	ACCTGC	1 cut(s)	229
Cac8I	GCNNGC	2 cut(s)	45, 111
CfoI	GCGC	3 cut(s)	115, 147, 168
Cfr13I	GGNCC	1 cut(s)	139
Csp6I	GTAC	1 cut(s)	277
CviJI	RGCY	2 cut(s)	14, 32
CviKI_1	RGCY	2 cut(s)	14, 32
CviQI	GTAC	1 cut(s)	277
DpnI	GATC	3 cut(s)	152, 300, 378
DpnII	GATC	3 cut(s)	150, 298, 376
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
Eco130I	CCWWGG	1 cut(s)	189
Eco31I	GGTCTC	1 cut(s)	188
Eco47I	GGWCC	1 cut(s)	139
EcoT14I	CCWWGG	1 cut(s)	189
ErhI	CCWWGG	1 cut(s)	189
FaiI	YATR	7 cut(s)	63, 159, 272, 400, 447, 461, 475
FauI	CCCGC	1 cut(s)	429
FbaI	TGATCA	1 cut(s)	298
Fnu4HI	GCNGC	4 cut(s)	15, 33, 289, 362
FokI	GGATG	1 cut(s)	102
Fsp4HI	GCNGC	4 cut(s)	15, 33, 289, 362
GlaI	GCGC	3 cut(s)	114, 146, 167
GluI	GCNGC	4 cut(s)	15, 33, 289, 362
HhaI	GCGC	3 cut(s)	115, 147, 168
Hin6I	GCGC	3 cut(s)	113, 145, 166
HinP1I	GCGC	3 cut(s)	113, 145, 166
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HinfI	GANTC	1 cut(s)	368
HpaI	GTTAAC	1 cut(s)	73
HphI	GGTGA	1 cut(s)	418
Hpy166II	GTNNAC	2 cut(s)	73, 125
Hpy188I	TCNGA	3 cut(s)	155, 245, 373
Hpy188III	TCNNGA	1 cut(s)	338
Hpy8I	GTNNAC	2 cut(s)	73, 125
HpyAV	CCTTC	1 cut(s)	379
HpyCH4IV	ACGT	2 cut(s)	171, 303
HpyCH4V	TGCA	3 cut(s)	223, 291, 452
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 361
HpySE526I	ACGT	2 cut(s)	171, 303
HspAI	GCGC	3 cut(s)	113, 145, 166
Ksp22I	TGATCA	1 cut(s)	298
KspAI	GTTAAC	1 cut(s)	73
Kzo9I	GATC	3 cut(s)	150, 298, 376
LguI	GCTCTTC	1 cut(s)	156
LpnPI	CCDG	7 cut(s)	23, 57, 81, 155, 224, 268, 350
Lsp1109I	GCAGC	3 cut(s)	19, 275, 373
LweI	GCATC	4 cut(s)	124, 210, 300, 439
MaeII	ACGT	2 cut(s)	171, 303
MalI	GATC	3 cut(s)	152, 300, 378
MbiI	CCGCTC	1 cut(s)	436
MboI	GATC	3 cut(s)	150, 298, 376
MboII	GAAGA	4 cut(s)	173, 206, 326, 421
MhlI	GDGCHC	1 cut(s)	395
MluCI	AATT	1 cut(s)	341
MmeI	TCCRAC	2 cut(s)	303, 327
MroXI	GAANNNNTTC	1 cut(s)	250
MseI	TTAA	3 cut(s)	72, 105, 315
MslI	CAYNNNNRTG	1 cut(s)	218
MspA1I	CMGCKG	1 cut(s)	14
MvnI	CGCG	2 cut(s)	113, 147
MwoI	GCNNNNNNNGC	2 cut(s)	11, 361
NdeII	GATC	3 cut(s)	150, 298, 376
NlaIV	GGNNCC	2 cut(s)	42, 140
NmeAIII	GCCGAG	1 cut(s)	43
PciSI	GCTCTTC	1 cut(s)	156
PdmI	GAANNNNTTC	1 cut(s)	250
PfeI	GAWTC	1 cut(s)	368
PflMI	CCANNNNNTGG	1 cut(s)	82
PkrI	GCNGC	4 cut(s)	16, 34, 290, 363
PspN4I	GGNNCC	2 cut(s)	42, 140
PspPI	GGNCC	1 cut(s)	139
PvuII	CAGCTG	1 cut(s)	14
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
RseI	CAYNNNNRTG	1 cut(s)	218
SapI	GCTCTTC	1 cut(s)	156
SaqAI	TTAA	3 cut(s)	72, 105, 315
SatI	GCNGC	4 cut(s)	15, 33, 289, 362
Sau3AI	GATC	3 cut(s)	150, 298, 376
Sau96I	GGNCC	1 cut(s)	139
SduI	GDGCHC	1 cut(s)	395
SfaNI	GCATC	4 cut(s)	124, 210, 300, 439
SinI	GGWCC	1 cut(s)	139
SmiMI	CAYNNNNRTG	1 cut(s)	218
Sse9I	AATT	1 cut(s)	341
SsiI	CCGC	1 cut(s)	436
StyI	CCWWGG	1 cut(s)	189
TaiI	ACGT	2 cut(s)	174, 306
TaqI	TCGA	2 cut(s)	254, 337
TasI	AATT	1 cut(s)	341
TfiI	GAWTC	1 cut(s)	368
Tru1I	TTAA	3 cut(s)	72, 105, 315
Tru9I	TTAA	3 cut(s)	72, 105, 315
TscAI	CASTG	2 cut(s)	31, 222
TseI	GCWGC	4 cut(s)	14, 32, 288, 361
TspDTI	ATGAA	1 cut(s)	174
TspRI	CASTG	2 cut(s)	31, 222
Van91I	CCANNNNNTGG	1 cut(s)	82
VpaK11BI	GGWCC	1 cut(s)	139
XmnI	GAANNNNTTC	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.