Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0021571

Physical Location & Seq

Genomic Coordinates Forward (+)

16852148 .. 16852513

Gene Structure 366 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG176800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGACAAAAAGACTGGCAAGTTTAAGTACGTCCTCGTAAACCTCAAGTGCACTACTCTAGACCCTTTACAGAAACGGGTCCAACGCGTGATCGGATATGAAGAGCGCAACGTGAAGTTGGGTCTCTCCAAGGAAGAAGTAGAAAACCCGATCACATTGATGCACAAGGGAGTAAACCAGGTCAGAAAGTTTTCGACATTGAATTTTCGTATGAGGTACTACTGGTGTTGCATCAATGATCACGTTAGGGAAGTTAATGAGTTGGATACACATCTTCGAGAATTGTTGGAAATGTTGTGGCAGCAAGAATTGGAGGATCTAAGGAAGGAGAGCACTACATACTTGGTGAAGAATAGAGGACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

121

Amino Acids

14.57

Weight (kDa)

9.17

Isoelectric Point (pI)

29.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021571)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000017399
rosa_rugosa	Rorug02G0126000
rosa_samantha	Rh2AG176800 Rh2BG184800 Rh2DG182900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	87
AclWI	GGATC	1 cut(s)	324
AcsI	RAATTY	1 cut(s)	202
AfaI	GTAC	2 cut(s)	29, 218
AflIII	ACRYGT	1 cut(s)	85
AgsI	TTSAA	1 cut(s)	202
AjnI	CCWGG	1 cut(s)	177
Alw21I	GWGCWC	2 cut(s)	53, 335
Alw26I	GTCTC	1 cut(s)	128
Alw44I	GTGCAC	1 cut(s)	49
AlwI	GGATC	1 cut(s)	324
ApaLI	GTGCAC	1 cut(s)	49
ApeKI	GCWGC	1 cut(s)	301
ApoI	RAATTY	1 cut(s)	202
Asp700I	GAANNNNTTC	1 cut(s)	190
AspLEI	GCGC	1 cut(s)	108
AspS9I	GGNCC	1 cut(s)	79
AsuHPI	GGTGA	1 cut(s)	358
AvaII	GGWCC	1 cut(s)	79
BaeGI	GKGCMC	1 cut(s)	53
Bbv12I	GWGCWC	2 cut(s)	53, 335
BbvI	GCAGC	1 cut(s)	313
BciT130I	CCWGG	1 cut(s)	179
BciVI	GTATCC	1 cut(s)	259
BclI	TGATCA	1 cut(s)	238
BcoDI	GTCTC	1 cut(s)	128
BfaI	CTAG	1 cut(s)	59
BfuI	GTATCC	1 cut(s)	259
BisI	GCNGC	1 cut(s)	302
BlsI	GCNGC	1 cut(s)	303
Bme1390I	CCNGG	1 cut(s)	179
Bme18I	GGWCC	1 cut(s)	79
BmgT120I	GGNCC	1 cut(s)	79
BmiI	GGNNCC	1 cut(s)	80
BmrFI	CCNGG	1 cut(s)	179
BmsI	GCATC	2 cut(s)	150, 240
BpuEI	CTTGAG	1 cut(s)	29
BsaBI	GATNNNNATC	1 cut(s)	270
BsaI	GGTCTC	1 cut(s)	128
BsaJI	CCNNGG	1 cut(s)	129
Bse1I	ACTGG	2 cut(s)	19, 227
Bse8I	GATNNNNATC	1 cut(s)	270
BseBI	CCWGG	1 cut(s)	179
BseDI	CCNNGG	1 cut(s)	129
BseJI	GATNNNNATC	1 cut(s)	270
BseNI	ACTGG	2 cut(s)	19, 227
BseSI	GKGCMC	1 cut(s)	53
BseXI	GCAGC	1 cut(s)	313
Bsh1236I	CGCG	1 cut(s)	87
BsiHKAI	GWGCWC	2 cut(s)	53, 335
BsmAI	GTCTC	1 cut(s)	128
Bso31I	GGTCTC	1 cut(s)	128
Bsp1286I	GDGCHC	2 cut(s)	53, 335
Bsp143I	GATC	4 cut(s)	90, 150, 238, 316
BspFNI	CGCG	1 cut(s)	87
BspLI	GGNNCC	1 cut(s)	80
BspPI	GGATC	1 cut(s)	324
BspQI	GCTCTTC	1 cut(s)	96
BspTNI	GGTCTC	1 cut(s)	128
BsrI	ACTGG	2 cut(s)	19, 227
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	4 cut(s)	90, 150, 238, 316
BssT1I	CCWWGG	1 cut(s)	129
Bst2UI	CCWGG	1 cut(s)	179
Bst6I	CTCTTC	1 cut(s)	96
BstDEI	CTNAG	1 cut(s)	320
BstFNI	CGCG	1 cut(s)	87
BstHHI	GCGC	1 cut(s)	108
BstKTI	GATC	4 cut(s)	93, 153, 241, 319
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	4 cut(s)	90, 150, 238, 316
BstNI	CCWGG	1 cut(s)	179
BstSCI	CCNGG	1 cut(s)	177
BstSLI	GKGCMC	1 cut(s)	53
BstUI	CGCG	1 cut(s)	87
BstV1I	GCAGC	1 cut(s)	313
BstX2I	RGATCY	1 cut(s)	316
BstYI	RGATCY	1 cut(s)	316
BsuI	GTATCC	1 cut(s)	259
CfoI	GCGC	1 cut(s)	108
Cfr13I	GGNCC	1 cut(s)	79
CsiI	ACCWGGT	1 cut(s)	177
Csp6I	GTAC	2 cut(s)	28, 217
CviQI	GTAC	2 cut(s)	28, 217
DdeI	CTNAG	1 cut(s)	320
DpnI	GATC	4 cut(s)	92, 152, 240, 318
DpnII	GATC	4 cut(s)	90, 150, 238, 316
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Eco130I	CCWWGG	1 cut(s)	129
Eco31I	GGTCTC	1 cut(s)	128
Eco47I	GGWCC	1 cut(s)	79
EcoRII	CCWGG	1 cut(s)	177
EcoT14I	CCWWGG	1 cut(s)	129
ErhI	CCWWGG	1 cut(s)	129
FaiI	YATR	3 cut(s)	99, 212, 340
FbaI	TGATCA	1 cut(s)	238
Fnu4HI	GCNGC	1 cut(s)	302
Fsp4HI	GCNGC	1 cut(s)	302
FspBI	CTAG	1 cut(s)	59
GlaI	GCGC	1 cut(s)	107
GluI	GCNGC	1 cut(s)	302
HhaI	GCGC	1 cut(s)	108
Hin6I	GCGC	1 cut(s)	106
HinP1I	GCGC	1 cut(s)	106
HphI	GGTGA	1 cut(s)	358
Hpy166II	GTNNAC	3 cut(s)	40, 51, 175
Hpy188I	TCNGA	2 cut(s)	95, 185
Hpy188III	TCNNGA	2 cut(s)	59, 278
Hpy8I	GTNNAC	3 cut(s)	40, 51, 175
HpyAV	CCTTC	1 cut(s)	319
HpyCH4IV	ACGT	3 cut(s)	30, 111, 243
HpyCH4V	TGCA	3 cut(s)	51, 163, 231
HpyF3I	CTNAG	1 cut(s)	320
HpySE526I	ACGT	3 cut(s)	30, 111, 243
HspAI	GCGC	1 cut(s)	106
Ksp22I	TGATCA	1 cut(s)	238
Kzo9I	GATC	4 cut(s)	90, 150, 238, 316
LguI	GCTCTTC	1 cut(s)	96
LpnPI	CCDG	3 cut(s)	164, 191, 208
Lsp1109I	GCAGC	1 cut(s)	313
LweI	GCATC	2 cut(s)	150, 240
MabI	ACCWGGT	1 cut(s)	177
MaeI	CTAG	1 cut(s)	59
MaeII	ACGT	3 cut(s)	30, 111, 243
MalI	GATC	4 cut(s)	92, 152, 240, 318
MboI	GATC	4 cut(s)	90, 150, 238, 316
MboII	GAAGA	4 cut(s)	113, 146, 266, 361
MflI	RGATCY	1 cut(s)	316
MhlI	GDGCHC	2 cut(s)	53, 335
MluCI	AATT	3 cut(s)	202, 281, 308
MluI	ACGCGT	1 cut(s)	85
MmeI	TCCRAC	3 cut(s)	106, 243, 267
MnlI	CCTC	5 cut(s)	44, 53, 207, 307, 350
MroXI	GAANNNNTTC	1 cut(s)	190
MseI	TTAA	2 cut(s)	24, 255
MslI	CAYNNNNRTG	1 cut(s)	158
MspR9I	CCNGG	1 cut(s)	179
MvaI	CCWGG	1 cut(s)	179
MvnI	CGCG	1 cut(s)	87
NdeII	GATC	4 cut(s)	90, 150, 238, 316
NlaIV	GGNNCC	1 cut(s)	80
PciSI	GCTCTTC	1 cut(s)	96
PdmI	GAANNNNTTC	1 cut(s)	190
PkrI	GCNGC	1 cut(s)	303
Psp6I	CCWGG	1 cut(s)	177
PspGI	CCWGG	1 cut(s)	177
PspN4I	GGNNCC	1 cut(s)	80
PspPI	GGNCC	1 cut(s)	79
PsuI	RGATCY	1 cut(s)	316
RsaI	GTAC	2 cut(s)	29, 218
RsaNI	GTAC	2 cut(s)	28, 217
RseI	CAYNNNNRTG	1 cut(s)	158
SapI	GCTCTTC	1 cut(s)	96
SaqAI	TTAA	2 cut(s)	24, 255
SatI	GCNGC	1 cut(s)	302
Sau3AI	GATC	4 cut(s)	90, 150, 238, 316
Sau96I	GGNCC	1 cut(s)	79
ScrFI	CCNGG	1 cut(s)	179
SduI	GDGCHC	2 cut(s)	53, 335
SetI	ASST	6 cut(s)	33, 45, 114, 183, 218, 246
SexAI	ACCWGGT	1 cut(s)	177
SfaNI	GCATC	2 cut(s)	150, 240
SinI	GGWCC	1 cut(s)	79
SmiMI	CAYNNNNRTG	1 cut(s)	158
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	3 cut(s)	202, 281, 308
SspMI	CTAG	1 cut(s)	59
StyD4I	CCNGG	1 cut(s)	177
StyI	CCWWGG	1 cut(s)	129
TaiI	ACGT	3 cut(s)	33, 114, 246
TaqI	TCGA	2 cut(s)	194, 277
TasI	AATT	3 cut(s)	202, 281, 308
Tru1I	TTAA	2 cut(s)	24, 255
Tru9I	TTAA	2 cut(s)	24, 255
TseI	GCWGC	1 cut(s)	301
TspDTI	ATGAA	1 cut(s)	114
VneI	GTGCAC	1 cut(s)	49
VpaK11BI	GGWCC	1 cut(s)	79
XapI	RAATTY	1 cut(s)	202
XbaI	TCTAGA	1 cut(s)	58
XmnI	GAANNNNTTC	1 cut(s)	190
XspI	CTAG	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.